Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001555

Physical Location & Seq

Genomic Coordinates Forward (+)

44877999 .. 44881820

Gene Structure 3822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G548900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGCTGCTCAACCTCCCACAATCCCTCTCCTTACCCCTTACAAATTGGGAAAATTCAATCTTTCTCACAGAGTTGTTTTAGCGCCATTGACTAGACGGAGATCATACCACAATGTTCCTCAACCACATGCCATCTTATGTTACTCCCAAAGAACATCCAATGGGGGTCTTCTCATAGCTGAAGCCACAGGAGTTTCTGACACAGCTCAAGGGTACCCAGATACTCCTGGTATATGGACAAAGGAGCAAGTGGAAGCATGGAAACCCATTGTTGATGCCGTTCATGCTAAAGATGGTGTCTTCTTCTGTCAGATTTGGCATGTGGGGAGGGTTTCAAATAGTGGTTATCAACCAAATGGGCAAGCTCCAATCTCTTCTACTGACAAGCCAATACGATTAAATGGTATTGATACCAGTGAATTCACACCTCCAAGGCGATTAAGGACCGATGAAATTCCACAAATTGTCAATGATTTTAGACTCGCTGCAAAGAATGCTATTGAAGCTGGCTTTGATGGAGTTGAAATTCATGGGGGCCATGGCTACCTTCTTGATCAGTTTTTGAAAGATCAAGTGAACGATCGAACAGACCAATATGGTGGATCTCTAGAGAATCGTTGTCGATTTCCTTTGGAAGTCGTTGAAGCTGTTGTTAAAGAGATCGGAGCAGATAAAGTTGGAATTAAACTATCTCCATTTGATGACTATACGGACTCAGGGGATTCAAATCCAAATGCATTAGGCCTTTATATGGCCAATTCCTTGAACAAATATGGGATTCTGTACTGCCACATGGCTGAGCCGAGAATGGAGACAGTTGGAGAGAAAAGTGAAAGCCACCAGAGTCTTCTACCCATGAGAGAGGCTTTCAATGGTACCTTCATTGCTGCTGGTGGTTTTGACAGGGAAGACGGGAACAAAGCTGTGGCAGAGGGCCATGCAGATCTCATCGCATATGGACGTTGGTTTTTGGCTAATCCAGATTTGCCAAAAAGATTTGAGCTCAATGCTCCTCTAAACATGTACAATAGAGACACATTCTACCTATCGGATCCGGTTATTGGTTACACCGATTACCCATTTCTTGAAACCACTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

367

Amino Acids

40.6

Weight (kDa)

5.5

Isoelectric Point (pI)

