Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001555

Physical Location & Seq

Genomic Coordinates Forward (+)

82959253 .. 82963244

Gene Structure 3992 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG608200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGCCTGGTTTATGGACAAAGGAACAAGTTGAAGCATGGAAACCCATCGTTGATGCAGTTCATGCTAAAGGTGGTGTATTCTTCTGTCAGATCTGGCATGCGGGAAGAGTTTCAAATAGTGCTTTTCAACCAAATGGACAAGCTCCGATCTCTTGTACTGACAAGCCACTAACCCCTCAAGTACTATCTAATGGTGTTGATGTTGCTGAATTCACACCTCCAAGGCAATTAAGGACAGATGAAATCCCACAAATTGTCAATGACTTTAGACTTGCTGCAAGGAATGCAATCGAAGCTGGCTTTGATGGGGTTGAAATTCATGGAGCTAAGGGTTACCTTATTGATCAGTTTATGAAAGACCAAGTGAATGATCGAACAGACCAATATGGTGGATCTCTAGAGAATCGCCGCCGATTTGCTCTGGAAATCATTGAAGCAGTTGTTAATGAAATAGGAGCAGACAAAGTTGGAATTAGATTATCTCCATTTGCCGACTATATGGAATCAGGGGATTCAAACCCTGAAGCATTAGGCCTTTATATGGTTCAATCCTTAAACAAATATGGGATTCTGTACTGCCATGTGATTGAGCCAAGAATGAAGGAAGCTGGAGTAAAGAGTGAAAGTGCTGGCAGTCTTCTACCCATGAGAGAAGCTTTTAGTGGTACCTTCATGGCTAATGGTGGTTTTGACAGGGAAGATGGGAACAATGCAGTGGCTGAGGGTCGTGTAGATGTTATTGCTTACGGCCGTTGGTTCTTGTCTAATCCAGATTTGCCAAAGAGATTTGAGCTTAATGCTCCTCTAAACAAGTATGACAGAAGTACTTTCTATACTTCTGATCCAGTTGTTGGTTACACTGATTATCCATTTCTTGAAACCACTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

296

Amino Acids

32.83

Weight (kDa)

4.93

Isoelectric Point (pI)

