Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001555

Physical Location & Seq

Genomic Coordinates Reverse (-)

44853876 .. 44855313

Gene Structure 1438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G548400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

CCACATGCCAGCATCTTATACTACTCTCAGAGAACATCTCAAGGGGGTCTTCTCATAGCTGAAGCCACTCTTGTTTCTGACGCAGATCAAGGGTGGGTGAATAATCCTGGTTTATGGACAAGGGAGCAAGTTGAAGCCTGGAAACCGATTGTTGATGCTGTCCACGCTAAAGGCGGTGTCTTCTTCTGTCAGATTTGGCATCCGGGGAGGGTTTCAAATAGTGGTTTCCAGCCAAAGGGGCAAGCTCCAATCTCTTCTACTGAAAAGCCACTAACCTCACAAATACTAACTAATGGCGTTGCTGTTGCTGAATACACACCTCCAAGACGATTAAGGACAGATGAGATTCCACAAATTGTCAATGATTTTAGACTTGCTGCAAGGAATGCTATCGAAGCTGGCTTTGACGGGGTTGAAATTCATGGGGCGCATGGCTACCTGATTGATCAGTTTATGAAAGATCAAGTGAACGATCGAACAGATGAATATGGTGGATCGCTGGAGAATTGTTGCCGGTTTGCTCTGGAAATCGTTGAAGCTGTTGCTAATGAGATAGGAGCAGATAAAGTTGGAATTAGATTATCTCCATTTGCAGACTATATGGAATCAGGGGATTCGAATCCGAAAGCATTAGGCCTTTATATGGCCAAATCCTTGAACAAATACGGGATCCTGTACTGCCATGTGGTTGAGCCAAGAATGAAGACAGTTGGAGACAAAAGTGAAACCCCTTACAGTCTTCTGCCCATGAGAGAAGAAGCTTTTAAAGGCACCTTCATTGCTGCTGGTGGTTTTGACAGGGAAGATGGGAACAATGCTGTGGCAGAGGGTCGTGCAGATCTTATTGCTTATGGACGTTTGTTCTTGGCTAATCCAGATTTGCCCAAGAGATTTGAGCTTAATGCTCCTCTAAATAAGTACAACCGAGAGACATTCTATACATCTGATCCGGTTATTGGTTACACTGATTATCCATTTCTTGAAACTACTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

332

Amino Acids

36.57

Weight (kDa)

5.11

Isoelectric Point (pI)

