Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001555

Physical Location & Seq

Genomic Coordinates Reverse (-)

27893116 .. 27895415

Gene Structure 2300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1216100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGTCTGCTCAACCAGCACCTCCCACAATTCCTCTCCTTACTCCCTACAAACTGGGAAACTTCGATCTTTCTCATAGGATTGTTTTAGCACCGCTGACTAGACAGAGATCGTACAACAATGTTCCTCAGCCACATGCCGTCTTATATTACTCGCAGAGAACGTCAAAAGGGGGTCTTCTCATAGCTGAAGCTGTCGAAGTTTCGGATACTGCTCGAGGGTACGCGGATATGCCTGGTATTTGGACAAGGGAGCAAGTCGAAGCATGGAAACCTGTTGTTGACGCTGTTCACACTAAGGGCGGTGTCTTCTTCTGTCAGATTTGGCATGCCGGCAGGGTTTCAAATAGCGGTTTCCAGCCCAATGGGCAAGCTCCAATCTCTTGCACTGACAAGCCACTGACCCCCCAGCTACAGTCTAATGGCATTGACGTTGCTGAATTCACGCCTCCAAGGCGATTAGAGACAAATGAAATTCCACAAATTGTGAATGATTTTAGACTTGCTGCACGGAAGGCTATCGAAGCTGGCTTTGACGGGGTTGAAATTCACGGGGCCAACGGCTACATTATTGATCAGTTTCTTAAAGACCAAGTGAACGATCGAACAGACCATTACGGTGGCTCTCTAGAGAATCGTTGTCGATTTGCTCTGGAAATCGTTGAAGCTGTTGCTAATGAGATAGGAGCAGACAAAGTTGGACTTCGATTATCTCCATTTGCCGACTATATGGAGTCAGGGGATTCGGATCCTAACGCATTAGGCCTTTACATGGCGGAATCCTTGAACAAATACGGGATCTTGTACTGCCATGTGATTGAGCCAAGGATGAAGACACAGGGAGATATAAGTGAAAGCTCCGATAGTCTTGCGCCAATGAGAGAAGCATTCAAGGGTGCCTTCATCGCTGCAGGTGGTTACGAAAGGGAAGATGGGAACAAAGCCATTGCCGAGGGCCGTGCAGATCTTATTGCTTATGGTCGTTGGTTCTTGGCTAATCCGGATTTGCCAAAGAGATTTGAGCTTAACGCTCCCCTAAACAGGTACAATCGAGATACGTTCTACACATCTGATCCGGTAATTGGTTACACTGATTATCCATTTCTTGAAACCACGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

373

Amino Acids

41.21

Weight (kDa)