44.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	2 - 269	2.2e-68	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17990 AT1G17990 AT1G18020
fragaria_vesca	FvH4_5g32750
malus_domestica	MD08G1216100.v1.1 MD08G1216200.v1.1 MD15G1401200.v1.1 MD15G1401300.v1.1 MD15G1401800.v1.1 MD15G1402400.v1.1 MD15G1402700.v1.1
prunus_persica	Prupe.1G465800_v2.0.a1 Prupe.1G548300_v2.0.a1 Prupe.1G548400_v2.0.a1 Prupe.1G548600_v2.0.a1 Prupe.1G548700_v2.0.a1 Prupe.1G548800_v2.0.a1 Prupe.1G548900_v2.0.a1 Prupe.1G549000_v2.0.a1 Prupe.7G200600_v2.0.a1
pyrus_communis	pycom08g18710 pycom08g18720 pycom15g35950 pycom15g35960 pycom15g35970 pycom15g36010 pycom15g36020
rosa_chinensis	RchiOBHm_Chr2g0094571 RchiOBHm_Chr2g0094601 RchiOBHm_Chr2g0167371 RchiOBHm_Chr7g0230371 RchiOBHm_Chr7g0230381 RchiOBHm_Chr7g0230411 RchiOBHm_Chr7g0230421
rosa_laevigata	RLG00000001497 RLG00000009949 RLG00000016505 RLG00000021711
rosa_multiflora	Rmu_co8113900.1_g000001 Rmu_sc0001840.1_g000007 Rmu_sc0002541.1_g000033 Rmu_sc0007103.1_g000019
rosa_roxburghii	Rroxscaffold_2G00083570
rosa_rugosa	Rorug02G0045500 Rorug02G0529800 Rorug07G0260300
rosa_samantha	Rh2BG093600 Rh2BG608200
rosa_wichuraiana	Rw2G049670 Rw7G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	665
AccB1I	GGYRCC	1 cut(s)	665
AccB7I	CCANNNNNTGG	1 cut(s)	851
AciI	CCGC	2 cut(s)	101, 409
AclWI	GGATC	2 cut(s)	400, 836
AcoI	YGGCCR	1 cut(s)	748
AcsI	RAATTY	2 cut(s)	209, 315
AcuI	CTGAAG	1 cut(s)	543
AfaI	GTAC	5 cut(s)	157, 183, 575, 667, 826
AfiI	CCNNNNNNNGG	2 cut(s)	541, 851
AgsI	TTSAA	8 cut(s)	32, 114, 128, 314, 434, 516, 548, 878
AjnI	CCWGG	1 cut(s)	4
AluBI	AGCT	6 cut(s)	143, 296, 326, 608, 656, 793
AluI	AGCT	6 cut(s)	143, 296, 326, 608, 656, 793
AlwI	GGATC	2 cut(s)	400, 836
AlwNI	CAGNNNCTG	1 cut(s)	719
AoxI	GGCC	2 cut(s)	532, 748
ApeKI	GCWGC	1 cut(s)	275
ApoI	RAATTY	2 cut(s)	209, 315
Asp700I	GAANNNNTTC	1 cut(s)	109
Asp718I	GGTACC	1 cut(s)	665
BanI	GGYRCC	1 cut(s)	665
BbsI	GAAGAC	1 cut(s)	629
BbvCI	CCTCAGC	1 cut(s)	720
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	3 cut(s)	53, 299, 695
BceAI	ACGGC	2 cut(s)	735, 763
BciT130I	CCWGG	1 cut(s)	6
BclI	TGATCA	1 cut(s)	343
BfaI	CTAG	1 cut(s)	398
BglII	AGATCT	1 cut(s)	90
BisI	GCNGC	2 cut(s)	276, 409
BlsI	GCNGC	2 cut(s)	277, 410
BmcAI	AGTACT	2 cut(s)	183, 826
Bme1390I	CCNGG	1 cut(s)	6
BmiI	GGNNCC	1 cut(s)	667
BmrFI	CCNGG	1 cut(s)	6
BmsI	GCATC	1 cut(s)	43
BpiI	GAAGAC	1 cut(s)	629
BpmI	CTGGAG	1 cut(s)	630
Bpu10I	CCTNAGC	2 cut(s)	327, 720
BpuEI	CTTGAG	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	2 cut(s)	541, 851
Bse1I	ACTGG	1 cut(s)	845
BseBI	CCWGG	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	221
BseLI	CCNNNNNNNGG	2 cut(s)	541, 851
BseMII	CTCAG	1 cut(s)	711
