Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001555

Physical Location & Seq

Genomic Coordinates Reverse (-)

38850064 .. 38851532

Gene Structure 1469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G465800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGAAAGACCAAGTGAACGATCGAACAGATGAATATGGTGGATCGCTGGAGAATCGTTGCCGGTTTGCTCTGGAAATCGTTGAAGCTGTTGCTAATGAGATAGGAGCAGATAAAGTTGGAATTAGATTATCACCATTTGCAGACTATATGGAATCAGGGTATTCGAATCCGAAAGCATTAGGCCTTTATATGGCCAAATCCTTGAACAAATACGGGATCCTGTACTGCCATGTGGTTGAGCCAAGAATGAAGACAGTTGGAGACAAAAGTGAAACCCCTTACAGTCTTCTGCCCATGAGAGAAGCTTTTAAAGGTACCTTCATTGCTGCTGGTGGTTTTGACAGGGAAGATGGGAACAATGCTGTGGCAGAGGGTCGTGCAGATCTTATTGCTTATGGACGTTTGTTCTTGGCTAATCCAGATTTTCCCAAGAGATTTGAGCTTAATGCTCCTCTAAATAAGTACAACCGAGAGACATTCTATACATCTGATCCGGTGGCAAGAGGAAGGGGACAAGGAGGACCAACTTTGGACAACATTTCCCAAGATAATAGCATGGCCTCAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

190

Amino Acids

20.9

Weight (kDa)

5.32

Isoelectric Point (pI)

