Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001555

Physical Location & Seq

Genomic Coordinates Forward (+)

3582875 .. 3584293

Gene Structure 1419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0045500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGAACTCTGTGTCTCTTTGATTCTCTTTCTGATTTCTCTGCCAGCATTTTTGGCCAAAGATGTTGGACATGCTAGCGTTGTAGTTGATGGGACAGTAGCTACTGCACAGAGCTTGTCTCATCCTCTGATTGCCAAGTCAATTCAAGGAGATTTGAAATATCCTTGCCATCCTTTCAGAAAGCAGAAGGGTGGATTGTTTGGATTTTCTACAGGATGTTTACCTATGAGTAGATGGGATGAGCTTAACCATTTTTTCAGCAAGATGAGAACCCTTGTCACATTTAGCTTGAATGCACTGTCAGGGAGGCACCACAAAGGCGCGGATGTTTGGGTATCAGAAGTGGGAAGGGTTGGTACTGCAGGACTTGGGAAGGTTGTGGAAGTTTTGGACACCTTTGGCAGTAGCATGACAAATTTAAACCCTAGTAGTGGTTTTACCTCTGGGGTGACAACAAAAGGGAACAAAATTTCAATTTTGGCTTTTGAAGTTGCAAACACAATTGTTAAGGGTTCAAATTTAATGCAATCCCTTTCAAAGGATAACATCAAACATTTGAAAGAGGTTGTGCTTCCATCTGAAGGGGTACAGAATTCAATATCGAGAGATATGGATGAACTCCTGAGAACTGCTGCAGCTGACAAGGGGTTGGTAGTGAAACTTTTCCATCTATACTTTTCTGGATGTTTAGAAAAGCTGTATTTGTTATTACCATCAATCTTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009694 GO:0009695 GO:0009791 GO:0009908 GO:0009987 GO:0010035 GO:0010193 GO:0010817 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0019752 GO:0022414 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042579 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046677 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0090567 GO:0099402 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

242

Amino Acids

26.21

Weight (kDa)

9.16

Isoelectric Point (pI)

