Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001555

Physical Location & Seq

Genomic Coordinates Reverse (-)

44862457 .. 44865088

Gene Structure 2632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G548600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGTCTGCTCAACCTCCCACAATTCCTCTCCTTACCCCTTACAAAATGGGAAAGTTCAACCTTTCTCATAGAATTGTTTTAGCACCATTGACTAGACAGAGATCATACAACAATATTCCACAGCCGCATGCCATCTTATATTACTCTCAGAGAACATCTCAAGGGGGTCTTCTCATAGCTGAAGCCAGTGGAGTTTCTGACACAGCTCAAGGGTATCCAGATATGCCTGGTTTATGGACAAGGGAGCAAGTTGAAGCGTGGAAACCGATTGTTGATGCTGTTCATGCTAAAGGCGGTGTCTTCTTCTGTCAGATTTGGCATGCCGGCAGGGTTTCAAACAGTGGTTTTCAGCCAAATGGGCAAGCTCCAATCTCTTGTACCGACAAGCCACTACCCCCCCAACTACTAACTAATGGCGTTGACATTGCTCAATACACACCTCCAAGGAGATTAAAGACAGATGAAATTCCGCAAATTGTCAATGATTTTAGACTTGCTGCAAGGAATGCTATCGAAGCTGGCTTTGATGGGGTTGAAATTCATGGGGCGCATGGCTACCTTATTGATCAGTTTATGAAAGACCAAGTGAATGATCGAACAGATGAATACGGTGGATCGCTGGAGAACCGTTGCCGGTTCGCTTTGGAAATTGTTGAAGCTGTTGTTAATGAGATAGGAGCAGAAAAAGTTGGAATTAGATTATCTCCATTTGCGGACTATATGGAATCAGCAGATTCAGATCCGAAAGCATTAGGCCTTTATATGTCCAAATCCTTGAACAAATATGGGATCCTGTACTGCCATATGGTTGAGCCAAGAATGAAGACAGCTGGAGACAATAGTGAAACCCCTGACAGTCTTCTGCCCATGAGAGAAGCTTTCAAAGGCACCTTCATTGCGGCTGGTGGTTTTGACAGGGAAGATGGGAACAATGCTGTAGCTGAGGGTCGTGCAGATCTTGTTGCTTATGGCCGGTTCTTCTTGGCTAATCCAGATTTGCCAAAAAGATTTGAGCTTAATGCTCCTCTAAATAAGTACAACAGAGAGACGTTCTACACATCTGATCCGGTTATTGGCTACACTGATTATCCATTTCTTGAAACCACAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

371

Amino Acids

41.02

Weight (kDa)