5.21

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	12 - 345	4.1e-88	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17990 AT1G17990 AT1G18020
fragaria_vesca	FvH4_5g32750
malus_domestica	MD08G1216100.v1.1 MD08G1216200.v1.1 MD15G1401200.v1.1 MD15G1401300.v1.1 MD15G1401800.v1.1 MD15G1402400.v1.1 MD15G1402700.v1.1
prunus_persica	Prupe.1G465800_v2.0.a1 Prupe.1G548300_v2.0.a1 Prupe.1G548400_v2.0.a1 Prupe.1G548600_v2.0.a1 Prupe.1G548700_v2.0.a1 Prupe.1G548800_v2.0.a1 Prupe.1G548900_v2.0.a1 Prupe.1G549000_v2.0.a1 Prupe.7G200600_v2.0.a1
pyrus_communis	pycom08g18710 pycom08g18720 pycom15g35950 pycom15g35960 pycom15g35970 pycom15g36010 pycom15g36020
rosa_chinensis	RchiOBHm_Chr2g0094571 RchiOBHm_Chr2g0094601 RchiOBHm_Chr2g0167371 RchiOBHm_Chr7g0230371 RchiOBHm_Chr7g0230381 RchiOBHm_Chr7g0230411 RchiOBHm_Chr7g0230421
rosa_laevigata	RLG00000001497 RLG00000009949 RLG00000016505 RLG00000021711
rosa_multiflora	Rmu_co8113900.1_g000001 Rmu_sc0001840.1_g000007 Rmu_sc0002541.1_g000033 Rmu_sc0007103.1_g000019
rosa_roxburghii	Rroxscaffold_2G00083570
rosa_rugosa	Rorug02G0045500 Rorug02G0529800 Rorug07G0260300
rosa_samantha	Rh2BG093600 Rh2BG608200
rosa_wichuraiana	Rw2G049670 Rw7G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	899
Acc36I	ACCTGC	1 cut(s)	899
AccB1I	GGYRCC	1 cut(s)	893
AccII	CGCG	1 cut(s)	224
AccIII	TCCGGA	1 cut(s)	997
AciI	CCGC	5 cut(s)	92, 224, 300, 348, 773
AclWI	GGATC	4 cut(s)	740, 753, 803, 1064
AcsI	RAATTY	3 cut(s)	437, 471, 543
AcuI	CTGAAG	1 cut(s)	207
AfaI	GTAC	4 cut(s)	113, 221, 803, 1043
AfiI	CCNNNNNNNGG	3 cut(s)	769, 1038, 1079
AgsI	TTSAA	6 cut(s)	342, 542, 662, 784, 889, 1106
AjnI	CCWGG	1 cut(s)	232
AluBI	AGCT	8 cut(s)	185, 191, 371, 409, 524, 665, 855, 1021
AluI	AGCT	8 cut(s)	185, 191, 371, 409, 524, 665, 855, 1021
Alw26I	GTCTC	1 cut(s)	455
AlwI	GGATC	4 cut(s)	740, 753, 803, 1064
Ama87I	CYCGRG	1 cut(s)	213
Aor13HI	TCCGGA	1 cut(s)	997
AoxI	GGCC	3 cut(s)	552, 760, 952
ApeKI	GCWGC	2 cut(s)	503, 905
ApoI	RAATTY	3 cut(s)	437, 471, 543
AspLEI	GCGC	1 cut(s)	871
AspS9I	GGNCC	2 cut(s)	552, 952
AvaI	CYCGRG	1 cut(s)	213
BamHI	GGATCC	1 cut(s)	745
BanI	GGYRCC	1 cut(s)	893
BbsI	GAAGAC	3 cut(s)	167, 298, 836
BbvCI	CCTCAGC	1 cut(s)	126
BbvI	GCAGC	2 cut(s)	490, 892
BccI	CCATC	1 cut(s)	923
BceAI	ACGGC	3 cut(s)	122, 574, 939
BcgI	CGANNNNNNTGC	4 cut(s)	848, 882, 938, 972
BciT130I	CCWGG	1 cut(s)	234
BciVI	GTATCC	1 cut(s)	199
BclI	TGATCA	1 cut(s)	571
BcoDI	GTCTC	1 cut(s)	455
BfaI	CTAG	2 cut(s)	99, 626
BfmI	CTRYAG	2 cut(s)	410, 906
BfuAI	ACCTGC	1 cut(s)	899
BfuI	GTATCC	1 cut(s)	199
BglI	GCCNNNNNGGC	2 cut(s)	364, 451
BglII	AGATCT	1 cut(s)	961
BisI	GCNGC	2 cut(s)	504, 906
BlsI	GCNGC	2 cut(s)	505, 907
Bme1390I	CCNGG	1 cut(s)	234
