Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001555

Physical Location & Seq

Genomic Coordinates Reverse (-)

50230981 .. 50234845

Gene Structure 3865 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1401300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGTCTGCTGCTGCTCAACCTCCCACAATTCCTCTCCTCACTCCCTACAAATTGGGAAACTTCAATCTTTCTCATAGAATTGTTTTAGCACCATTGACCAGACAGAGATCATACAACAATGTTCCTCAACCACATGCTATCTTATATTACTCTCAGAGAACTTCGAACGGGGGTCTTCTCATAGCTGAAGCCACTGGAGTTTCCAACACAGCTCAAGGGTACCCGAACACACCTGGTATATGGACAAAGGAGCAAGTTGAAGCCTGGAAACCCATTGTTGATGCTGTTCATGCTAAAGGTGGCCTCTTCTTCTGTCAGATTTGGCATGTTGGAAGGGTTTCTAATAGCGGTTATCAACCAAATGGGCAAGCTCCAATATCTTCTACTGACAAGCCGATACGATTAAATGGCATCGATGCCTCTGAATTCACGCCTCCAAGACGATTAAGGACAGATGAAATTCCACAAATTGTCAATGATTTTAGACTTGCTGCAAGGAATTCTATTGAAGCTGGCTTCGATGGAGTTGAAATTCATGGGGCGCATGGCTACCTTCTTGATCAGTTTCTGAAAGATCATGTGAATGATCGAACAGACCAATATGGTGGATCTCTAGAGAATCGTTGCCGCCTTCCTCTGGAAGTTGTTGAAGCTGTCGCTAACGAAATAGGAGCAGATAAAGTTGGAATTAGATTATCTCCATTTGCTGACTATATGGACTCAGGGGATTCAAATCCAAAAGAATTAGGCCTCTATATGGCCAATGCCTTGAACAAATATGGAATCGTGTACTGCCACATGGTTGAGCCGAGGATGAAGACAATGGGGGAAAAAGATGAAACCCACCAGAGTCTTCTTCCCATGAGAAAGTCTTTCCATGGTACCTTCATTGCTGCTGGTGGTTATGATAGGGAAGATGGAAACAGTGCTGTGGCCAAGGGCAGTGCAGATCTTATTGCTTATGGCCGTATTTTCTTGGCGAATCCAGATTTGCCAAAGAGATTTGAACTTAATGCTCCTCTAAACAAGTACAACAGAGAGACATTCTACATACCTGATCCCGTCATTGGTTACACTGATTATCCATTTCTTGAAGCCACCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

369

Amino Acids

40.74

Weight (kDa)

6.21

Isoelectric Point (pI)