32.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17990 AT1G17990 AT1G18020
fragaria_vesca	FvH4_5g32750
malus_domestica	MD08G1216100.v1.1 MD08G1216200.v1.1 MD15G1401200.v1.1 MD15G1401300.v1.1 MD15G1401800.v1.1 MD15G1402400.v1.1 MD15G1402700.v1.1
prunus_persica	Prupe.1G465800_v2.0.a1 Prupe.1G548300_v2.0.a1 Prupe.1G548400_v2.0.a1 Prupe.1G548600_v2.0.a1 Prupe.1G548700_v2.0.a1 Prupe.1G548800_v2.0.a1 Prupe.1G548900_v2.0.a1 Prupe.1G549000_v2.0.a1 Prupe.7G200600_v2.0.a1
pyrus_communis	pycom08g18710 pycom08g18720 pycom15g35950 pycom15g35960 pycom15g35970 pycom15g36010 pycom15g36020
rosa_chinensis	RchiOBHm_Chr2g0094571 RchiOBHm_Chr2g0094601 RchiOBHm_Chr2g0167371 RchiOBHm_Chr7g0230371 RchiOBHm_Chr7g0230381 RchiOBHm_Chr7g0230411 RchiOBHm_Chr7g0230421
rosa_laevigata	RLG00000001497 RLG00000009949 RLG00000016505 RLG00000021711
rosa_multiflora	Rmu_co8113900.1_g000001 Rmu_sc0001840.1_g000007 Rmu_sc0002541.1_g000033 Rmu_sc0007103.1_g000019
rosa_roxburghii	Rroxscaffold_2G00083570
rosa_rugosa	Rorug02G0045500 Rorug02G0529800 Rorug07G0260300
rosa_samantha	Rh2BG093600 Rh2BG608200
rosa_wichuraiana	Rw2G049670 Rw7G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	314
AccB1I	GGYRCC	1 cut(s)	314
AclWI	GGATC	4 cut(s)	49, 211, 224, 485
AcoI	YGGCCR	1 cut(s)	192
AfaI	GTAC	3 cut(s)	224, 316, 464
AfiI	CCNNNNNNNGG	1 cut(s)	190
AgsI	TTSAA	2 cut(s)	83, 205
AluBI	AGCT	3 cut(s)	86, 305, 442
AluI	AGCT	3 cut(s)	86, 305, 442
Alw26I	GTCTC	2 cut(s)	255, 467
AlwI	GGATC	4 cut(s)	49, 211, 224, 485
AoxI	GGCC	3 cut(s)	181, 192, 558
ApeKI	GCWGC	1 cut(s)	326
Asp718I	GGTACC	1 cut(s)	314
AspS9I	GGNCC	1 cut(s)	521
AsuHPI	GGTGA	1 cut(s)	123
AsuII	TTCGAA	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	521
BalI	TGGCCA	1 cut(s)	194
BamHI	GGATCC	1 cut(s)	216
BanI	GGYRCC	1 cut(s)	314
BbsI	GAAGAC	2 cut(s)	257, 278
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	1 cut(s)	344
BcoDI	GTCTC	2 cut(s)	255, 467
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
Bme18I	GGWCC	1 cut(s)	521
BmgT120I	GGNCC	1 cut(s)	521
BmiI	GGNNCC	2 cut(s)	218, 316
BpiI	GAAGAC	2 cut(s)	257, 278
BpmI	CTGGAG	1 cut(s)	68
Bpu14I	TTCGAA	1 cut(s)	164
BsaWI	WCCGGW	1 cut(s)	493
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse118I	RCCGGY	1 cut(s)	60
Bse3DI	GCAATG	1 cut(s)	321
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMI	GCAATG	1 cut(s)	321
BseRI	GAGGAG	1 cut(s)	441
BseXI	GCAGC	1 cut(s)	313
BsgI	GTGCAG	1 cut(s)	399
Bsh1285I	CGRYCG	1 cut(s)	22
BshFI	GGCC	3 cut(s)	183, 194, 560
BshNI	GGYRCC	1 cut(s)	314
BsiEI	CGRYCG	1 cut(s)	22
BsiSI	CCGG	2 cut(s)	61, 494
BslFI	GGGAC	1 cut(s)	525
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	2 cut(s)	255, 467
BsmFI	GGGAC	1 cut(s)	525
BsnI	GGCC	3 cut(s)	183, 194, 560
Bsp119I	TTCGAA	1 cut(s)	164
Bsp143I	GATC	5 cut(s)	19, 41, 216, 382, 490
BspANI	GGCC	3 cut(s)	183, 194, 560
BspLI	GGNNCC	2 cut(s)	218, 316
BspPI	GGATC	4 cut(s)	49, 211, 224, 485
BspT104I	TTCGAA	1 cut(s)	164
BspT107I	GGYRCC	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	321
BsrFI	RCCGGY	1 cut(s)	60
BssAI	RCCGGY	1 cut(s)	60
BssMI	GATC	5 cut(s)	19, 41, 216, 382, 490
Bst4CI	ACNGT	2 cut(s)	256, 284
BstBI	TTCGAA	1 cut(s)	164
BstKTI	GATC	5 cut(s)	22, 44, 219, 385, 493
BstMAI	GTCTC	2 cut(s)	255, 467