34.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17990 AT1G17990 AT1G18020
fragaria_vesca	FvH4_5g32750
malus_domestica	MD08G1216100.v1.1 MD08G1216200.v1.1 MD15G1401200.v1.1 MD15G1401300.v1.1 MD15G1401800.v1.1 MD15G1402400.v1.1 MD15G1402700.v1.1
prunus_persica	Prupe.1G465800_v2.0.a1 Prupe.1G548300_v2.0.a1 Prupe.1G548400_v2.0.a1 Prupe.1G548600_v2.0.a1 Prupe.1G548700_v2.0.a1 Prupe.1G548800_v2.0.a1 Prupe.1G548900_v2.0.a1 Prupe.1G549000_v2.0.a1 Prupe.7G200600_v2.0.a1
pyrus_communis	pycom08g18710 pycom08g18720 pycom15g35950 pycom15g35960 pycom15g35970 pycom15g36010 pycom15g36020
rosa_chinensis	RchiOBHm_Chr2g0094571 RchiOBHm_Chr2g0094601 RchiOBHm_Chr2g0167371 RchiOBHm_Chr7g0230371 RchiOBHm_Chr7g0230381 RchiOBHm_Chr7g0230411 RchiOBHm_Chr7g0230421
rosa_laevigata	RLG00000001497 RLG00000009949 RLG00000016505 RLG00000021711
rosa_multiflora	Rmu_co8113900.1_g000001 Rmu_sc0001840.1_g000007 Rmu_sc0002541.1_g000033 Rmu_sc0007103.1_g000019
rosa_roxburghii	Rroxscaffold_2G00083570
rosa_rugosa	Rorug02G0045500 Rorug02G0529800 Rorug07G0260300
rosa_samantha	Rh2BG093600 Rh2BG608200
rosa_wichuraiana	Rw2G049670 Rw7G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	213, 875
AccB1I	GGYRCC	2 cut(s)	213, 875
AclWI	GGATC	3 cut(s)	610, 1046, 1059
AcoI	YGGCCR	1 cut(s)	753
AcsI	RAATTY	4 cut(s)	53, 419, 453, 525
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	4 cut(s)	215, 785, 877, 1025
AfiI	CCNNNNNNNGG	2 cut(s)	751, 1061
AflIII	ACRYGT	1 cut(s)	1020
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	7 cut(s)	179, 206, 365, 506, 647, 923, 1003
AluI	AGCT	7 cut(s)	179, 206, 365, 506, 647, 923, 1003
Alw21I	GWGCWC	1 cut(s)	1005
Alw26I	GTCTC	2 cut(s)	806, 1026
AlwI	GGATC	3 cut(s)	610, 1046, 1059
AoxI	GGCC	4 cut(s)	535, 742, 753, 934
ApeKI	GCWGC	3 cut(s)	5, 485, 887
ApoI	RAATTY	4 cut(s)	53, 419, 453, 525
Asp718I	GGTACC	2 cut(s)	213, 875
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	3 cut(s)	444, 535, 934
AvaII	GGWCC	1 cut(s)	444
BalI	TGGCCA	1 cut(s)	755
BamHI	GGATCC	1 cut(s)	1051
BanI	GGYRCC	2 cut(s)	213, 875
BanII	GRGCYC	1 cut(s)	1005
BbsI	GAAGAC	4 cut(s)	161, 292, 839, 915
Bbv12I	GWGCWC	1 cut(s)	1005
BbvI	GCAGC	2 cut(s)	472, 874
BccI	CCATC	3 cut(s)	140, 287, 509
BceAI	ACGGC	1 cut(s)	263
BciT130I	CCWGG	1 cut(s)	228
BclI	TGATCA	1 cut(s)	553
BcoDI	GTCTC	2 cut(s)	806, 1026
BfaI	CTAG	2 cut(s)	93, 608
BfoI	RGCGCY	1 cut(s)	86
BglII	AGATCT	1 cut(s)	943
BisI	GCNGC	3 cut(s)	6, 486, 888
BlpI	GCTNAGC	1 cut(s)	798
BlsI	GCNGC	3 cut(s)	7, 487, 889
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	1 cut(s)	444