31.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17990 AT1G17990 AT1G18020
fragaria_vesca	FvH4_5g32750
malus_domestica	MD08G1216100.v1.1 MD08G1216200.v1.1 MD15G1401200.v1.1 MD15G1401300.v1.1 MD15G1401800.v1.1 MD15G1402400.v1.1 MD15G1402700.v1.1
prunus_persica	Prupe.1G465800_v2.0.a1 Prupe.1G548300_v2.0.a1 Prupe.1G548400_v2.0.a1 Prupe.1G548600_v2.0.a1 Prupe.1G548700_v2.0.a1 Prupe.1G548800_v2.0.a1 Prupe.1G548900_v2.0.a1 Prupe.1G549000_v2.0.a1 Prupe.7G200600_v2.0.a1
pyrus_communis	pycom08g18710 pycom08g18720 pycom15g35950 pycom15g35960 pycom15g35970 pycom15g36010 pycom15g36020
rosa_chinensis	RchiOBHm_Chr2g0094571 RchiOBHm_Chr2g0094601 RchiOBHm_Chr2g0167371 RchiOBHm_Chr7g0230371 RchiOBHm_Chr7g0230381 RchiOBHm_Chr7g0230411 RchiOBHm_Chr7g0230421
rosa_laevigata	RLG00000001497 RLG00000009949 RLG00000016505 RLG00000021711
rosa_multiflora	Rmu_co8113900.1_g000001 Rmu_sc0001840.1_g000007 Rmu_sc0002541.1_g000033 Rmu_sc0007103.1_g000019
rosa_roxburghii	Rroxscaffold_2G00083570
rosa_rugosa	Rorug02G0045500 Rorug02G0529800 Rorug07G0260300
rosa_samantha	Rh2BG093600 Rh2BG608200
rosa_wichuraiana	Rw2G049670 Rw7G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	770
AciI	CCGC	1 cut(s)	174
AclWI	GGATC	4 cut(s)	502, 664, 677, 941
AcoI	YGGCCR	1 cut(s)	645
AcsI	RAATTY	1 cut(s)	417
AcuI	CTGAAG	1 cut(s)	81
AfaI	GTAC	2 cut(s)	677, 920
AfiI	CCNNNNNNNGG	3 cut(s)	235, 643, 956
AgsI	TTSAA	6 cut(s)	134, 216, 416, 536, 658, 983
AjnI	CCWGG	2 cut(s)	106, 137
AluBI	AGCT	6 cut(s)	59, 245, 398, 539, 761, 898
AluI	AGCT	6 cut(s)	59, 245, 398, 539, 761, 898
Alw26I	GTCTC	2 cut(s)	708, 923
AlwI	GGATC	4 cut(s)	502, 664, 677, 941
AoxI	GGCC	2 cut(s)	634, 645
ApeKI	GCWGC	2 cut(s)	377, 782
ApoI	RAATTY	1 cut(s)	417
AspLEI	GCGC	1 cut(s)	430
AsuC2I	CCSGG	1 cut(s)	204
AsuHPI	GGTGA	1 cut(s)	109
AsuII	TTCGAA	1 cut(s)	617
BalI	TGGCCA	1 cut(s)	647
BamHI	GGATCC	1 cut(s)	669
BanI	GGYRCC	1 cut(s)	770
BbsI	GAAGAC	4 cut(s)	41, 172, 710, 731
BbvI	GCAGC	2 cut(s)	364, 769
BccI	CCATC	1 cut(s)	800
BciT130I	CCWGG	2 cut(s)	108, 139
BclI	TGATCA	1 cut(s)	445
BcnI	CCSGG	1 cut(s)	204
BcoDI	GTCTC	2 cut(s)	708, 923
BglI	GCCNNNNNGGC	1 cut(s)	238
BglII	AGATCT	1 cut(s)	838
BisI	GCNGC	2 cut(s)	378, 783
BlsI	GCNGC	2 cut(s)	379, 784
Bme1390I	CCNGG	3 cut(s)	108, 139, 204
BmiI	GGNNCC	2 cut(s)	671, 772
BmrFI	CCNGG	3 cut(s)	108, 139, 204
BmsI	GCATC	3 cut(s)	21, 145, 208
BpiI	GAAGAC	4 cut(s)	41, 172, 710, 731
BplI	GAGNNNNNCTC	2 cut(s)	22, 54
BpmI	CTGGAG	1 cut(s)	521
Bpu14I	TTCGAA	1 cut(s)	617
BpuEI	CTTGAG	1 cut(s)	24
BpuMI	CCSGG	1 cut(s)	204
BsaBI	GATNNNNATC	1 cut(s)	618
BsaJI	CCNNGG	1 cut(s)	203
BsaWI	WCCGGW	1 cut(s)	949
Bsc4I	CCNNNNNNNGG	3 cut(s)	235, 643, 956
Bse118I	RCCGGY	1 cut(s)	513
Bse3DI	GCAATG	1 cut(s)	777
Bse8I	GATNNNNATC	1 cut(s)	618
BseBI	CCWGG	2 cut(s)	108, 139
BseDI	CCNNGG	1 cut(s)	203
BseGI	GGATG	1 cut(s)	199
BseJI	GATNNNNATC	1 cut(s)	618
BseLI	CCNNNNNNNGG	3 cut(s)	235, 643, 956