BstMBI	GATC	5 cut(s)	19, 41, 216, 382, 490
BstMCI	CGRYCG	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	313
BstV2I	GAAGAC	2 cut(s)	257, 278
BstX2I	RGATCY	2 cut(s)	216, 382
BstYI	RGATCY	2 cut(s)	216, 382
BsuRI	GGCC	3 cut(s)	183, 194, 560
Cfr10I	RCCGGY	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	521
Csp6I	GTAC	3 cut(s)	223, 315, 463
CviAII	CATG	3 cut(s)	230, 295, 556
CviJI	RGCY	8 cut(s)	86, 183, 194, 241, 305, 413, 442, 560
CviKI_1	RGCY	8 cut(s)	86, 183, 194, 241, 305, 413, 442, 560
CviQI	GTAC	3 cut(s)	223, 315, 463
DpnI	GATC	5 cut(s)	21, 43, 218, 384, 492
DpnII	GATC	5 cut(s)	19, 41, 216, 382, 490
DraI	TTTAAA	1 cut(s)	310
EaeI	YGGCCR	1 cut(s)	192
Eco147I	AGGCCT	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	521
FaeI	CATG	3 cut(s)	233, 298, 559
FaqI	GGGAC	1 cut(s)	525
FatI	CATG	3 cut(s)	229, 294, 555
Fnu4HI	GCNGC	1 cut(s)	327
Fsp4HI	GCNGC	1 cut(s)	327
GluI	GCNGC	1 cut(s)	327
GsuI	CTGGAG	1 cut(s)	68
HaeIII	GGCC	3 cut(s)	183, 194, 560
HapII	CCGG	2 cut(s)	61, 494
Hin1II	CATG	3 cut(s)	233, 298, 559
HindIII	AAGCTT	1 cut(s)	303
HinfI	GANTC	3 cut(s)	52, 152, 166
HpaII	CCGG	2 cut(s)	61, 494
HphI	GGTGA	1 cut(s)	123
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	2 cut(s)	171, 490
Hpy188III	TCNNGA	2 cut(s)	71, 419
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	2 cut(s)	328, 501
HpyCH4III	ACNGT	2 cut(s)	256, 284
HpyCH4IV	ACGT	1 cut(s)	400
HpyCH4V	TGCA	2 cut(s)	140, 380
HpySE526I	ACGT	1 cut(s)	400
Hsp92II	CATG	3 cut(s)	233, 298, 559
KpnI	GGTACC	1 cut(s)	318
Kzo9I	GATC	5 cut(s)	19, 41, 216, 382, 490
LmnI	GCTCC	2 cut(s)	104, 454
LpnPI	CCDG	9 cut(s)	32, 56, 74, 141, 233, 315, 328, 432, 507
Lsp1109I	GCAGC	1 cut(s)	313
MaeII	ACGT	1 cut(s)	400
MalI	GATC	5 cut(s)	21, 43, 218, 384, 492
MboI	GATC	5 cut(s)	19, 41, 216, 382, 490
MboII	GAAGA	3 cut(s)	262, 278, 359
MflI	RGATCY	2 cut(s)	216, 382
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	1 cut(s)	120
MluNI	TGGCCA	1 cut(s)	194
MmeI	TCCRAC	2 cut(s)	97, 238
MnlI	CCTC	4 cut(s)	364, 462, 497, 512
Mox20I	TGGCCA	1 cut(s)	194
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	2 cut(s)	309, 444
Msp20I	TGGCCA	1 cut(s)	194
MspI	CCGG	2 cut(s)	61, 494
NdeII	GATC	5 cut(s)	19, 41, 216, 382, 490
NlaIII	CATG	3 cut(s)	233, 298, 559
NlaIV	GGNNCC	2 cut(s)	218, 316
NspV	TTCGAA	1 cut(s)	164
PceI	AGGCCT	1 cut(s)	183
PfeI	GAWTC	3 cut(s)	52, 152, 166
PkrI	GCNGC	1 cut(s)	328
Ple19I	CGATCG	1 cut(s)	22
PspN4I	GGNNCC	2 cut(s)	218, 316
PspPI	GGNCC	1 cut(s)	521
PsuI	RGATCY	2 cut(s)	216, 382
PvuI	CGATCG	1 cut(s)	22
RsaI	GTAC	3 cut(s)	224, 316, 464
RsaNI	GTAC	3 cut(s)	223, 315, 463
SaqAI	TTAA	2 cut(s)	309, 444
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	5 cut(s)	19, 41, 216, 382, 490
Sau96I	GGNCC	1 cut(s)	521
SetI	ASST	6 cut(s)	88, 307, 316, 320, 403, 444
SfuI	TTCGAA	1 cut(s)	164
SinI	GGWCC	1 cut(s)	521
Sse9I	AATT	1 cut(s)	120
SseBI	AGGCCT	1 cut(s)	183
StuI	AGGCCT	1 cut(s)	183
TaaI	ACNGT	2 cut(s)	256, 284
TaiI	ACGT	1 cut(s)	403
TaqI	TCGA	2 cut(s)	22, 164
TasI	AATT	1 cut(s)	120
TatI	WGTACW	2 cut(s)	222, 462
TfiI	GAWTC	3 cut(s)	52, 152, 166
Tru1I	TTAA	2 cut(s)	309, 444
Tru9I	TTAA	2 cut(s)	309, 444
TseI	GCWGC	1 cut(s)	326
TspDTI	ATGAA	4 cut(s)	17, 45, 263, 310
VpaK11BI	GGWCC	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.