BmeT110I	CYCGRG	1 cut(s)	213
BmgT120I	GGNCC	2 cut(s)	552, 952
BmiI	GGNNCC	3 cut(s)	553, 747, 895
BmrFI	CCNGG	1 cut(s)	234
BmrI	ACTGGG	1 cut(s)	62
BmuI	ACTGGG	1 cut(s)	62
BpiI	GAAGAC	3 cut(s)	167, 298, 836
Bpu10I	CCTNAGC	1 cut(s)	126
BsaBI	GATNNNNATC	1 cut(s)	744
BsaJI	CCNNGG	4 cut(s)	449, 821, 948, 1110
BsaWI	WCCGGW	2 cut(s)	997, 1072
Bsc4I	CCNNNNNNNGG	3 cut(s)	769, 1038, 1079
Bse118I	RCCGGY	1 cut(s)	329
Bse1I	ACTGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	942
Bse8I	GATNNNNATC	1 cut(s)	744
BseAI	TCCGGA	1 cut(s)	997
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	4 cut(s)	449, 821, 948, 1110
BseGI	GGATG	1 cut(s)	831
BseJI	GATNNNNATC	1 cut(s)	744
BseLI	CCNNNNNNNGG	3 cut(s)	769, 1038, 1079
BseMI	GCAATG	1 cut(s)	942
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	490, 892
BseYI	CCCAGC	1 cut(s)	405
BsgI	GTGCAG	2 cut(s)	489, 978
Bsh1236I	CGCG	1 cut(s)	224
Bsh1285I	CGRYCG	1 cut(s)	601
BshFI	GGCC	3 cut(s)	554, 762, 954
BshNI	GGYRCC	1 cut(s)	893
BsiEI	CGRYCG	1 cut(s)	601
BsiHKCI	CYCGRG	1 cut(s)	213
BsiSI	CCGG	3 cut(s)	330, 998, 1073
BslI	CCNNNNNNNGG	3 cut(s)	769, 1038, 1079
BsmAI	GTCTC	1 cut(s)	455
BsmI	GAATGC	1 cut(s)	884
BsnI	GGCC	3 cut(s)	554, 762, 954
BsoBI	CYCGRG	1 cut(s)	213
Bsp13I	TCCGGA	1 cut(s)	997
Bsp143I	GATC	8 cut(s)	64, 107, 571, 598, 745, 795, 961, 1069
BspACI	CCGC	5 cut(s)	92, 224, 300, 348, 773
BspANI	GGCC	3 cut(s)	554, 762, 954
BspCNI	CTCAG	1 cut(s)	139
BspEI	TCCGGA	1 cut(s)	997
BspFNI	CGCG	1 cut(s)	224
BspLI	GGNNCC	3 cut(s)	553, 747, 895
BspMAI	CTGCAG	1 cut(s)	910
BspMI	ACCTGC	1 cut(s)	899
BspPI	GGATC	4 cut(s)	740, 753, 803, 1064
BspT107I	GGYRCC	1 cut(s)	893
BsrDI	GCAATG	1 cut(s)	942
BsrFI	RCCGGY	1 cut(s)	329
BsrI	ACTGG	1 cut(s)	57
BssAI	RCCGGY	1 cut(s)	329
BssECI	CCNNGG	4 cut(s)	449, 821, 948, 1110
BssMI	GATC	8 cut(s)	64, 107, 571, 598, 745, 795, 961, 1069
BssT1I	CCWWGG	2 cut(s)	449, 821
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	3 cut(s)	414, 617, 1114
BstC8I	GCNNGC	4 cut(s)	327, 331, 369, 526
BstDEI	CTNAG	2 cut(s)	126, 294
BstDSI	CCRYGG	1 cut(s)	1110
BstF5I	GGATG	1 cut(s)	831
BstFNI	CGCG	1 cut(s)	224
BstHHI	GCGC	1 cut(s)	871
BstKTI	GATC	8 cut(s)	67, 110, 574, 601, 748, 798, 964, 1072
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	8 cut(s)	64, 107, 571, 598, 745, 795, 961, 1069
BstMCI	CGRYCG	1 cut(s)	601
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 364, 451, 512, 521, 902
BstNI	CCWGG	1 cut(s)	234
BstNSI	RCATGY	2 cut(s)	137, 329
BstSCI	CCNGG	1 cut(s)	232
BstSFI	CTRYAG	2 cut(s)	410, 906
BstUI	CGCG	1 cut(s)	224
BstV1I	GCAGC	2 cut(s)	490, 892
BstV2I	GAAGAC	3 cut(s)	167, 298, 836
BstX2I	RGATCY	3 cut(s)	745, 795, 961
BstXI	CCANNNNNNTGG	2 cut(s)	362, 617
