Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001555

Physical Location & Seq

Genomic Coordinates Forward (+)

77427590 .. 77430809

Gene Structure 3220 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021711

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGAAGGCATATGATGCCAGAGTTGTTTTAGCACCCTTGACTAGACAGACATCATACAACAATCTTCCTCAACCGCATGCCATCTTATATTACTCTCAGCGAACAACCAATGGGGGTCTTTTAATAGCTGAAGCCAGTAGAGTTTCTGACACAGCTCAAGGGTACCCGGATATGCCTGGTTTATGGACAAAGGAACAAGTTGAAGCATGGAAACCCATCGTTGATGCAGTTCATGCTAAAGGTGGTGTATTCTTCTGTCAGATCTGGCATGCGGGAAGAGTTTCAAATAGTGCTTTTCAACCAAATGGACAAGCTCCGATCTCTTGTACTGACAAGCCACTAACCCCTCAAGTACTATCTAATGGTGTTGATGTTGCTGAATTCACACCTCCAAGGCAATTAAGGACAGATGAAATCCCACAAATTGTCAATGACTTTAGACTCGCTGCAAGGAATGCAATCGAAGCTGGCTTTGATGGGGTTGAAATTCATGGAGCTAATGGTTACCTTATTGATCAGTTTATGAAAGACCAAGTGAATGATCGAACAGACCAATATGGTGGATCTCTAGAGAATCGCTGCCGATTTGCTCTGGAAATCATTGAAGCAGTTGTTAATGAAATAGGAGCAGACAAAGTTGGAATTAGATTATCTCCATTTGCCGACTATATGGAATCAGGGGATTCAAACCCTGAAGCATTAGGCCTTTATATGGTTCAATCCTTAAACAAATATGGGATTCTGTACTGCCATGTGATTGGGCCAAGAATGAAGGAATCTGGAGTAAAGAGTGAAAGTGCTGGCAGTCTTCTACCCATGAGAGAAGCTTTTAGTGGTACCTTCATGGCTAATGGTGGTTTTGACAGGGAAGATGGGAACAATGCAGTGGCTGAGGGTCGTGTAGATCTTATTGCTTACGGCCGTTGGTTCTTGTCTAATCCAGATTTGCCAAAGAGATTTGAGCTTAATGCTCCTCTAAACAAGCATGACAGAAGTACTTTCTATACTTCTGATCCAGTTGTTGGTTACACTGATTATCCATTTCTTGAAACCACTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

354

Amino Acids

38.97

Weight (kDa)

5.09

Isoelectric Point (pI)