28.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_79n	PF03662	50 - 114	2.4e-20	Glycosyl hydrolase family 79, N-terminal domain
DUF3475	PF11961	159 - 215	1.3e-22	Domain of unknown function (DUF3475)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17990 AT1G17990 AT1G18020
fragaria_vesca	FvH4_5g32750
malus_domestica	MD08G1216100.v1.1 MD08G1216200.v1.1 MD15G1401200.v1.1 MD15G1401300.v1.1 MD15G1401800.v1.1 MD15G1402400.v1.1 MD15G1402700.v1.1
prunus_persica	Prupe.1G465800_v2.0.a1 Prupe.1G548300_v2.0.a1 Prupe.1G548400_v2.0.a1 Prupe.1G548600_v2.0.a1 Prupe.1G548700_v2.0.a1 Prupe.1G548800_v2.0.a1 Prupe.1G548900_v2.0.a1 Prupe.1G549000_v2.0.a1 Prupe.7G200600_v2.0.a1
pyrus_communis	pycom08g18710 pycom08g18720 pycom15g35950 pycom15g35960 pycom15g35970 pycom15g36010 pycom15g36020
rosa_chinensis	RchiOBHm_Chr2g0094571 RchiOBHm_Chr2g0094601 RchiOBHm_Chr2g0167371 RchiOBHm_Chr7g0230371 RchiOBHm_Chr7g0230381 RchiOBHm_Chr7g0230411 RchiOBHm_Chr7g0230421
rosa_laevigata	RLG00000001497 RLG00000009949 RLG00000016505 RLG00000021711
rosa_multiflora	Rmu_co8113900.1_g000001 Rmu_sc0001840.1_g000007 Rmu_sc0002541.1_g000033 Rmu_sc0007103.1_g000019
rosa_roxburghii	Rroxscaffold_2G00083570
rosa_rugosa	Rorug02G0045500 Rorug02G0529800 Rorug07G0260300
rosa_samantha	Rh2BG093600 Rh2BG608200
rosa_wichuraiana	Rw2G049670 Rw7G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	309
AccII	CGCG	1 cut(s)	323
AciI	CCGC	1 cut(s)	323
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	4 cut(s)	415, 468, 517, 592
AcuI	CTGAAG	1 cut(s)	600
AfaI	GTAC	2 cut(s)	358, 588
AfiI	CCNNNNNNNGG	3 cut(s)	431, 538, 581
AgsI	TTSAA	9 cut(s)	146, 157, 292, 474, 488, 516, 537, 559, 597
AluBI	AGCT	6 cut(s)	101, 114, 244, 288, 638, 697
AluI	AGCT	6 cut(s)	101, 114, 244, 288, 638, 697
Alw26I	GTCTC	2 cut(s)	19, 123
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	2 cut(s)	632, 635
ApoI	RAATTY	4 cut(s)	415, 468, 517, 592
Asp700I	GAANNNNTTC	1 cut(s)	662
AspLEI	GCGC	1 cut(s)	323
AsuHPI	GGTGA	1 cut(s)	460
AsuNHI	GCTAGC	1 cut(s)	74
BalI	TGGCCA	1 cut(s)	56
BanI	GGYRCC	1 cut(s)	309
BarI	GAAGNNNNNNTAC	2 cut(s)	340, 372
BbvI	GCAGC	2 cut(s)	619, 647
BccI	CCATC	6 cut(s)	83, 177, 228, 583, 675, 721
BcoDI	GTCTC	2 cut(s)	19, 123
BfaI	CTAG	2 cut(s)	75, 426
BfmI	CTRYAG	3 cut(s)	210, 360, 633
BisI	GCNGC	2 cut(s)	633, 636
BlsI	GCNGC	2 cut(s)	634, 637
BmiI	GGNNCC	1 cut(s)	311
BmtI	GCTAGC	1 cut(s)	78
BplI	GAGNNNNNCTC	2 cut(s)	103, 135
Bsc4I	CCNNNNNNNGG	3 cut(s)	431, 538, 581
BseGI	GGATG	7 cut(s)	121, 169, 221, 244, 331, 619, 689
BseLI	CCNNNNNNNGG	3 cut(s)	431, 538, 581
BseMII	CTCAG	1 cut(s)	614
BseXI	GCAGC	2 cut(s)	619, 647
BsgI	GTGCAG	1 cut(s)	90
Bsh1236I	CGCG	1 cut(s)	323
BshFI	GGCC	1 cut(s)	56
BshNI	GGYRCC	1 cut(s)	309
BslFI	GGGAC	1 cut(s)	106
BslI	CCNNNNNNNGG	3 cut(s)	431, 538, 581
BsmAI	GTCTC	2 cut(s)	19, 123
BsmFI	GGGAC	1 cut(s)	106
BsmI	GAATGC	1 cut(s)	298
BsnI	GGCC	1 cut(s)	56
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	615
BspFNI	CGCG	1 cut(s)	323
BspLI	GGNNCC	1 cut(s)	311
BspMAI	CTGCAG	2 cut(s)	364, 637
BspOI	GCTAGC	1 cut(s)	78
BspT107I	GGYRCC	1 cut(s)	309
Bst4CI	ACNGT	2 cut(s)	97, 300
BstC8I	GCNNGC	2 cut(s)	45, 76
BstDEI	CTNAG	1 cut(s)	623
BstENI	CCTNNNNNAGG	1 cut(s)	536
BstF5I	GGATG	7 cut(s)	121, 169, 221, 244, 331, 619, 689
BstFNI	CGCG	1 cut(s)	323
BstHHI	GCGC	1 cut(s)	323
BstMAI	GTCTC	2 cut(s)	19, 123
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNSI	RCATGY	1 cut(s)	74
