RchiOBHm_Chr2g0094601

12-oxophytodienoate reductase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
7550068 .. 7552522
2455 bp
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UTR
Exon/CDS
Intron
PRQ46960

Sequence Viewer

Length: 291 bp
ATGTCAAGGTCGAAAAGTCAAGGGGTCGACCAGTCAAGAAACTGTTCACTGCCACTGGACATAGGGATTTTATCTCAAGCTAGCCCTGATTTGGTGTTGAGGTTTAAGCTGAATGCTCCTTTGAACAAGTATATTAAGGAAACTTTCTACACCAATGACCCTGTAGTTGGATGCACAGACTACCCTTTTCTTAACAGAGAAAGTGTGAAAGAGGATGAGCGTTCCTCCTTTGATTTTGATGCTGTTGAAATTGTTCTTGTTCGTTTGGATGAACAAAACCTTCACATATAG

Protein Analysis

96

Amino Acids

10.95

Weight (kDa)

4.83

Isoelectric Point (pI)

70.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 27
AfiI CCNNNNNNNGG 2 cut(s) 91, 167
AgsI TTSAA 2 cut(s) 124, 248
AluBI AGCT 2 cut(s) 80, 109
AluI AGCT 2 cut(s) 80, 109
Asp700I GAANNNNTTC 2 cut(s) 43, 252
AsuNHI GCTAGC 1 cut(s) 80
BfaI CTAG 1 cut(s) 81
BfmI CTRYAG 1 cut(s) 162
BmsI GCATC 2 cut(s) 161, 229
BmtI GCTAGC 1 cut(s) 84
BplI GAGNNNNNCTC 2 cut(s) 209, 241
BpuEI CTTGAG 1 cut(s) 60
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 167
Bse1I ACTGG 2 cut(s) 31, 60
BseGI GGATG 3 cut(s) 176, 220, 274
BseLI CCNNNNNNNGG 2 cut(s) 91, 167
BseNI ACTGG 2 cut(s) 31, 60
BslI CCNNNNNNNGG 2 cut(s) 91, 167
BsmI GAATGC 1 cut(s) 118
BspOI GCTAGC 1 cut(s) 84
BsrI ACTGG 2 cut(s) 31, 60
Bst4CI ACNGT 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 82
BstF5I GGATG 3 cut(s) 176, 220, 274
BstSFI CTRYAG 1 cut(s) 162
BtsCI GGATG 3 cut(s) 176, 220, 274
BtsI GCAGTG 1 cut(s) 47
BtsIMutI CAGTG 2 cut(s) 47, 53
Cac8I GCNNGC 1 cut(s) 82
CviJI RGCY 3 cut(s) 80, 84, 109
CviKI_1 RGCY 3 cut(s) 80, 84, 109
FaiI YATR 4 cut(s) 62, 132, 287, 289
FblI GTMKAC 1 cut(s) 27
FokI GGATG 3 cut(s) 183, 227, 281
FspBI CTAG 1 cut(s) 81
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
Hpy166II GTNNAC 2 cut(s) 28, 47
Hpy188III TCNNGA 1 cut(s) 36
Hpy8I GTNNAC 2 cut(s) 28, 47
HpyAV CCTTC 1 cut(s) 290
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4V TGCA 1 cut(s) 174
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 4 cut(s) 41, 44, 99, 174
LweI GCATC 2 cut(s) 161, 229
MaeI CTAG 1 cut(s) 81
MluCI AATT 1 cut(s) 249
MmeI TCCRAC 1 cut(s) 148
MnlI CCTC 3 cut(s) 93, 205, 235
MroXI GAANNNNTTC 2 cut(s) 43, 252
MseI TTAA 3 cut(s) 105, 135, 192
Mva1269I GAATGC 1 cut(s) 118
NheI GCTAGC 1 cut(s) 80
PctI GAATGC 1 cut(s) 118
PdmI GAANNNNTTC 2 cut(s) 43, 252
SalI GTCGAC 1 cut(s) 26
SaqAI TTAA 3 cut(s) 105, 135, 192
SetI ASST 5 cut(s) 11, 82, 104, 111, 282
SfaNI GCATC 2 cut(s) 161, 229
SfcI CTRYAG 1 cut(s) 162
SmlI CTYRAG 1 cut(s) 75
SmoI CTYRAG 1 cut(s) 75
Sse9I AATT 1 cut(s) 249
SspMI CTAG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 44
TaqI TCGA 2 cut(s) 11, 27
TasI AATT 1 cut(s) 249
Tru1I TTAA 3 cut(s) 105, 135, 192
Tru9I TTAA 3 cut(s) 105, 135, 192
TscAI CASTG 2 cut(s) 54, 60
TspDTI ATGAA 1 cut(s) 285
TspRI CASTG 2 cut(s) 54, 60
XmiI GTMKAC 1 cut(s) 27
XmnI GAANNNNTTC 2 cut(s) 43, 252
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.