BstYI	RGATCY	3 cut(s)	745, 795, 961
BsuI	GTATCC	1 cut(s)	199
BsuRI	GGCC	3 cut(s)	554, 762, 954
BtgI	CCRYGG	1 cut(s)	1110
BtgZI	GCGATG	1 cut(s)	886
BtsCI	GGATG	1 cut(s)	831
BtsIMutI	CAGTG	3 cut(s)	384, 395, 1086
BveI	ACCTGC	1 cut(s)	899
Cac8I	GCNNGC	4 cut(s)	327, 331, 369, 526
CfoI	GCGC	1 cut(s)	871
Cfr10I	RCCGGY	1 cut(s)	329
Cfr13I	GGNCC	2 cut(s)	552, 952
CseI	GACGC	1 cut(s)	290
Csp6I	GTAC	4 cut(s)	112, 220, 802, 1042
CviAII	CATG	5 cut(s)	134, 264, 326, 769, 809
CviQI	GTAC	4 cut(s)	112, 220, 802, 1042
DdeI	CTNAG	2 cut(s)	126, 294
DpnI	GATC	8 cut(s)	66, 109, 573, 600, 747, 797, 963, 1071
DpnII	GATC	8 cut(s)	64, 107, 571, 598, 745, 795, 961, 1069
EciI	GGCGGA	1 cut(s)	788
Eco130I	CCWWGG	2 cut(s)	449, 821
Eco147I	AGGCCT	1 cut(s)	762
Eco57I	CTGAAG	1 cut(s)	207
Eco88I	CYCGRG	1 cut(s)	213
EcoRI	GAATTC	1 cut(s)	437
EcoRII	CCWGG	1 cut(s)	232
EcoT14I	CCWWGG	2 cut(s)	449, 821
ErhI	CCWWGG	2 cut(s)	449, 821
FaeI	CATG	5 cut(s)	137, 267, 329, 772, 812
FalI	AAGNNNNNCTT	6 cut(s)	159, 191, 684, 716, 881, 913
FatI	CATG	5 cut(s)	133, 263, 325, 768, 808
FbaI	TGATCA	1 cut(s)	571
Fnu4HI	GCNGC	2 cut(s)	504, 906
FokI	GGATG	1 cut(s)	838
Fsp4HI	GCNGC	2 cut(s)	504, 906
FspBI	CTAG	2 cut(s)	99, 626
GlaI	GCGC	1 cut(s)	870
GluI	GCNGC	2 cut(s)	504, 906
GsaI	CCCAGC	1 cut(s)	409
HaeIII	GGCC	3 cut(s)	554, 762, 954
HapII	CCGG	3 cut(s)	330, 998, 1073
HgaI	GACGC	1 cut(s)	290
HhaI	GCGC	1 cut(s)	871
Hin1II	CATG	5 cut(s)	137, 267, 329, 772, 812
Hin6I	GCGC	1 cut(s)	869
HinP1I	GCGC	1 cut(s)	869
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	4 cut(s)	631, 731, 740, 776
HpaII	CCGG	3 cut(s)	330, 998, 1073
Hpy166II	GTNNAC	3 cut(s)	280, 289, 595
Hpy188I	TCNGA	5 cut(s)	205, 318, 745, 859, 1069
Hpy188III	TCNNGA	5 cut(s)	626, 650, 998, 1049, 1103
Hpy8I	GTNNAC	3 cut(s)	280, 289, 595
HpyAV	CCTTC	2 cut(s)	505, 907
HpyCH4III	ACNGT	3 cut(s)	414, 617, 1114
HpyCH4IV	ACGT	3 cut(s)	161, 429, 1055
HpyCH4V	TGCA	4 cut(s)	384, 506, 908, 959
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 364, 451, 512, 521, 902
HpyF3I	CTNAG	2 cut(s)	126, 294
HpySE526I	ACGT	3 cut(s)	161, 429, 1055
Hsp92II	CATG	5 cut(s)	137, 267, 329, 772, 812
HspAI	GCGC	1 cut(s)	869
Kpn2I	TCCGGA	1 cut(s)	997
KroI	GCCGGC	1 cut(s)	329
KroNI	GCCGGC	1 cut(s)	331
Ksp22I	TGATCA	1 cut(s)	571
Kzo9I	GATC	8 cut(s)	64, 107, 571, 598, 745, 795, 961, 1069
LmnI	GCTCC	5 cut(s)	250, 376, 683, 860, 1033
Lsp1109I	GCAGC	2 cut(s)	490, 892
MaeI	CTAG	2 cut(s)	99, 626
MaeII	ACGT	3 cut(s)	161, 429, 1055
MaeIII	GTNAC	2 cut(s)	914, 1082
MalI	GATC	8 cut(s)	66, 109, 573, 600, 747, 797, 963, 1071
MboI	GATC	8 cut(s)	64, 107, 571, 598, 745, 795, 961, 1069
MboII	GAAGA	5 cut(s)	167, 298, 301, 841, 938
MflI	RGATCY	3 cut(s)	745, 795, 961