BseMI	GCAATG	1 cut(s)	777
BseMII	CTCAG	1 cut(s)	41
BseRI	GAGGAG	1 cut(s)	897
BseXI	GCAGC	2 cut(s)	364, 769
BsgI	GTGCAG	1 cut(s)	855
Bsh1285I	CGRYCG	1 cut(s)	475
BshFI	GGCC	2 cut(s)	636, 647
BshNI	GGYRCC	1 cut(s)	770
BsiEI	CGRYCG	1 cut(s)	475
BsiSI	CCGG	3 cut(s)	203, 514, 950
BslI	CCNNNNNNNGG	3 cut(s)	235, 643, 956
BsmAI	GTCTC	2 cut(s)	708, 923
BsmI	GAATGC	1 cut(s)	391
BsnI	GGCC	2 cut(s)	636, 647
Bsp119I	TTCGAA	1 cut(s)	617
Bsp143I	GATC	8 cut(s)	85, 445, 460, 472, 494, 669, 838, 946
BspACI	CCGC	1 cut(s)	174
BspANI	GGCC	2 cut(s)	636, 647
BspCNI	CTCAG	1 cut(s)	40
BspLI	GGNNCC	2 cut(s)	671, 772
BspPI	GGATC	4 cut(s)	502, 664, 677, 941
BspT104I	TTCGAA	1 cut(s)	617
BspT107I	GGYRCC	1 cut(s)	770
BsrDI	GCAATG	1 cut(s)	777
BsrFI	RCCGGY	1 cut(s)	513
BssAI	RCCGGY	1 cut(s)	513
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	8 cut(s)	85, 445, 460, 472, 494, 669, 838, 946
Bst2UI	CCWGG	2 cut(s)	108, 139
Bst4CI	ACNGT	2 cut(s)	709, 737
Bst6I	CTCTTC	1 cut(s)	259
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstBI	TTCGAA	1 cut(s)	617
BstC8I	GCNNGC	3 cut(s)	10, 243, 400
BstDEI	CTNAG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	430
BstKTI	GATC	8 cut(s)	88, 448, 463, 475, 497, 672, 841, 949
BstMAI	GTCTC	2 cut(s)	708, 923
BstMBI	GATC	8 cut(s)	85, 445, 460, 472, 494, 669, 838, 946
BstMCI	CGRYCG	1 cut(s)	475
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 238, 386, 395
BstNI	CCWGG	2 cut(s)	108, 139
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	3 cut(s)	106, 137, 202
BstV1I	GCAGC	2 cut(s)	364, 769
BstV2I	GAAGAC	4 cut(s)	41, 172, 710, 731
BstX2I	RGATCY	2 cut(s)	669, 838
BstYI	RGATCY	2 cut(s)	669, 838
BsuRI	GGCC	2 cut(s)	636, 647
BtsCI	GGATG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	963
Cac8I	GCNNGC	3 cut(s)	10, 243, 400
CfoI	GCGC	1 cut(s)	430
Cfr10I	RCCGGY	1 cut(s)	513
CseI	GACGC	1 cut(s)	89
Csp6I	GTAC	2 cut(s)	676, 919
CviAII	CATG	5 cut(s)	5, 422, 431, 683, 748
CviQI	GTAC	2 cut(s)	676, 919
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	8 cut(s)	87, 447, 462, 474, 496, 671, 840, 948
DpnII	GATC	8 cut(s)	85, 445, 460, 472, 494, 669, 838, 946
DraI	TTTAAA	1 cut(s)	766
EaeI	YGGCCR	1 cut(s)	645
Eam1104I	CTCTTC	1 cut(s)	259
EarI	CTCTTC	1 cut(s)	259
Eco147I	AGGCCT	1 cut(s)	636
Eco57I	CTGAAG	1 cut(s)	81
EcoRII	CCWGG	2 cut(s)	106, 137
FaeI	CATG	5 cut(s)	8, 425, 434, 686, 751
FalI	AAGNNNNNCTT	4 cut(s)	33, 65, 54, 86
FatI	CATG	5 cut(s)	4, 421, 430, 682, 747
FbaI	TGATCA	1 cut(s)	445
Fnu4HI	GCNGC	2 cut(s)	378, 783
FokI	GGATG	1 cut(s)	186
Fsp4HI	GCNGC	2 cut(s)	378, 783
GlaI	GCGC	1 cut(s)	429
GluI	GCNGC	2 cut(s)	378, 783
GsuI	CTGGAG	1 cut(s)	521
HaeIII	GGCC	2 cut(s)	636, 647
HapII	CCGG	3 cut(s)	203, 514, 950
HgaI	GACGC	1 cut(s)	89
HhaI	GCGC	1 cut(s)	430
Hin1II	CATG	5 cut(s)	8, 425, 434, 686, 751
Hin6I	GCGC	1 cut(s)	428
HinP1I	GCGC	1 cut(s)	428
HindIII	AAGCTT	1 cut(s)	759
HinfI	GANTC	4 cut(s)	346, 605, 614, 619