37.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	6 - 326	1e-80	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17990 AT1G17990 AT1G18020
fragaria_vesca	FvH4_5g32750
malus_domestica	MD08G1216100.v1.1 MD08G1216200.v1.1 MD15G1401200.v1.1 MD15G1401300.v1.1 MD15G1401800.v1.1 MD15G1402400.v1.1 MD15G1402700.v1.1
prunus_persica	Prupe.1G465800_v2.0.a1 Prupe.1G548300_v2.0.a1 Prupe.1G548400_v2.0.a1 Prupe.1G548600_v2.0.a1 Prupe.1G548700_v2.0.a1 Prupe.1G548800_v2.0.a1 Prupe.1G548900_v2.0.a1 Prupe.1G549000_v2.0.a1 Prupe.7G200600_v2.0.a1
pyrus_communis	pycom08g18710 pycom08g18720 pycom15g35950 pycom15g35960 pycom15g35970 pycom15g36010 pycom15g36020
rosa_chinensis	RchiOBHm_Chr2g0094571 RchiOBHm_Chr2g0094601 RchiOBHm_Chr2g0167371 RchiOBHm_Chr7g0230371 RchiOBHm_Chr7g0230381 RchiOBHm_Chr7g0230411 RchiOBHm_Chr7g0230421
rosa_laevigata	RLG00000001497 RLG00000009949 RLG00000016505 RLG00000021711
rosa_multiflora	Rmu_co8113900.1_g000001 Rmu_sc0001840.1_g000007 Rmu_sc0002541.1_g000033 Rmu_sc0007103.1_g000019
rosa_roxburghii	Rroxscaffold_2G00083570
rosa_rugosa	Rorug02G0045500 Rorug02G0529800 Rorug07G0260300
rosa_samantha	Rh2BG093600 Rh2BG608200
rosa_wichuraiana	Rw2G049670 Rw7G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	162, 836
AccB1I	GGYRCC	2 cut(s)	162, 836
AccB7I	CCANNNNNTGG	1 cut(s)	1022
AciI	CCGC	2 cut(s)	74, 272
AclWI	GGATC	2 cut(s)	571, 1007
AcoI	YGGCCR	1 cut(s)	919
AcsI	RAATTY	2 cut(s)	380, 486
AcuI	CTGAAG	2 cut(s)	150, 714
AfaI	GTAC	6 cut(s)	164, 328, 354, 746, 838, 997
AfiI	CCNNNNNNNGG	2 cut(s)	712, 1022
AgsI	TTSAA	8 cut(s)	203, 285, 299, 485, 605, 687, 719, 1049
AjnI	CCWGG	1 cut(s)	175
AluBI	AGCT	7 cut(s)	128, 155, 314, 467, 497, 827, 964
AluI	AGCT	7 cut(s)	128, 155, 314, 467, 497, 827, 964
AlwI	GGATC	2 cut(s)	571, 1007
AlwNI	CAGNNNCTG	1 cut(s)	890
AoxI	GGCC	3 cut(s)	703, 761, 919
ApeKI	GCWGC	2 cut(s)	446, 579
ApoI	RAATTY	2 cut(s)	380, 486
Asp700I	GAANNNNTTC	1 cut(s)	280
Asp718I	GGTACC	2 cut(s)	162, 836
AspS9I	GGNCC	1 cut(s)	761
AsuC2I	CCSGG	1 cut(s)	167
BanI	GGYRCC	2 cut(s)	162, 836
BbsI	GAAGAC	1 cut(s)	800
BbvCI	CCTCAGC	1 cut(s)	891
BbvI	GCAGC	2 cut(s)	433, 566
BccI	CCATC	4 cut(s)	89, 224, 470, 866
BceAI	ACGGC	2 cut(s)	906, 934
BciT130I	CCWGG	1 cut(s)	177
BclI	TGATCA	1 cut(s)	514
BcnI	CCSGG	1 cut(s)	167
BfaI	CTAG	2 cut(s)	42, 569
BglII	AGATCT	2 cut(s)	261, 904
BisI	GCNGC	2 cut(s)	447, 580
BlsI	GCNGC	2 cut(s)	448, 581
BmcAI	AGTACT	2 cut(s)	354, 997
Bme1390I	CCNGG	2 cut(s)	167, 177
BmgT120I	GGNCC	1 cut(s)	761
BmiI	GGNNCC	2 cut(s)	164, 838
BmrFI	CCNGG	2 cut(s)	167, 177
BmsI	GCATC	2 cut(s)	4, 214
BpiI	GAAGAC	1 cut(s)	800
BpmI	CTGGAG	1 cut(s)	801
Bpu10I	CCTNAGC	1 cut(s)	891
BpuEI	CTTGAG	2 cut(s)	141, 333
BpuMI	CCSGG	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	392
Bsc4I	CCNNNNNNNGG	2 cut(s)	712, 1022
Bse1I	ACTGG	2 cut(s)	135, 1016
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	392
BseLI	CCNNNNNNNGG	2 cut(s)	712, 1022
BseMII	CTCAG	2 cut(s)	110, 882
BseNI	ACTGG	2 cut(s)	135, 1016
BseRI	GAGGAG	1 cut(s)	963
BseX3I	CGGCCG	1 cut(s)	919