29.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	12 - 341	3e-90	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17990 AT1G17990 AT1G18020
fragaria_vesca	FvH4_5g32750
malus_domestica	MD08G1216100.v1.1 MD08G1216200.v1.1 MD15G1401200.v1.1 MD15G1401300.v1.1 MD15G1401800.v1.1 MD15G1402400.v1.1 MD15G1402700.v1.1
prunus_persica	Prupe.1G465800_v2.0.a1 Prupe.1G548300_v2.0.a1 Prupe.1G548400_v2.0.a1 Prupe.1G548600_v2.0.a1 Prupe.1G548700_v2.0.a1 Prupe.1G548800_v2.0.a1 Prupe.1G548900_v2.0.a1 Prupe.1G549000_v2.0.a1 Prupe.7G200600_v2.0.a1
pyrus_communis	pycom08g18710 pycom08g18720 pycom15g35950 pycom15g35960 pycom15g35970 pycom15g36010 pycom15g36020
rosa_chinensis	RchiOBHm_Chr2g0094571 RchiOBHm_Chr2g0094601 RchiOBHm_Chr2g0167371 RchiOBHm_Chr7g0230371 RchiOBHm_Chr7g0230381 RchiOBHm_Chr7g0230411 RchiOBHm_Chr7g0230421
rosa_laevigata	RLG00000001497 RLG00000009949 RLG00000016505 RLG00000021711
rosa_multiflora	Rmu_co8113900.1_g000001 Rmu_sc0001840.1_g000007 Rmu_sc0002541.1_g000033 Rmu_sc0007103.1_g000019
rosa_roxburghii	Rroxscaffold_2G00083570
rosa_rugosa	Rorug02G0045500 Rorug02G0529800 Rorug07G0260300
rosa_samantha	Rh2BG093600 Rh2BG608200
rosa_wichuraiana	Rw2G049670 Rw7G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	219, 881
AccB1I	GGYRCC	2 cut(s)	219, 881
AciI	CCGC	2 cut(s)	348, 628
AclWI	GGATC	2 cut(s)	616, 1052
AcoI	YGGCCR	3 cut(s)	759, 933, 964
AcsI	RAATTY	4 cut(s)	425, 459, 499, 531
AcuI	CTGAAG	1 cut(s)	207
AfaI	GTAC	4 cut(s)	221, 791, 883, 1031
AfiI	CCNNNNNNNGG	3 cut(s)	637, 757, 1067
AgsI	TTSAA	9 cut(s)	64, 260, 509, 530, 650, 732, 772, 1007, 1094
AjnI	CCWGG	2 cut(s)	232, 263
AluBI	AGCT	5 cut(s)	185, 212, 371, 512, 653
AluI	AGCT	5 cut(s)	185, 212, 371, 512, 653
Alw26I	GTCTC	1 cut(s)	1034
AlwI	GGATC	2 cut(s)	616, 1052
AlwNI	CAGNNNCTG	1 cut(s)	568
AoxI	GGCC	5 cut(s)	301, 748, 759, 933, 964
ApeKI	GCWGC	4 cut(s)	8, 11, 491, 893
ApoI	RAATTY	4 cut(s)	425, 459, 499, 531
Asp700I	GAANNNNTTC	1 cut(s)	337
Asp718I	GGTACC	2 cut(s)	219, 881
AspLEI	GCGC	1 cut(s)	544
AsuII	TTCGAA	1 cut(s)	164
BalI	TGGCCA	2 cut(s)	761, 935
BanI	GGYRCC	2 cut(s)	219, 881
BbsI	GAAGAC	3 cut(s)	167, 824, 845
BbvI	GCAGC	2 cut(s)	478, 880
BccI	CCATC	2 cut(s)	515, 911
BceAI	ACGGC	1 cut(s)	951
BciT130I	CCWGG	2 cut(s)	234, 265
BclI	TGATCA	1 cut(s)	559
BcoDI	GTCTC	1 cut(s)	1034
BfaI	CTAG	1 cut(s)	614
BglII	AGATCT	1 cut(s)	949
BisI	GCNGC	5 cut(s)	9, 12, 492, 628, 894