HpaII	CCGG	3 cut(s)	203, 514, 950
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	2 cut(s)	163, 469
Hpy188I	TCNGA	5 cut(s)	30, 79, 192, 624, 946
Hpy188III	TCNNGA	3 cut(s)	524, 875, 980
Hpy8I	GTNNAC	2 cut(s)	163, 469
HpyAV	CCTTC	1 cut(s)	784
HpyCH4III	ACNGT	2 cut(s)	709, 737
HpyCH4IV	ACGT	1 cut(s)	856
HpyCH4V	TGCA	3 cut(s)	380, 593, 836
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 238, 386, 395
HpyF3I	CTNAG	1 cut(s)	27
HpySE526I	ACGT	1 cut(s)	856
Hsp92II	CATG	5 cut(s)	8, 425, 434, 686, 751
HspAI	GCGC	1 cut(s)	428
Ksp22I	TGATCA	1 cut(s)	445
Kzo9I	GATC	8 cut(s)	85, 445, 460, 472, 494, 669, 838, 946
LmnI	GCTCC	4 cut(s)	124, 250, 557, 910
Lsp1109I	GCAGC	2 cut(s)	364, 769
LweI	GCATC	3 cut(s)	21, 145, 208
MaeII	ACGT	1 cut(s)	856
MaeIII	GTNAC	1 cut(s)	959
MalI	GATC	8 cut(s)	87, 447, 462, 474, 496, 671, 840, 948
MboI	GATC	8 cut(s)	85, 445, 460, 472, 494, 669, 838, 946
MboII	GAAGA	8 cut(s)	41, 172, 175, 246, 715, 731, 767, 815
MflI	RGATCY	2 cut(s)	669, 838
MlsI	TGGCCA	1 cut(s)	647
MluCI	AATT	4 cut(s)	354, 417, 505, 573
MluNI	TGGCCA	1 cut(s)	647
MmeI	TCCRAC	2 cut(s)	550, 691
MnlI	CCTC	5 cut(s)	201, 286, 330, 820, 918
Mox20I	TGGCCA	1 cut(s)	647
MscI	TGGCCA	1 cut(s)	647
MseI	TTAA	4 cut(s)	332, 765, 900, 994
Msp20I	TGGCCA	1 cut(s)	647
MspI	CCGG	3 cut(s)	203, 514, 950
MspR9I	CCNGG	3 cut(s)	108, 139, 204
Mva1269I	GAATGC	1 cut(s)	391
MvaI	CCWGG	2 cut(s)	108, 139
MwoI	GCNNNNNNNGC	4 cut(s)	164, 238, 386, 395
NciI	CCSGG	1 cut(s)	204
NdeII	GATC	8 cut(s)	85, 445, 460, 472, 494, 669, 838, 946
NlaIII	CATG	5 cut(s)	8, 425, 434, 686, 751
NlaIV	GGNNCC	2 cut(s)	671, 772
NspI	RCATGY	1 cut(s)	8
NspV	TTCGAA	1 cut(s)	617
PceI	AGGCCT	1 cut(s)	636
PctI	GAATGC	1 cut(s)	391
PfeI	GAWTC	4 cut(s)	346, 605, 614, 619
PkrI	GCNGC	2 cut(s)	379, 784
Ple19I	CGATCG	1 cut(s)	475
Psp6I	CCWGG	2 cut(s)	106, 137
PspGI	CCWGG	2 cut(s)	106, 137
PspN4I	GGNNCC	2 cut(s)	671, 772
PsuI	RGATCY	2 cut(s)	669, 838
PvuI	CGATCG	1 cut(s)	475
RsaI	GTAC	2 cut(s)	677, 920
RsaNI	GTAC	2 cut(s)	676, 919
SaqAI	TTAA	4 cut(s)	332, 765, 900, 994
SatI	GCNGC	2 cut(s)	378, 783
Sau3AI	GATC	8 cut(s)	85, 445, 460, 472, 494, 669, 838, 946
ScrFI	CCNGG	3 cut(s)	108, 139, 204
SfaNI	GCATC	3 cut(s)	21, 145, 208
SfuI	TTCGAA	1 cut(s)	617
SmlI	CTYRAG	1 cut(s)	39
SmoI	CTYRAG	1 cut(s)	39
Sse9I	AATT	4 cut(s)	354, 417, 505, 573
SseBI	AGGCCT	1 cut(s)	636
SsiI	CCGC	1 cut(s)	174
StuI	AGGCCT	1 cut(s)	636
StyD4I	CCNGG	3 cut(s)	106, 137, 202
TaaI	ACNGT	2 cut(s)	709, 737
TaiI	ACGT	1 cut(s)	859
TaqI	TCGA	3 cut(s)	393, 475, 617
TasI	AATT	4 cut(s)	354, 417, 505, 573
TatI	WGTACW	2 cut(s)	675, 918
TfiI	GAWTC	4 cut(s)	346, 605, 614, 619
Tru1I	TTAA	4 cut(s)	332, 765, 900, 994
Tru9I	TTAA	4 cut(s)	332, 765, 900, 994
TscAI	CASTG	1 cut(s)	970
TseI	GCWGC	2 cut(s)	377, 782
TspDTI	ATGAA	5 cut(s)	410, 470, 498, 716, 766
TspRI	CASTG	1 cut(s)	970
XapI	RAATTY	1 cut(s)	417
XceI	RCATGY	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.