BmgT120I	GGNCC	3 cut(s)	444, 535, 934
BmiI	GGNNCC	4 cut(s)	215, 536, 877, 1053
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	265
BpiI	GAAGAC	4 cut(s)	161, 292, 839, 915
Bpu1102I	GCTNAGC	1 cut(s)	798
BpuEI	CTTGAG	1 cut(s)	192
BsaBI	GATNNNNATC	1 cut(s)	726
BsaJI	CCNNGG	2 cut(s)	431, 538
BsaWI	WCCGGW	1 cut(s)	1054
Bsc4I	CCNNNNNNNGG	2 cut(s)	751, 1061
Bse1I	ACTGG	1 cut(s)	414
Bse3DI	GCAATG	1 cut(s)	882
Bse8I	GATNNNNATC	1 cut(s)	726
BseBI	CCWGG	1 cut(s)	228
BseDI	CCNNGG	2 cut(s)	431, 538
BseGI	GGATG	1 cut(s)	155
BseJI	GATNNNNATC	1 cut(s)	726
BseLI	CCNNNNNNNGG	2 cut(s)	751, 1061
BseMI	GCAATG	1 cut(s)	882
BseMII	CTCAG	2 cut(s)	729, 789
BseNI	ACTGG	1 cut(s)	414
BseRI	GAGGAG	1 cut(s)	1002
BseXI	GCAGC	2 cut(s)	472, 874
Bsh1285I	CGRYCG	1 cut(s)	583
BshFI	GGCC	4 cut(s)	537, 744, 755, 936
BshNI	GGYRCC	2 cut(s)	213, 875
BsiEI	CGRYCG	1 cut(s)	583
BsiHKAI	GWGCWC	1 cut(s)	1005
BsiSI	CCGG	1 cut(s)	1055
BslI	CCNNNNNNNGG	2 cut(s)	751, 1061
BsmAI	GTCTC	2 cut(s)	806, 1026
BsmI	GAATGC	1 cut(s)	499
BsnI	GGCC	4 cut(s)	537, 744, 755, 936
Bsp1286I	GDGCHC	1 cut(s)	1005
Bsp1407I	TGTACA	1 cut(s)	1023
Bsp143I	GATC	8 cut(s)	101, 553, 568, 580, 602, 660, 943, 1051
Bsp1720I	GCTNAGC	1 cut(s)	798
Bsp19I	CCATGG	1 cut(s)	538
BspANI	GGCC	4 cut(s)	537, 744, 755, 936
BspCNI	CTCAG	2 cut(s)	728, 790
BspLI	GGNNCC	4 cut(s)	215, 536, 877, 1053
BspPI	GGATC	3 cut(s)	610, 1046, 1059
BspT107I	GGYRCC	2 cut(s)	213, 875
BsrDI	GCAATG	1 cut(s)	882
BsrGI	TGTACA	1 cut(s)	1023
BsrI	ACTGG	1 cut(s)	414
BssECI	CCNNGG	2 cut(s)	431, 538
BssMI	GATC	8 cut(s)	101, 553, 568, 580, 602, 660, 943, 1051
BssT1I	CCWWGG	2 cut(s)	431, 538
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	817
Bst6I	CTCTTC	1 cut(s)	379
BstAPI	GCANNNNNTGC	1 cut(s)	494
BstAUI	TGTACA	1 cut(s)	1023
BstC8I	GCNNGC	2 cut(s)	363, 508
BstDEI	CTNAG	2 cut(s)	715, 798
BstDSI	CCRYGG	1 cut(s)	538
BstF5I	GGATG	1 cut(s)	155
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	8 cut(s)	104, 556, 571, 583, 605, 663, 946, 1054
BstMAI	GTCTC	2 cut(s)	806, 1026
BstMBI	GATC	8 cut(s)	101, 553, 568, 580, 602, 660, 943, 1051
BstMCI	CGRYCG	1 cut(s)	583
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 494, 503
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	3 cut(s)	131, 323, 1024
BstSCI	CCNGG	1 cut(s)	226
BstV1I	GCAGC	2 cut(s)	472, 874
BstV2I	GAAGAC	4 cut(s)	161, 292, 839, 915
BstX2I	RGATCY	3 cut(s)	602, 943, 1051
BstXI	CCANNNNNNTGG	1 cut(s)	599
BstYI	RGATCY	3 cut(s)	602, 943, 1051
BsuRI	GGCC	4 cut(s)	537, 744, 755, 936
BtgI	CCRYGG	1 cut(s)	538
BtgZI	GCGATG	1 cut(s)	934
BtsCI	GGATG	1 cut(s)	155