BlsI	GCNGC	5 cut(s)	10, 13, 493, 629, 895
Bme1390I	CCNGG	2 cut(s)	234, 265
BmiI	GGNNCC	2 cut(s)	221, 883
BmrFI	CCNGG	2 cut(s)	234, 265
BmsI	GCATC	3 cut(s)	271, 406, 420
BpiI	GAAGAC	3 cut(s)	167, 824, 845
BpmI	CTGGAG	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	198
Bsa29I	ATCGAT	1 cut(s)	414
BsaBI	GATNNNNATC	1 cut(s)	732
BsaJI	CCNNGG	3 cut(s)	809, 877, 936
Bsc4I	CCNNNNNNNGG	3 cut(s)	637, 757, 1067
Bse1I	ACTGG	1 cut(s)	199
Bse3DI	GCAATG	1 cut(s)	888
Bse8I	GATNNNNATC	1 cut(s)	732
BseBI	CCWGG	2 cut(s)	234, 265
BseCI	ATCGAT	1 cut(s)	414
BseDI	CCNNGG	3 cut(s)	809, 877, 936
BseGI	GGATG	1 cut(s)	819
BseJI	GATNNNNATC	1 cut(s)	732
BseLI	CCNNNNNNNGG	3 cut(s)	637, 757, 1067
BseMI	GCAATG	1 cut(s)	888
BseMII	CTCAG	2 cut(s)	167, 735
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	2 cut(s)	26, 1008
BseXI	GCAGC	2 cut(s)	478, 880
BsgI	GTGCAG	1 cut(s)	966
BshFI	GGCC	5 cut(s)	303, 750, 761, 935, 966
BshNI	GGYRCC	2 cut(s)	219, 881
BshVI	ATCGAT	1 cut(s)	414
BslI	CCNNNNNNNGG	3 cut(s)	637, 757, 1067
BsmAI	GTCTC	1 cut(s)	1034
BsnI	GGCC	5 cut(s)	303, 750, 761, 935, 966
Bsp119I	TTCGAA	1 cut(s)	164
Bsp143I	GATC	7 cut(s)	107, 559, 574, 586, 608, 949, 1057
Bsp19I	CCATGG	1 cut(s)	877
BspACI	CCGC	2 cut(s)	348, 628
BspANI	GGCC	5 cut(s)	303, 750, 761, 935, 966
BspCNI	CTCAG	2 cut(s)	166, 734
BspDI	ATCGAT	1 cut(s)	414
BspLI	GGNNCC	2 cut(s)	221, 883
BspPI	GGATC	2 cut(s)	616, 1052
BspT104I	TTCGAA	1 cut(s)	164
BspT107I	GGYRCC	2 cut(s)	219, 881
BsrDI	GCAATG	1 cut(s)	888
BsrI	ACTGG	1 cut(s)	199
BssECI	CCNNGG	3 cut(s)	809, 877, 936
BssMI	GATC	7 cut(s)	107, 559, 574, 586, 608, 949, 1057
BssT1I	CCWWGG	2 cut(s)	877, 936
Bst2UI	CCWGG	2 cut(s)	234, 265
Bst4CI	ACNGT	1 cut(s)	926
Bst6I	CTCTTC	1 cut(s)	311
BstBI	TTCGAA	1 cut(s)	164
BstC8I	GCNNGC	2 cut(s)	369, 514
BstDEI	CTNAG	2 cut(s)	153, 721
BstDSI	CCRYGG	1 cut(s)	877
BstF5I	GGATG	1 cut(s)	819
BstHHI	GCGC	1 cut(s)	544
BstKTI	GATC	7 cut(s)	110, 562, 577, 589, 611, 952, 1060
BstMAI	GTCTC	1 cut(s)	1034
BstMBI	GATC	7 cut(s)	107, 559, 574, 586, 608, 949, 1057
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	2 cut(s)	234, 265
BstNSI	RCATGY	2 cut(s)	137, 329
BstSCI	CCNGG	2 cut(s)	232, 263
BstV1I	GCAGC	2 cut(s)	478, 880
BstV2I	GAAGAC	3 cut(s)	167, 824, 845
BstX2I	RGATCY	2 cut(s)	608, 949
BstXI	CCANNNNNNTGG	1 cut(s)	605
BstYI	RGATCY	2 cut(s)	608, 949
Bsu15I	ATCGAT	1 cut(s)	414