5.47

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17990 AT1G17990 AT1G18020
fragaria_vesca	FvH4_5g32750
malus_domestica	MD08G1216100.v1.1 MD08G1216200.v1.1 MD15G1401200.v1.1 MD15G1401300.v1.1 MD15G1401800.v1.1 MD15G1402400.v1.1 MD15G1402700.v1.1
prunus_persica	Prupe.1G465800_v2.0.a1 Prupe.1G548300_v2.0.a1 Prupe.1G548400_v2.0.a1 Prupe.1G548600_v2.0.a1 Prupe.1G548700_v2.0.a1 Prupe.1G548800_v2.0.a1 Prupe.1G548900_v2.0.a1 Prupe.1G549000_v2.0.a1 Prupe.7G200600_v2.0.a1
pyrus_communis	pycom08g18710 pycom08g18720 pycom15g35950 pycom15g35960 pycom15g35970 pycom15g36010 pycom15g36020
rosa_chinensis	RchiOBHm_Chr2g0094571 RchiOBHm_Chr2g0094601 RchiOBHm_Chr2g0167371 RchiOBHm_Chr7g0230371 RchiOBHm_Chr7g0230381 RchiOBHm_Chr7g0230411 RchiOBHm_Chr7g0230421
rosa_laevigata	RLG00000001497 RLG00000009949 RLG00000016505 RLG00000021711
rosa_multiflora	Rmu_co8113900.1_g000001 Rmu_sc0001840.1_g000007 Rmu_sc0002541.1_g000033 Rmu_sc0007103.1_g000019
rosa_roxburghii	Rroxscaffold_2G00083570
rosa_rugosa	Rorug02G0045500 Rorug02G0529800 Rorug07G0260300
rosa_samantha	Rh2BG093600 Rh2BG608200
rosa_wichuraiana	Rw2G049670 Rw7G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	887
AciI	CCGC	5 cut(s)	125, 294, 470, 713, 899
AclWI	GGATC	5 cut(s)	622, 734, 784, 797, 1058
AcoI	YGGCCR	1 cut(s)	970
AcsI	RAATTY	2 cut(s)	465, 537
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	3 cut(s)	379, 797, 1037
AfiI	CCNNNNNNNGG	1 cut(s)	1073
AgsI	TTSAA	8 cut(s)	58, 254, 336, 536, 656, 778, 883, 1100
AjnI	CCWGG	1 cut(s)	226
Alw26I	GTCTC	2 cut(s)	828, 1040
AlwI	GGATC	5 cut(s)	622, 734, 784, 797, 1058
AoxI	GGCC	2 cut(s)	754, 970
ApeKI	GCWGC	1 cut(s)	497
ApoI	RAATTY	2 cut(s)	465, 537
AspLEI	GCGC	1 cut(s)	550
BamHI	GGATCC	1 cut(s)	789
BanI	GGYRCC	1 cut(s)	887
BbsI	GAAGAC	4 cut(s)	161, 292, 830, 851
BbvCI	CCTCAGC	1 cut(s)	942
BbvI	GCAGC	1 cut(s)	484
BccI	CCATC	3 cut(s)	140, 521, 917
BciT130I	CCWGG	1 cut(s)	228
BciVI	GTATCC	1 cut(s)	225
BclI	TGATCA	1 cut(s)	565
BcoDI	GTCTC	2 cut(s)	828, 1040
BfaI	CTAG	1 cut(s)	93
BfmI	CTRYAG	1 cut(s)	936
BfuI	GTATCC	1 cut(s)	225
BglI	GCCNNNNNGGC	1 cut(s)	358
BglII	AGATCT	1 cut(s)	955
BisI	GCNGC	3 cut(s)	125, 498, 900
BlsI	GCNGC	3 cut(s)	126, 499, 901
Bme1390I	CCNGG	1 cut(s)	228
BmiI	GGNNCC	2 cut(s)	791, 889
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	265
BpiI	GAAGAC	4 cut(s)	161, 292, 830, 851
BplI	GAGNNNNNCTC	2 cut(s)	142, 174
BpmI	CTGGAG	2 cut(s)	641, 852
Bpu10I	CCTNAGC	1 cut(s)	942
BpuEI	CTTGAG	2 cut(s)	144, 192
BsaBI	GATNNNNATC	1 cut(s)	738
BsaJI	CCNNGG	1 cut(s)	443
BsaWI	WCCGGW	1 cut(s)	1066
Bsc4I	CCNNNNNNNGG	1 cut(s)	1073
Bse118I	RCCGGY	3 cut(s)	323, 633, 972
Bse1I	ACTGG	1 cut(s)	186
Bse3DI	GCAATG	2 cut(s)	423, 894