BseXI	GCAGC	2 cut(s)	433, 566
Bsh1285I	CGRYCG	1 cut(s)	922
BshFI	GGCC	3 cut(s)	705, 763, 921
BshNI	GGYRCC	2 cut(s)	162, 836
BsiEI	CGRYCG	1 cut(s)	922
BsiSI	CCGG	1 cut(s)	167
BslI	CCNNNNNNNGG	2 cut(s)	712, 1022
BsmI	GAATGC	1 cut(s)	460
BsnI	GGCC	3 cut(s)	705, 763, 921
Bsp143I	GATC	7 cut(s)	261, 318, 514, 541, 563, 904, 1012
BspACI	CCGC	2 cut(s)	74, 272
BspANI	GGCC	3 cut(s)	705, 763, 921
BspCNI	CTCAG	2 cut(s)	109, 883
BspLI	GGNNCC	2 cut(s)	164, 838
BspPI	GGATC	2 cut(s)	571, 1007
BspT107I	GGYRCC	2 cut(s)	162, 836
BsrI	ACTGG	2 cut(s)	135, 1016
BssECI	CCNNGG	1 cut(s)	392
BssMI	GATC	7 cut(s)	261, 318, 514, 541, 563, 904, 1012
BssT1I	CCWWGG	1 cut(s)	392
Bst2UI	CCWGG	1 cut(s)	177
Bst6I	CTCTTC	1 cut(s)	271
BstAPI	GCANNNNNTGC	3 cut(s)	14, 233, 455
BstC8I	GCNNGC	4 cut(s)	78, 270, 469, 802
BstDEI	CTNAG	2 cut(s)	96, 891
BstEII	GGTNACC	1 cut(s)	503
BstKTI	GATC	7 cut(s)	264, 321, 517, 544, 566, 907, 1015
BstMBI	GATC	7 cut(s)	261, 318, 514, 541, 563, 904, 1012
BstMCI	CGRYCG	1 cut(s)	922
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 233, 455, 464
BstNI	CCWGG	1 cut(s)	177
BstNSI	RCATGY	2 cut(s)	80, 272
BstPI	GGTNACC	1 cut(s)	503
BstSCI	CCNGG	2 cut(s)	165, 175
BstV1I	GCAGC	2 cut(s)	433, 566
BstV2I	GAAGAC	1 cut(s)	800
BstX2I	RGATCY	3 cut(s)	261, 563, 904
BstXI	CCANNNNNNTGG	2 cut(s)	560, 758
BstYI	RGATCY	3 cut(s)	261, 563, 904
BstZI	CGGCCG	1 cut(s)	919
BsuRI	GGCC	3 cut(s)	705, 763, 921
BtsI	GCAGTG	2 cut(s)	891, 1053
BtsIMutI	CAGTG	3 cut(s)	891, 1029, 1053
Cac8I	GCNNGC	4 cut(s)	78, 270, 469, 802
CaiI	CAGNNNCTG	1 cut(s)	890
Cfr13I	GGNCC	1 cut(s)	761
Csp6I	GTAC	6 cut(s)	163, 327, 353, 745, 837, 996
CviAII	CATG	9 cut(s)	77, 207, 233, 269, 491, 752, 817, 844, 986
CviQI	GTAC	6 cut(s)	163, 327, 353, 745, 837, 996
DdeI	CTNAG	2 cut(s)	96, 891
DpnI	GATC	7 cut(s)	263, 320, 516, 543, 565, 906, 1014
DpnII	GATC	7 cut(s)	261, 318, 514, 541, 563, 904, 1012
EaeI	YGGCCR	1 cut(s)	919
EagI	CGGCCG	1 cut(s)	919
Eam1104I	CTCTTC	1 cut(s)	271
EarI	CTCTTC	1 cut(s)	271
EclXI	CGGCCG	1 cut(s)	919
Eco130I	CCWWGG	1 cut(s)	392
Eco147I	AGGCCT	1 cut(s)	705
Eco52I	CGGCCG	1 cut(s)	919
Eco57I	CTGAAG	2 cut(s)	150, 714
Eco91I	GGTNACC	1 cut(s)	503
EcoO65I	GGTNACC	1 cut(s)	503
EcoRI	GAATTC	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	392
ErhI	CCWWGG	1 cut(s)	392
FaeI	CATG	9 cut(s)	80, 210, 236, 272, 494, 755, 820, 847, 989
FatI	CATG	9 cut(s)	76, 206, 232, 268, 490, 751, 816, 843, 985
FauI	CCCGC	1 cut(s)	265
FauNDI	CATATG	1 cut(s)	10
FbaI	TGATCA	1 cut(s)	514
Fnu4HI	GCNGC	2 cut(s)	447, 580
Fsp4HI	GCNGC	2 cut(s)	447, 580
FspBI	CTAG	2 cut(s)	42, 569
GluI	GCNGC	2 cut(s)	447, 580
GsuI	CTGGAG	1 cut(s)	801
HaeIII	GGCC	3 cut(s)	705, 763, 921
HapII	CCGG	1 cut(s)	167
Hin1II	CATG	9 cut(s)	80, 210, 236, 272, 494, 755, 820, 847, 989
HindIII	AAGCTT	1 cut(s)	825
HinfI	GANTC	6 cut(s)	441, 574, 674, 683, 739, 776
HpaII	CCGG	1 cut(s)	167
Hpy188I	TCNGA	4 cut(s)	148, 261, 318, 1012
Hpy188III	TCNNGA	5 cut(s)	569, 593, 780, 941, 1046
HpyAV	CCTTC	2 cut(s)	766, 850
HpyCH4V	TGCA	4 cut(s)	227, 449, 458, 884