MluCI	AATT	6 cut(s)	27, 437, 471, 480, 543, 1077
MlyI	GAGTC	1 cut(s)	740
MmeI	TCCRAC	1 cut(s)	676
MnlI	CCTC	6 cut(s)	30, 42, 135, 209, 456, 943
MroI	TCCGGA	1 cut(s)	997
MroNI	GCCGGC	1 cut(s)	329
MseI	TTAA	2 cut(s)	582, 1023
MslI	CAYNNNNRTG	1 cut(s)	615
MspA1I	CMGCKG	1 cut(s)	94
MspI	CCGG	3 cut(s)	330, 998, 1073
MspR9I	CCNGG	1 cut(s)	234
Mva1269I	GAATGC	1 cut(s)	884
MvaI	CCWGG	1 cut(s)	234
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	6 cut(s)	14, 364, 451, 512, 521, 902
NaeI	GCCGGC	1 cut(s)	331
NdeII	GATC	8 cut(s)	64, 107, 571, 598, 745, 795, 961, 1069
NgoMIV	GCCGGC	1 cut(s)	329
NlaIII	CATG	5 cut(s)	137, 267, 329, 772, 812
NlaIV	GGNNCC	3 cut(s)	553, 747, 895
NmeAIII	GCCGAG	1 cut(s)	973
NspI	RCATGY	2 cut(s)	137, 329
PaeI	GCATGC	1 cut(s)	329
PaeR7I	CTCGAG	1 cut(s)	213
PaqCI	CACCTGC	1 cut(s)	899
PceI	AGGCCT	1 cut(s)	762
PcsI	WCGNNNNNNNCGW	1 cut(s)	158
PctI	GAATGC	1 cut(s)	884
PdiI	GCCGGC	1 cut(s)	331
PfeI	GAWTC	3 cut(s)	631, 740, 776
PkrI	GCNGC	2 cut(s)	505, 907
Ple19I	CGATCG	1 cut(s)	601
PleI	GAGTC	1 cut(s)	739
PpsI	GAGTC	1 cut(s)	739
Psp6I	CCWGG	1 cut(s)	232
PspFI	CCCAGC	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	3 cut(s)	553, 747, 895
PspPI	GGNCC	2 cut(s)	552, 952
PspXI	VCTCGAGB	1 cut(s)	213
PstI	CTGCAG	1 cut(s)	910
PsuI	RGATCY	3 cut(s)	745, 795, 961
PvuI	CGATCG	1 cut(s)	601
RsaI	GTAC	4 cut(s)	113, 221, 803, 1043
RsaNI	GTAC	4 cut(s)	112, 220, 802, 1042
RseI	CAYNNNNRTG	1 cut(s)	615
SaqAI	TTAA	2 cut(s)	582, 1023
SatI	GCNGC	2 cut(s)	504, 906
Sau3AI	GATC	8 cut(s)	64, 107, 571, 598, 745, 795, 961, 1069
Sau96I	GGNCC	2 cut(s)	552, 952
SchI	GAGTC	1 cut(s)	740
ScrFI	CCNGG	1 cut(s)	234
SfcI	CTRYAG	2 cut(s)	410, 906
Sfr274I	CTCGAG	1 cut(s)	213
SlaI	CTCGAG	1 cut(s)	213
SmiMI	CAYNNNNRTG	1 cut(s)	615
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
SphI	GCATGC	1 cut(s)	329
Sse9I	AATT	6 cut(s)	27, 437, 471, 480, 543, 1077
SseBI	AGGCCT	1 cut(s)	762
SsiI	CCGC	5 cut(s)	92, 224, 300, 348, 773
SspMI	CTAG	2 cut(s)	99, 626
StuI	AGGCCT	1 cut(s)	762
StyD4I	CCNGG	1 cut(s)	232
StyI	CCWWGG	2 cut(s)	449, 821
TaaI	ACNGT	3 cut(s)	414, 617, 1114
TaiI	ACGT	3 cut(s)	164, 432, 1058
TaqI	TCGA	9 cut(s)	63, 195, 214, 258, 519, 601, 640, 703, 1048
TasI	AATT	6 cut(s)	27, 437, 471, 480, 543, 1077
TatI	WGTACW	1 cut(s)	801
TfiI	GAWTC	3 cut(s)	631, 740, 776
Tru1I	TTAA	2 cut(s)	582, 1023
Tru9I	TTAA	2 cut(s)	582, 1023
TscAI	CASTG	3 cut(s)	391, 402, 1093
TseI	GCWGC	2 cut(s)	503, 905
TspDTI	ATGAA	3 cut(s)	483, 842, 889
TspGWI	ACGGA	1 cut(s)	523
TspRI	CASTG	3 cut(s)	391, 402, 1093
XapI	RAATTY	3 cut(s)	437, 471, 543
XbaI	TCTAGA	1 cut(s)	625
XceI	RCATGY	2 cut(s)	137, 329
XhoI	CTCGAG	1 cut(s)	213
XspI	CTAG	2 cut(s)	99, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.