BseNI	ACTGG	1 cut(s)	845
BseRI	GAGGAG	1 cut(s)	792
BseX3I	CGGCCG	1 cut(s)	748
BseXI	GCAGC	1 cut(s)	262
Bsh1285I	CGRYCG	1 cut(s)	751
BshFI	GGCC	2 cut(s)	534, 750
BshNI	GGYRCC	1 cut(s)	665
BsiEI	CGRYCG	1 cut(s)	751
BslI	CCNNNNNNNGG	2 cut(s)	541, 851
BsmI	GAATGC	1 cut(s)	289
BsnI	GGCC	2 cut(s)	534, 750
Bsp143I	GATC	6 cut(s)	90, 147, 343, 370, 392, 841
BspACI	CCGC	2 cut(s)	101, 409
BspANI	GGCC	2 cut(s)	534, 750
BspCNI	CTCAG	1 cut(s)	712
BspLI	GGNNCC	1 cut(s)	667
BspPI	GGATC	2 cut(s)	400, 836
BspT107I	GGYRCC	1 cut(s)	665
BsrI	ACTGG	1 cut(s)	845
BssECI	CCNNGG	1 cut(s)	221
BssMI	GATC	6 cut(s)	90, 147, 343, 370, 392, 841
BssT1I	CCWWGG	1 cut(s)	221
Bst2UI	CCWGG	1 cut(s)	6
Bst6I	CTCTTC	1 cut(s)	100
BstAPI	GCANNNNNTGC	2 cut(s)	62, 284
BstC8I	GCNNGC	3 cut(s)	99, 298, 631
BstDEI	CTNAG	2 cut(s)	327, 720
BstEII	GGTNACC	1 cut(s)	332
BstKTI	GATC	6 cut(s)	93, 150, 346, 373, 395, 844
BstMBI	GATC	6 cut(s)	90, 147, 343, 370, 392, 841
BstMCI	CGRYCG	1 cut(s)	751
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 284, 293
BstNI	CCWGG	1 cut(s)	6
BstNSI	RCATGY	1 cut(s)	101
BstPI	GGTNACC	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	4
BstV1I	GCAGC	1 cut(s)	262
BstV2I	GAAGAC	1 cut(s)	629
BstX2I	RGATCY	2 cut(s)	90, 392
BstXI	CCANNNNNNTGG	1 cut(s)	389
BstYI	RGATCY	2 cut(s)	90, 392
BstZI	CGGCCG	1 cut(s)	748
BsuRI	GGCC	2 cut(s)	534, 750
BtsI	GCAGTG	2 cut(s)	720, 882
BtsIMutI	CAGTG	3 cut(s)	720, 858, 882
Cac8I	GCNNGC	3 cut(s)	99, 298, 631
CaiI	CAGNNNCTG	1 cut(s)	719
Csp6I	GTAC	5 cut(s)	156, 182, 574, 666, 825
CviAII	CATG	7 cut(s)	36, 62, 98, 320, 581, 646, 673
CviQI	GTAC	5 cut(s)	156, 182, 574, 666, 825
DdeI	CTNAG	2 cut(s)	327, 720
DpnI	GATC	6 cut(s)	92, 149, 345, 372, 394, 843
DpnII	GATC	6 cut(s)	90, 147, 343, 370, 392, 841
EaeI	YGGCCR	1 cut(s)	748
EagI	CGGCCG	1 cut(s)	748
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
EclXI	CGGCCG	1 cut(s)	748
Eco130I	CCWWGG	1 cut(s)	221
Eco147I	AGGCCT	1 cut(s)	534
Eco52I	CGGCCG	1 cut(s)	748
Eco57I	CTGAAG	1 cut(s)	543
Eco91I	GGTNACC	1 cut(s)	332
EcoO65I	GGTNACC	1 cut(s)	332
EcoRI	GAATTC	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	221
ErhI	CCWWGG	1 cut(s)	221
FaeI	CATG	7 cut(s)	39, 65, 101, 323, 584, 649, 676
FatI	CATG	7 cut(s)	35, 61, 97, 319, 580, 645, 672
FauI	CCCGC	1 cut(s)	94
FbaI	TGATCA	1 cut(s)	343
Fnu4HI	GCNGC	2 cut(s)	276, 409
Fsp4HI	GCNGC	2 cut(s)	276, 409
FspBI	CTAG	1 cut(s)	398
GluI	GCNGC	2 cut(s)	276, 409
GsuI	CTGGAG	1 cut(s)	630
HaeIII	GGCC	2 cut(s)	534, 750
Hin1II	CATG	7 cut(s)	39, 65, 101, 323, 584, 649, 676
HindIII	AAGCTT	1 cut(s)	654
HinfI	GANTC	4 cut(s)	403, 503, 512, 568
Hpy188I	TCNGA	3 cut(s)	90, 147, 841
Hpy188III	TCNNGA	4 cut(s)	398, 422, 770, 875
HpyAV	CCTTC	2 cut(s)	595, 679
