Rmu_co8113900.1_g000001

12-oxophytodienoate reductase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8113900.1
Physical Location & Seq
Forward (+)
1 .. 187
187 bp
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UTR
Exon/CDS
Intron
Rmu_co8113900.1_g000001.1.cds

Sequence Viewer

Length: 187 bp
gaacaatgctgtggctgagggccgtgcagatcttatcgcttttggtcgttggttcttggctaatccagatttgccaaagaggtttgagcttaatgcacctctaaataagtacaacagagatacattctacatatctgatccggttcttggttacactgattatccatttcttgacagcgctgcttga

Protein Analysis

61

Amino Acids

6.93

Weight (kDa)

4.66

Isoelectric Point (pI)

45.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 132
AfaI GTAC 1 cut(s) 111
AfeI AGCGCT 1 cut(s) 179
AfiI CCNNNNNNNGG 1 cut(s) 147
AluBI AGCT 1 cut(s) 89
AluI AGCT 1 cut(s) 89
AlwI GGATC 1 cut(s) 132
Aor51HI AGCGCT 1 cut(s) 179
AoxI GGCC 1 cut(s) 20
ApeKI GCWGC 1 cut(s) 180
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 20
BbvCI CCTCAGC 1 cut(s) 16
BbvI GCAGC 1 cut(s) 167
BceAI ACGGC 1 cut(s) 7
BfoI RGCGCY 1 cut(s) 181
BglII AGATCT 1 cut(s) 29
BisI GCNGC 1 cut(s) 181
BlsI GCNGC 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 20
Bpu10I CCTNAGC 1 cut(s) 16
BsaWI WCCGGW 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 147
BseLI CCNNNNNNNGG 1 cut(s) 147
BseMII CTCAG 1 cut(s) 7
BseXI GCAGC 1 cut(s) 167
BsgI GTGCAG 1 cut(s) 46
BshFI GGCC 1 cut(s) 22
BsiSI CCGG 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 147
BsnI GGCC 1 cut(s) 22
Bsp143I GATC 2 cut(s) 29, 137
BspANI GGCC 1 cut(s) 22
BspCNI CTCAG 1 cut(s) 8
BspPI GGATC 1 cut(s) 132
BssMI GATC 2 cut(s) 29, 137
BstDEI CTNAG 1 cut(s) 16
BstH2I RGCGCY 1 cut(s) 181
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 2 cut(s) 32, 140
BstMBI GATC 2 cut(s) 29, 137
BstV1I GCAGC 1 cut(s) 167
BstX2I RGATCY 1 cut(s) 29
BstYI RGATCY 1 cut(s) 29
BsuRI GGCC 1 cut(s) 22
BtsIMutI CAGTG 1 cut(s) 154
CfoI GCGC 1 cut(s) 180
Cfr13I GGNCC 1 cut(s) 20
Csp6I GTAC 1 cut(s) 110
CviJI RGCY 4 cut(s) 15, 22, 60, 89
CviKI_1 RGCY 4 cut(s) 15, 22, 60, 89
CviQI GTAC 1 cut(s) 110
DdeI CTNAG 1 cut(s) 16
DpnI GATC 2 cut(s) 31, 139
DpnII GATC 2 cut(s) 29, 137
Eco47III AGCGCT 1 cut(s) 179
FaiI YATR 1 cut(s) 132
Fnu4HI GCNGC 1 cut(s) 181
Fsp4HI GCNGC 1 cut(s) 181
GlaI GCGC 1 cut(s) 179
GluI GCNGC 1 cut(s) 181
HaeII RGCGCY 1 cut(s) 181
HaeIII GGCC 1 cut(s) 22
HapII CCGG 1 cut(s) 141
HhaI GCGC 1 cut(s) 180
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HpaII CCGG 1 cut(s) 141
Hpy188I TCNGA 1 cut(s) 137
Hpy188III TCNNGA 2 cut(s) 66, 171
HpyCH4V TGCA 2 cut(s) 27, 96
HpyF3I CTNAG 1 cut(s) 16
HspAI GCGC 1 cut(s) 178
Kzo9I GATC 2 cut(s) 29, 137
LpnPI CCDG 2 cut(s) 79, 154
Lsp1109I GCAGC 1 cut(s) 167
MaeIII GTNAC 1 cut(s) 150
MalI GATC 2 cut(s) 31, 139
MboI GATC 2 cut(s) 29, 137
MflI RGATCY 1 cut(s) 29
MnlI CCTC 3 cut(s) 11, 73, 109
MseI TTAA 1 cut(s) 91
MspI CCGG 1 cut(s) 141
NdeII GATC 2 cut(s) 29, 137
PkrI GCNGC 1 cut(s) 182
PspPI GGNCC 1 cut(s) 20
PsuI RGATCY 1 cut(s) 29
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
SaqAI TTAA 1 cut(s) 91
SatI GCNGC 1 cut(s) 181
Sau3AI GATC 2 cut(s) 29, 137
Sau96I GGNCC 1 cut(s) 20
SetI ASST 3 cut(s) 84, 91, 101
SgeI CNNG 6 cut(s) 36, 68, 78, 153, 159, 183
TatI WGTACW 1 cut(s) 109
Tru1I TTAA 1 cut(s) 91
Tru9I TTAA 1 cut(s) 91
TscAI CASTG 1 cut(s) 161
TseI GCWGC 1 cut(s) 180
TspRI CASTG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.