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 233, 455, 464
HpyF3I	CTNAG	2 cut(s)	96, 891
Hsp92II	CATG	9 cut(s)	80, 210, 236, 272, 494, 755, 820, 847, 989
KpnI	GGTACC	2 cut(s)	166, 840
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	7 cut(s)	261, 318, 514, 541, 563, 904, 1012
LmnI	GCTCC	4 cut(s)	319, 494, 626, 976
Lsp1109I	GCAGC	2 cut(s)	433, 566
LweI	GCATC	2 cut(s)	4, 214
MaeI	CTAG	2 cut(s)	42, 569
MaeIII	GTNAC	2 cut(s)	503, 1025
MalI	GATC	7 cut(s)	263, 320, 516, 543, 565, 906, 1014
MboI	GATC	7 cut(s)	261, 318, 514, 541, 563, 904, 1012
MboII	GAAGA	5 cut(s)	56, 244, 288, 800, 881
MflI	RGATCY	3 cut(s)	261, 563, 904
MluCI	AATT	5 cut(s)	380, 398, 423, 486, 642
MlyI	GAGTC	1 cut(s)	435
MmeI	TCCRAC	1 cut(s)	619
MnlI	CCTC	5 cut(s)	78, 357, 399, 886, 984
MroXI	GAANNNNTTC	1 cut(s)	280
MseI	TTAA	5 cut(s)	122, 401, 615, 725, 966
MspI	CCGG	1 cut(s)	167
MspR9I	CCNGG	2 cut(s)	167, 177
Mva1269I	GAATGC	1 cut(s)	460
MvaI	CCWGG	1 cut(s)	177
MwoI	GCNNNNNNNGC	4 cut(s)	14, 233, 455, 464
NciI	CCSGG	1 cut(s)	167
NdeI	CATATG	1 cut(s)	10
NdeII	GATC	7 cut(s)	261, 318, 514, 541, 563, 904, 1012
NlaIII	CATG	9 cut(s)	80, 210, 236, 272, 494, 755, 820, 847, 989
NlaIV	GGNNCC	2 cut(s)	164, 838
NspI	RCATGY	2 cut(s)	80, 272
PaeI	GCATGC	2 cut(s)	80, 272
PceI	AGGCCT	1 cut(s)	705
PctI	GAATGC	1 cut(s)	460
PdmI	GAANNNNTTC	1 cut(s)	280
PfeI	GAWTC	5 cut(s)	574, 674, 683, 739, 776
PflMI	CCANNNNNTGG	1 cut(s)	1022
PkrI	GCNGC	2 cut(s)	448, 581
PleI	GAGTC	1 cut(s)	435
PpsI	GAGTC	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	175
PspEI	GGTNACC	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	2 cut(s)	164, 838
PspPI	GGNCC	1 cut(s)	761
PstNI	CAGNNNCTG	1 cut(s)	890
PsuI	RGATCY	3 cut(s)	261, 563, 904
RsaI	GTAC	6 cut(s)	164, 328, 354, 746, 838, 997
RsaNI	GTAC	6 cut(s)	163, 327, 353, 745, 837, 996
SaqAI	TTAA	5 cut(s)	122, 401, 615, 725, 966
SatI	GCNGC	2 cut(s)	447, 580
Sau3AI	GATC	7 cut(s)	261, 318, 514, 541, 563, 904, 1012
Sau96I	GGNCC	1 cut(s)	761
ScaI	AGTACT	2 cut(s)	354, 997
SchI	GAGTC	1 cut(s)	435
ScrFI	CCNGG	2 cut(s)	167, 177
SfaNI	GCATC	2 cut(s)	4, 214
SmlI	CTYRAG	2 cut(s)	156, 348
SmoI	CTYRAG	2 cut(s)	156, 348
SphI	GCATGC	2 cut(s)	80, 272
Sse9I	AATT	5 cut(s)	380, 398, 423, 486, 642
SseBI	AGGCCT	1 cut(s)	705
SsiI	CCGC	2 cut(s)	74, 272
SspMI	CTAG	2 cut(s)	42, 569
StuI	AGGCCT	1 cut(s)	705
StyD4I	CCNGG	2 cut(s)	165, 175
StyI	CCWWGG	1 cut(s)	392
TaqI	TCGA	2 cut(s)	462, 544
TasI	AATT	5 cut(s)	380, 398, 423, 486, 642
TatI	WGTACW	4 cut(s)	326, 352, 744, 995
TfiI	GAWTC	5 cut(s)	574, 674, 683, 739, 776
Tru1I	TTAA	5 cut(s)	122, 401, 615, 725, 966
Tru9I	TTAA	5 cut(s)	122, 401, 615, 725, 966
TscAI	CASTG	3 cut(s)	891, 1036, 1060
TseI	GCWGC	2 cut(s)	446, 579
TspDTI	ATGAA	8 cut(s)	17, 221, 426, 479, 539, 633, 785, 832
TspRI	CASTG	3 cut(s)	891, 1036, 1060
Van91I	CCANNNNNTGG	1 cut(s)	1022
XapI	RAATTY	2 cut(s)	380, 486
XbaI	TCTAGA	1 cut(s)	568
XceI	RCATGY	2 cut(s)	80, 272
XmnI	GAANNNNTTC	1 cut(s)	280
XspI	CTAG	2 cut(s)	42, 569
ZrmI	AGTACT	2 cut(s)	354, 997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.