Bse8I	GATNNNNATC	1 cut(s)	738
BseBI	CCWGG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	443
BseJI	GATNNNNATC	1 cut(s)	738
BseLI	CCNNNNNNNGG	1 cut(s)	1073
BseMI	GCAATG	2 cut(s)	423, 894
BseMII	CTCAG	2 cut(s)	161, 933
BseNI	ACTGG	1 cut(s)	186
BseRI	GAGGAG	1 cut(s)	1014
BseXI	GCAGC	1 cut(s)	484
BsgI	GTGCAG	1 cut(s)	972
BshFI	GGCC	2 cut(s)	756, 972
BshNI	GGYRCC	1 cut(s)	887
BsiSI	CCGG	4 cut(s)	324, 634, 973, 1067
BslI	CCNNNNNNNGG	1 cut(s)	1073
BsmAI	GTCTC	2 cut(s)	828, 1040
BsmBI	CGTCTC	1 cut(s)	1040
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	2 cut(s)	756, 972
Bsp143I	GATC	8 cut(s)	101, 565, 592, 614, 739, 789, 955, 1063
BspACI	CCGC	5 cut(s)	125, 294, 470, 713, 899
BspANI	GGCC	2 cut(s)	756, 972
BspCNI	CTCAG	2 cut(s)	160, 934
BspLI	GGNNCC	2 cut(s)	791, 889
BspPI	GGATC	5 cut(s)	622, 734, 784, 797, 1058
BspT107I	GGYRCC	1 cut(s)	887
BsrDI	GCAATG	2 cut(s)	423, 894
BsrFI	RCCGGY	3 cut(s)	323, 633, 972
BsrI	ACTGG	1 cut(s)	186
BssAI	RCCGGY	3 cut(s)	323, 633, 972
BssECI	CCNNGG	1 cut(s)	443
BssMI	GATC	8 cut(s)	101, 565, 592, 614, 739, 789, 955, 1063
BssT1I	CCWWGG	1 cut(s)	443
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	4 cut(s)	341, 611, 629, 857
BstAPI	GCANNNNNTGC	1 cut(s)	506
BstC8I	GCNNGC	5 cut(s)	129, 321, 325, 363, 520
BstDEI	CTNAG	2 cut(s)	147, 942
BstHHI	GCGC	1 cut(s)	550
BstKTI	GATC	8 cut(s)	104, 568, 595, 617, 742, 792, 958, 1066
BstMAI	GTCTC	2 cut(s)	828, 1040
BstMBI	GATC	8 cut(s)	101, 565, 592, 614, 739, 789, 955, 1063
BstMWI	GCNNNNNNNGC	4 cut(s)	284, 358, 506, 515
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	2 cut(s)	131, 323
BstSCI	CCNGG	1 cut(s)	226
BstSFI	CTRYAG	1 cut(s)	936
BstV1I	GCAGC	1 cut(s)	484
BstV2I	GAAGAC	4 cut(s)	161, 292, 830, 851
BstX2I	RGATCY	3 cut(s)	739, 789, 955
BstYI	RGATCY	3 cut(s)	739, 789, 955
BsuI	GTATCC	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	756, 972
BtsIMutI	CAGTG	3 cut(s)	193, 346, 1080
Cac8I	GCNNGC	5 cut(s)	129, 321, 325, 363, 520
CfoI	GCGC	1 cut(s)	550
Cfr10I	RCCGGY	3 cut(s)	323, 633, 972
Csp6I	GTAC	3 cut(s)	378, 796, 1036
CviAII	CATG	6 cut(s)	128, 284, 320, 542, 551, 868
CviQI	GTAC	3 cut(s)	378, 796, 1036
DdeI	CTNAG	2 cut(s)	147, 942
DpnI	GATC	8 cut(s)	103, 567, 594, 616, 741, 791, 957, 1065
DpnII	GATC	8 cut(s)	101, 565, 592, 614, 739, 789, 955, 1063
EaeI	YGGCCR	1 cut(s)	970
Eco130I	CCWWGG	1 cut(s)	443
Eco147I	AGGCCT	1 cut(s)	756
Eco57I	CTGAAG	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	443
ErhI	CCWWGG	1 cut(s)	443
Esp3I	CGTCTC	1 cut(s)	1040
FaeI	CATG	6 cut(s)	131, 287, 323, 545, 554, 871
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FatI	CATG	6 cut(s)	127, 283, 319, 541, 550, 867
FauNDI	CATATG	1 cut(s)	804