BsuRI	GGCC	5 cut(s)	303, 750, 761, 935, 966
BsuTUI	ATCGAT	1 cut(s)	414
BtgI	CCRYGG	1 cut(s)	877
BtsCI	GGATG	1 cut(s)	819
BtsI	GCAGTG	1 cut(s)	949
BtsIMutI	CAGTG	4 cut(s)	192, 931, 949, 1074
Cac8I	GCNNGC	2 cut(s)	369, 514
CaiI	CAGNNNCTG	1 cut(s)	568
CfoI	GCGC	1 cut(s)	544
ClaI	ATCGAT	1 cut(s)	414
CsiI	ACCWGGT	1 cut(s)	232
Csp6I	GTAC	4 cut(s)	220, 790, 882, 1030
CviAII	CATG	9 cut(s)	134, 290, 326, 536, 545, 578, 799, 862, 878
CviQI	GTAC	4 cut(s)	220, 790, 882, 1030
DdeI	CTNAG	2 cut(s)	153, 721
DpnI	GATC	7 cut(s)	109, 561, 576, 588, 610, 951, 1059
DpnII	GATC	7 cut(s)	107, 559, 574, 586, 608, 949, 1057
EaeI	YGGCCR	3 cut(s)	759, 933, 964
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
Eco130I	CCWWGG	2 cut(s)	877, 936
Eco147I	AGGCCT	1 cut(s)	750
Eco57I	CTGAAG	1 cut(s)	207
EcoRI	GAATTC	2 cut(s)	425, 499
EcoRII	CCWGG	2 cut(s)	232, 263
EcoT14I	CCWWGG	2 cut(s)	877, 936
ErhI	CCWWGG	2 cut(s)	877, 936
FaeI	CATG	9 cut(s)	137, 293, 329, 539, 548, 581, 802, 865, 881
FatI	CATG	9 cut(s)	133, 289, 325, 535, 544, 577, 798, 861, 877
FbaI	TGATCA	1 cut(s)	559
Fnu4HI	GCNGC	5 cut(s)	9, 12, 492, 628, 894
FokI	GGATG	1 cut(s)	826
Fsp4HI	GCNGC	5 cut(s)	9, 12, 492, 628, 894
FspBI	CTAG	1 cut(s)	614
GlaI	GCGC	1 cut(s)	543
GluI	GCNGC	5 cut(s)	9, 12, 492, 628, 894
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	5 cut(s)	303, 750, 761, 935, 966
HhaI	GCGC	1 cut(s)	544
Hin1II	CATG	9 cut(s)	137, 293, 329, 539, 548, 581, 802, 865, 881
Hin6I	GCGC	1 cut(s)	542
HinP1I	GCGC	1 cut(s)	542
HinfI	GANTC	6 cut(s)	619, 719, 728, 783, 850, 982
Hpy166II	GTNNAC	1 cut(s)	790
Hpy188I	TCNGA	4 cut(s)	156, 318, 424, 570
Hpy188III	TCNNGA	5 cut(s)	557, 614, 638, 986, 1091
Hpy8I	GTNNAC	1 cut(s)	790
HpyAV	CCTTC	4 cut(s)	327, 563, 641, 895
HpyCH4III	ACNGT	1 cut(s)	926
HpyCH4V	TGCA	2 cut(s)	494, 947
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	2 cut(s)	153, 721
Hsp92II	CATG	9 cut(s)	137, 293, 329, 539, 548, 581, 802, 865, 881
HspAI	GCGC	1 cut(s)	542
KpnI	GGTACC	2 cut(s)	223, 885
Ksp22I	TGATCA	1 cut(s)	559
Kzo9I	GATC	7 cut(s)	107, 559, 574, 586, 608, 949, 1057
LmnI	GCTCC	4 cut(s)	250, 376, 671, 1021
Lsp1109I	GCAGC	2 cut(s)	478, 880
LweI	GCATC	3 cut(s)	271, 406, 420
MabI	ACCWGGT	1 cut(s)	232
MaeI	CTAG	1 cut(s)	614
MaeIII	GTNAC	1 cut(s)	1070
MalI	GATC	7 cut(s)	109, 561, 576, 588, 610, 951, 1059
MboI	GATC	7 cut(s)	107, 559, 574, 586, 608, 949, 1057