HpyCH4V	TGCA	4 cut(s)	56, 278, 287, 713
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 284, 293
HpyF3I	CTNAG	2 cut(s)	327, 720
Hsp92II	CATG	7 cut(s)	39, 65, 101, 323, 584, 649, 676
KpnI	GGTACC	1 cut(s)	669
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	6 cut(s)	90, 147, 343, 370, 392, 841
LmnI	GCTCC	4 cut(s)	148, 323, 455, 805
Lsp1109I	GCAGC	1 cut(s)	262
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	1 cut(s)	398
MaeIII	GTNAC	2 cut(s)	332, 854
MalI	GATC	6 cut(s)	92, 149, 345, 372, 394, 843
MboI	GATC	6 cut(s)	90, 147, 343, 370, 392, 841
MboII	GAAGA	4 cut(s)	73, 117, 629, 710
MflI	RGATCY	2 cut(s)	90, 392
MluCI	AATT	5 cut(s)	209, 227, 252, 315, 471
MmeI	TCCRAC	1 cut(s)	448
MnlI	CCTC	4 cut(s)	186, 228, 715, 813
MroXI	GAANNNNTTC	1 cut(s)	109
MseI	TTAA	5 cut(s)	230, 444, 554, 795, 889
MspR9I	CCNGG	1 cut(s)	6
Mva1269I	GAATGC	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	6
MwoI	GCNNNNNNNGC	3 cut(s)	62, 284, 293
NdeII	GATC	6 cut(s)	90, 147, 343, 370, 392, 841
NlaIII	CATG	7 cut(s)	39, 65, 101, 323, 584, 649, 676
NlaIV	GGNNCC	1 cut(s)	667
NspI	RCATGY	1 cut(s)	101
PaeI	GCATGC	1 cut(s)	101
PceI	AGGCCT	1 cut(s)	534
PctI	GAATGC	1 cut(s)	289
PdmI	GAANNNNTTC	1 cut(s)	109
PfeI	GAWTC	4 cut(s)	403, 503, 512, 568
PflMI	CCANNNNNTGG	1 cut(s)	851
PkrI	GCNGC	2 cut(s)	277, 410
Psp6I	CCWGG	1 cut(s)	4
PspEI	GGTNACC	1 cut(s)	332
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	667
PstNI	CAGNNNCTG	1 cut(s)	719
PsuI	RGATCY	2 cut(s)	90, 392
RsaI	GTAC	5 cut(s)	157, 183, 575, 667, 826
RsaNI	GTAC	5 cut(s)	156, 182, 574, 666, 825
SaqAI	TTAA	5 cut(s)	230, 444, 554, 795, 889
SatI	GCNGC	2 cut(s)	276, 409
Sau3AI	GATC	6 cut(s)	90, 147, 343, 370, 392, 841
ScaI	AGTACT	2 cut(s)	183, 826
ScrFI	CCNGG	1 cut(s)	6
SfaNI	GCATC	1 cut(s)	43
SmlI	CTYRAG	1 cut(s)	177
SmoI	CTYRAG	1 cut(s)	177
SphI	GCATGC	1 cut(s)	101
Sse9I	AATT	5 cut(s)	209, 227, 252, 315, 471
SseBI	AGGCCT	1 cut(s)	534
SsiI	CCGC	2 cut(s)	101, 409
SspMI	CTAG	1 cut(s)	398
StuI	AGGCCT	1 cut(s)	534
StyD4I	CCNGG	1 cut(s)	4
StyI	CCWWGG	1 cut(s)	221
TaqI	TCGA	2 cut(s)	291, 373
TasI	AATT	5 cut(s)	209, 227, 252, 315, 471
TatI	WGTACW	4 cut(s)	155, 181, 573, 824
TauI	GCSGC	1 cut(s)	411
TfiI	GAWTC	4 cut(s)	403, 503, 512, 568
Tru1I	TTAA	5 cut(s)	230, 444, 554, 795, 889
Tru9I	TTAA	5 cut(s)	230, 444, 554, 795, 889
TscAI	CASTG	3 cut(s)	720, 865, 889
TseI	GCWGC	1 cut(s)	275
TspDTI	ATGAA	7 cut(s)	50, 255, 308, 368, 462, 614, 661
TspRI	CASTG	3 cut(s)	720, 865, 889
Van91I	CCANNNNNTGG	1 cut(s)	851
XapI	RAATTY	2 cut(s)	209, 315
XbaI	TCTAGA	1 cut(s)	397
XceI	RCATGY	1 cut(s)	101
XmnI	GAANNNNTTC	1 cut(s)	109
XspI	CTAG	1 cut(s)	398
ZrmI	AGTACT	2 cut(s)	183, 826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.