BtsI	GCAGTG	1 cut(s)	1092
BtsIMutI	CAGTG	2 cut(s)	421, 1092
Cac8I	GCNNGC	2 cut(s)	363, 508
CfoI	GCGC	1 cut(s)	85
Cfr13I	GGNCC	3 cut(s)	444, 535, 934
Csp6I	GTAC	4 cut(s)	214, 784, 876, 1024
CviQI	GTAC	4 cut(s)	214, 784, 876, 1024
DdeI	CTNAG	2 cut(s)	715, 798
DpnI	GATC	8 cut(s)	103, 555, 570, 582, 604, 662, 945, 1053
DpnII	GATC	8 cut(s)	101, 553, 568, 580, 602, 660, 943, 1051
EaeI	YGGCCR	1 cut(s)	753
Eam1104I	CTCTTC	1 cut(s)	379
EarI	CTCTTC	1 cut(s)	379
Ecl136II	GAGCTC	1 cut(s)	1003
Eco130I	CCWWGG	2 cut(s)	431, 538
Eco147I	AGGCCT	1 cut(s)	744
Eco24I	GRGCYC	1 cut(s)	1005
Eco47I	GGWCC	1 cut(s)	444
Eco53kI	GAGCTC	1 cut(s)	1003
Eco57I	CTGAAG	1 cut(s)	201
EcoICRI	GAGCTC	1 cut(s)	1003
EcoRI	GAATTC	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	226
EcoT14I	CCWWGG	2 cut(s)	431, 538
EcoT22I	ATGCAT	1 cut(s)	739
EcoT38I	GRGCYC	1 cut(s)	1005
ErhI	CCWWGG	2 cut(s)	431, 538
FauNDI	CATATG	1 cut(s)	955
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	3 cut(s)	6, 486, 888
FokI	GGATG	1 cut(s)	142
FriOI	GRGCYC	1 cut(s)	1005
Fsp4HI	GCNGC	3 cut(s)	6, 486, 888
FspBI	CTAG	2 cut(s)	93, 608
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	3 cut(s)	6, 486, 888
HaeII	RGCGCY	1 cut(s)	86
HaeIII	GGCC	4 cut(s)	537, 744, 755, 936
HapII	CCGG	1 cut(s)	1055
HhaI	GCGC	1 cut(s)	85
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HinfI	GANTC	6 cut(s)	480, 613, 713, 722, 778, 844
HpaII	CCGG	1 cut(s)	1055
Hpy166II	GTNNAC	1 cut(s)	577
Hpy188I	TCNGA	4 cut(s)	199, 312, 665, 1051
Hpy188III	TCNNGA	4 cut(s)	551, 608, 980, 1085
Hpy8I	GTNNAC	1 cut(s)	577
HpyAV	CCTTC	2 cut(s)	557, 889
HpyCH4III	ACNGT	1 cut(s)	817
HpyCH4IV	ACGT	1 cut(s)	961
HpyCH4V	TGCA	3 cut(s)	488, 737, 941
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 494, 503
HpyF3I	CTNAG	2 cut(s)	715, 798
HpySE526I	ACGT	1 cut(s)	961
HspAI	GCGC	1 cut(s)	83
KpnI	GGTACC	2 cut(s)	217, 879
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	8 cut(s)	101, 553, 568, 580, 602, 660, 943, 1051
LmnI	GCTCC	4 cut(s)	244, 370, 665, 1015
Lsp1109I	GCAGC	2 cut(s)	472, 874
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	2 cut(s)	93, 608
MaeII	ACGT	1 cut(s)	961
MaeIII	GTNAC	2 cut(s)	140, 1064
MalI	GATC	8 cut(s)	103, 555, 570, 582, 604, 662, 945, 1053
MboI	GATC	8 cut(s)	101, 553, 568, 580, 602, 660, 943, 1051
MboII	GAAGA	6 cut(s)	161, 292, 295, 366, 839, 920
MflI	RGATCY	3 cut(s)	602, 943, 1051
MhlI	GDGCHC	1 cut(s)	1005
MlsI	TGGCCA	1 cut(s)	755
MluCI	AATT	8 cut(s)	44, 53, 419, 453, 462, 525, 681, 757
MluNI	TGGCCA	1 cut(s)	755
MlyI	GAGTC	3 cut(s)	474, 707, 853