MboII	GAAGA	8 cut(s)	167, 298, 301, 372, 829, 845, 848, 926
MflI	RGATCY	2 cut(s)	608, 949
MlsI	TGGCCA	2 cut(s)	761, 935
MluNI	TGGCCA	2 cut(s)	761, 935
MlyI	GAGTC	2 cut(s)	713, 859
MmeI	TCCRAC	3 cut(s)	228, 310, 664
Mox20I	TGGCCA	2 cut(s)	761, 935
MroXI	GAANNNNTTC	1 cut(s)	337
MscI	TGGCCA	2 cut(s)	761, 935
MseI	TTAA	4 cut(s)	404, 446, 1011, 1105
MslI	CAYNNNNRTG	1 cut(s)	582
Msp20I	TGGCCA	2 cut(s)	761, 935
MspR9I	CCNGG	2 cut(s)	234, 265
MvaI	CCWGG	2 cut(s)	234, 265
MwoI	GCNNNNNNNGC	1 cut(s)	290
NcoI	CCATGG	1 cut(s)	877
NdeII	GATC	7 cut(s)	107, 559, 574, 586, 608, 949, 1057
NlaIII	CATG	9 cut(s)	137, 293, 329, 539, 548, 581, 802, 865, 881
NlaIV	GGNNCC	2 cut(s)	221, 883
NmeAIII	GCCGAG	1 cut(s)	834
NspI	RCATGY	2 cut(s)	137, 329
NspV	TTCGAA	1 cut(s)	164
PceI	AGGCCT	1 cut(s)	750
PdmI	GAANNNNTTC	1 cut(s)	337
PfeI	GAWTC	4 cut(s)	619, 728, 783, 982
PkrI	GCNGC	5 cut(s)	10, 13, 493, 629, 895
PleI	GAGTC	2 cut(s)	713, 858
PpsI	GAGTC	2 cut(s)	713, 858
Psp6I	CCWGG	2 cut(s)	232, 263
PspGI	CCWGG	2 cut(s)	232, 263
PspN4I	GGNNCC	2 cut(s)	221, 883
PstNI	CAGNNNCTG	1 cut(s)	568
PsuI	RGATCY	2 cut(s)	608, 949
RsaI	GTAC	4 cut(s)	221, 791, 883, 1031
RsaNI	GTAC	4 cut(s)	220, 790, 882, 1030
RseI	CAYNNNNRTG	1 cut(s)	582
SaqAI	TTAA	4 cut(s)	404, 446, 1011, 1105
SatI	GCNGC	5 cut(s)	9, 12, 492, 628, 894
Sau3AI	GATC	7 cut(s)	107, 559, 574, 586, 608, 949, 1057
SchI	GAGTC	2 cut(s)	713, 859
ScrFI	CCNGG	2 cut(s)	234, 265
SexAI	ACCWGGT	1 cut(s)	232
SfaNI	GCATC	3 cut(s)	271, 406, 420
SfuI	TTCGAA	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	582
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
SseBI	AGGCCT	1 cut(s)	750
SsiI	CCGC	2 cut(s)	348, 628
SspMI	CTAG	1 cut(s)	614
StuI	AGGCCT	1 cut(s)	750
StyD4I	CCNGG	2 cut(s)	232, 263
StyI	CCWWGG	2 cut(s)	877, 936
TaaI	ACNGT	1 cut(s)	926
TaqI	TCGA	4 cut(s)	164, 414, 519, 589
TatI	WGTACW	2 cut(s)	789, 1029
TauI	GCSGC	1 cut(s)	630
TfiI	GAWTC	4 cut(s)	619, 728, 783, 982
Tru1I	TTAA	4 cut(s)	404, 446, 1011, 1105
Tru9I	TTAA	4 cut(s)	404, 446, 1011, 1105
TscAI	CASTG	4 cut(s)	199, 931, 949, 1081
TseI	GCWGC	4 cut(s)	8, 11, 491, 893
TspDTI	ATGAA	6 cut(s)	278, 471, 524, 830, 852, 877
TspRI	CASTG	4 cut(s)	199, 931, 949, 1081
XapI	RAATTY	4 cut(s)	425, 459, 499, 531
XbaI	TCTAGA	1 cut(s)	613
XceI	RCATGY	2 cut(s)	137, 329
XmnI	GAANNNNTTC	1 cut(s)	337
XspI	CTAG	1 cut(s)	614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.