BstSFI	CTRYAG	3 cut(s)	210, 360, 633
BstUI	CGCG	1 cut(s)	323
BstV1I	GCAGC	2 cut(s)	619, 647
BsuRI	GGCC	1 cut(s)	56
BtsCI	GGATG	7 cut(s)	121, 169, 221, 244, 331, 619, 689
BtsIMutI	CAGTG	1 cut(s)	296
Cac8I	GCNNGC	2 cut(s)	45, 76
CfoI	GCGC	1 cut(s)	323
Csp6I	GTAC	2 cut(s)	357, 587
CviAII	CATG	2 cut(s)	71, 409
CviJI	RGCY	8 cut(s)	56, 101, 114, 244, 288, 482, 638, 697
CviKI_1	RGCY	8 cut(s)	56, 101, 114, 244, 288, 482, 638, 697
CviQI	GTAC	2 cut(s)	357, 587
DdeI	CTNAG	1 cut(s)	623
DraI	TTTAAA	2 cut(s)	420, 724
EaeI	YGGCCR	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	600
EcoNI	CCTNNNNNAGG	1 cut(s)	536
EcoRI	GAATTC	1 cut(s)	592
FaeI	CATG	2 cut(s)	74, 412
FaiI	YATR	5 cut(s)	72, 227, 410, 611, 673
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	2 cut(s)	70, 408
Fnu4HI	GCNGC	2 cut(s)	633, 636
FokI	GGATG	7 cut(s)	108, 156, 228, 251, 338, 626, 696
Fsp4HI	GCNGC	2 cut(s)	633, 636
FspBI	CTAG	2 cut(s)	75, 426
GlaI	GCGC	1 cut(s)	322
GluI	GCNGC	2 cut(s)	633, 636
HaeIII	GGCC	1 cut(s)	56
HhaI	GCGC	1 cut(s)	323
Hin1II	CATG	2 cut(s)	74, 412
Hin6I	GCGC	1 cut(s)	321
HinP1I	GCGC	1 cut(s)	321
HinfI	GANTC	1 cut(s)	22
HphI	GGTGA	1 cut(s)	460
Hpy166II	GTNNAC	1 cut(s)	221
Hpy188I	TCNGA	5 cut(s)	33, 129, 179, 340, 580
Hpy188III	TCNNGA	3 cut(s)	603, 622, 681
Hpy8I	GTNNAC	1 cut(s)	221
HpyAV	CCTTC	4 cut(s)	181, 342, 367, 575
HpyCH4III	ACNGT	2 cut(s)	97, 300
HpyCH4V	TGCA	6 cut(s)	107, 296, 362, 494, 526, 635
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	1 cut(s)	623
Hsp92II	CATG	2 cut(s)	74, 412
HspAI	GCGC	1 cut(s)	321
LpnPI	CCDG	7 cut(s)	57, 198, 288, 348, 429, 635, 666
Lsp1109I	GCAGC	2 cut(s)	619, 647
MaeI	CTAG	2 cut(s)	75, 426
MaeIII	GTNAC	2 cut(s)	277, 448
MfeI	CAATTG	1 cut(s)	501
MlsI	TGGCCA	1 cut(s)	56
MluCI	AATT	7 cut(s)	141, 415, 468, 474, 501, 517, 592
MluNI	TGGCCA	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	4 cut(s)	135, 300, 451, 556
Mox20I	TGGCCA	1 cut(s)	56
MroXI	GAANNNNTTC	1 cut(s)	662
MscI	TGGCCA	1 cut(s)	56
MseI	TTAA	5 cut(s)	246, 419, 507, 521, 723
Msp20I	TGGCCA	1 cut(s)	56
MspA1I	CMGCKG	1 cut(s)	638
MunI	CAATTG	1 cut(s)	501
Mva1269I	GAATGC	1 cut(s)	298
MvnI	CGCG	1 cut(s)	323
MwoI	GCNNNNNNNGC	1 cut(s)	53
NheI	GCTAGC	1 cut(s)	74
NlaIII	CATG	2 cut(s)	74, 412
NlaIV	GGNNCC	1 cut(s)	311
NmuCI	GTSAC	2 cut(s)	277, 448
NspI	RCATGY	1 cut(s)	74
PctI	GAATGC	1 cut(s)	298
PdmI	GAANNNNTTC	1 cut(s)	662
PfeI	GAWTC	1 cut(s)	22
PkrI	GCNGC	2 cut(s)	634, 637
PspN4I	GGNNCC	1 cut(s)	311
PstI	CTGCAG	2 cut(s)	364, 637
PvuII	CAGCTG	1 cut(s)	638
RsaI	GTAC	2 cut(s)	358, 588
RsaNI	GTAC	2 cut(s)	357, 587
SaqAI	TTAA	5 cut(s)	246, 419, 507, 521, 723
SatI	GCNGC	2 cut(s)	633, 636
SfcI	CTRYAG	3 cut(s)	210, 360, 633
Sse9I	AATT	7 cut(s)	141, 415, 468, 474, 501, 517, 592
SsiI	CCGC	1 cut(s)	323
SspMI	CTAG	2 cut(s)	75, 426
TaaI	ACNGT	2 cut(s)	97, 300
TaqI	TCGA	1 cut(s)	602
TasI	AATT	7 cut(s)	141, 415, 468, 474, 501, 517, 592
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	5 cut(s)	246, 419, 507, 521, 723
Tru9I	TTAA	5 cut(s)	246, 419, 507, 521, 723
TscAI	CASTG	1 cut(s)	303
TseFI	GTSAC	2 cut(s)	277, 448
TseI	GCWGC	2 cut(s)	632, 635
Tsp45I	GTSAC	2 cut(s)	277, 448
TspDTI	ATGAA	1 cut(s)	630
TspRI	CASTG	1 cut(s)	303
XagI	CCTNNNNNAGG	1 cut(s)	536
XapI	RAATTY	4 cut(s)	415, 468, 517, 592
XceI	RCATGY	1 cut(s)	74
XmnI	GAANNNNTTC	1 cut(s)	662
XspI	CTAG	2 cut(s)	75, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.