MmeI	TCCRAC	2 cut(s)	658, 799
MnlI	CCTC	8 cut(s)	24, 36, 129, 321, 438, 856, 925, 1023
Mox20I	TGGCCA	1 cut(s)	755
Mph1103I	ATGCAT	1 cut(s)	739
MscI	TGGCCA	1 cut(s)	755
MseI	TTAA	5 cut(s)	398, 440, 654, 684, 1099
Msp20I	TGGCCA	1 cut(s)	755
MspI	CCGG	1 cut(s)	1055
MspR9I	CCNGG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	499
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	3 cut(s)	284, 494, 503
NcoI	CCATGG	1 cut(s)	538
NdeI	CATATG	1 cut(s)	955
NdeII	GATC	8 cut(s)	101, 553, 568, 580, 602, 660, 943, 1051
NlaIV	GGNNCC	4 cut(s)	215, 536, 877, 1053
NmeAIII	GCCGAG	1 cut(s)	828
NsiI	ATGCAT	1 cut(s)	739
NspI	RCATGY	3 cut(s)	131, 323, 1024
PceI	AGGCCT	1 cut(s)	744
PciI	ACATGT	1 cut(s)	1020
PctI	GAATGC	1 cut(s)	499
PfeI	GAWTC	3 cut(s)	613, 722, 778
PkrI	GCNGC	3 cut(s)	7, 487, 889
Ple19I	CGATCG	1 cut(s)	583
PleI	GAGTC	3 cut(s)	474, 707, 852
PpsI	GAGTC	3 cut(s)	474, 707, 852
PscI	ACATGT	1 cut(s)	1020
Psp124BI	GAGCTC	1 cut(s)	1005
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	4 cut(s)	215, 536, 877, 1053
PspPI	GGNCC	3 cut(s)	444, 535, 934
PsuI	RGATCY	3 cut(s)	602, 943, 1051
PvuI	CGATCG	1 cut(s)	583
RsaI	GTAC	4 cut(s)	215, 785, 877, 1025
RsaNI	GTAC	4 cut(s)	214, 784, 876, 1024
SacI	GAGCTC	1 cut(s)	1005
SaqAI	TTAA	5 cut(s)	398, 440, 654, 684, 1099
SatI	GCNGC	3 cut(s)	6, 486, 888
Sau3AI	GATC	8 cut(s)	101, 553, 568, 580, 602, 660, 943, 1051
Sau96I	GGNCC	3 cut(s)	444, 535, 934
SchI	GAGTC	3 cut(s)	474, 707, 853
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	1 cut(s)	1005
SfaNI	GCATC	1 cut(s)	265
SinI	GGWCC	1 cut(s)	444
SmlI	CTYRAG	1 cut(s)	207
SmoI	CTYRAG	1 cut(s)	207
Sse9I	AATT	8 cut(s)	44, 53, 419, 453, 462, 525, 681, 757
SseBI	AGGCCT	1 cut(s)	744
SspMI	CTAG	2 cut(s)	93, 608
SstI	GAGCTC	1 cut(s)	1005
StuI	AGGCCT	1 cut(s)	744
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	2 cut(s)	431, 538
TaaI	ACNGT	1 cut(s)	817
TaiI	ACGT	1 cut(s)	964
TaqI	TCGA	2 cut(s)	583, 622
TaqII	GACCGA	1 cut(s)	461
TasI	AATT	8 cut(s)	44, 53, 419, 453, 462, 525, 681, 757
TatI	WGTACW	2 cut(s)	783, 1023
TfiI	GAWTC	3 cut(s)	613, 722, 778
Tru1I	TTAA	5 cut(s)	398, 440, 654, 684, 1099
Tru9I	TTAA	5 cut(s)	398, 440, 654, 684, 1099
TscAI	CASTG	2 cut(s)	421, 1099
TseI	GCWGC	3 cut(s)	5, 485, 887
TspDTI	ATGAA	4 cut(s)	272, 465, 518, 871
TspGWI	ACGGA	2 cut(s)	112, 725
TspRI	CASTG	2 cut(s)	421, 1099
VpaK11BI	GGWCC	1 cut(s)	444
XapI	RAATTY	4 cut(s)	53, 419, 453, 525
XbaI	TCTAGA	1 cut(s)	607
XceI	RCATGY	3 cut(s)	131, 323, 1024
XspI	CTAG	2 cut(s)	93, 608
Zsp2I	ATGCAT	1 cut(s)	739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.