FbaI	TGATCA	1 cut(s)	565
Fnu4HI	GCNGC	3 cut(s)	125, 498, 900
Fsp4HI	GCNGC	3 cut(s)	125, 498, 900
FspBI	CTAG	1 cut(s)	93
GlaI	GCGC	1 cut(s)	549
GluI	GCNGC	3 cut(s)	125, 498, 900
GsuI	CTGGAG	2 cut(s)	641, 852
HaeIII	GGCC	2 cut(s)	756, 972
HapII	CCGG	4 cut(s)	324, 634, 973, 1067
HhaI	GCGC	1 cut(s)	550
Hin1II	CATG	6 cut(s)	131, 287, 323, 545, 554, 871
Hin6I	GCGC	1 cut(s)	548
HinP1I	GCGC	1 cut(s)	548
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HindIII	AAGCTT	1 cut(s)	876
HinfI	GANTC	2 cut(s)	725, 734
HpaII	CCGG	4 cut(s)	324, 634, 973, 1067
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	6 cut(s)	150, 199, 312, 739, 744, 1063
Hpy188III	TCNNGA	3 cut(s)	218, 992, 1097
Hpy8I	GTNNAC	1 cut(s)	421
HpyAV	CCTTC	1 cut(s)	901
HpyCH4III	ACNGT	4 cut(s)	341, 611, 629, 857
HpyCH4IV	ACGT	1 cut(s)	1049
HpyCH4V	TGCA	2 cut(s)	500, 953
HpyF10VI	GCNNNNNNNGC	4 cut(s)	284, 358, 506, 515
HpyF3I	CTNAG	2 cut(s)	147, 942
HpySE526I	ACGT	1 cut(s)	1049
Hsp92II	CATG	6 cut(s)	131, 287, 323, 545, 554, 871
HspAI	GCGC	1 cut(s)	548
KroI	GCCGGC	1 cut(s)	323
KroNI	GCCGGC	1 cut(s)	325
Ksp22I	TGATCA	1 cut(s)	565
Kzo9I	GATC	8 cut(s)	101, 565, 592, 614, 739, 789, 955, 1063
LmnI	GCTCC	4 cut(s)	244, 370, 677, 1027
Lsp1109I	GCAGC	1 cut(s)	484
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	1 cut(s)	1049
MalI	GATC	8 cut(s)	103, 567, 594, 616, 741, 791, 957, 1065
MboI	GATC	8 cut(s)	101, 565, 592, 614, 739, 789, 955, 1063
MboII	GAAGA	7 cut(s)	161, 292, 295, 835, 851, 932, 970
MflI	RGATCY	3 cut(s)	739, 789, 955
MluCI	AATT	7 cut(s)	21, 72, 465, 474, 537, 648, 693
MmeI	TCCRAC	1 cut(s)	670
MnlI	CCTC	5 cut(s)	24, 36, 450, 937, 1035
MroNI	GCCGGC	1 cut(s)	323
MseI	TTAA	4 cut(s)	452, 666, 1017, 1111
MspA1I	CMGCKG	1 cut(s)	830
MspI	CCGG	4 cut(s)	324, 634, 973, 1067
MspR9I	CCNGG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	4 cut(s)	284, 358, 506, 515
NaeI	GCCGGC	1 cut(s)	325
NdeI	CATATG	1 cut(s)	804
NdeII	GATC	8 cut(s)	101, 565, 592, 614, 739, 789, 955, 1063
NgoMIV	GCCGGC	1 cut(s)	323
NlaIII	CATG	6 cut(s)	131, 287, 323, 545, 554, 871
NlaIV	GGNNCC	2 cut(s)	791, 889
NspI	RCATGY	2 cut(s)	131, 323
PaeI	GCATGC	2 cut(s)	131, 323
PceI	AGGCCT	1 cut(s)	756
PctI	GAATGC	1 cut(s)	511
PdiI	GCCGGC	1 cut(s)	325
PfeI	GAWTC	2 cut(s)	725, 734
PkrI	GCNGC	3 cut(s)	126, 499, 901
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	2 cut(s)	791, 889
PsuI	RGATCY	3 cut(s)	739, 789, 955
PvuII	CAGCTG	1 cut(s)	830
RsaI	GTAC	3 cut(s)	379, 797, 1037
RsaNI	GTAC	3 cut(s)	378, 796, 1036
SaqAI	TTAA	4 cut(s)	452, 666, 1017, 1111
SatI	GCNGC	3 cut(s)	125, 498, 900
Sau3AI	GATC	8 cut(s)	101, 565, 592, 614, 739, 789, 955, 1063
ScrFI	CCNGG	1 cut(s)	228
SfaNI	GCATC	1 cut(s)	265
SfcI	CTRYAG	1 cut(s)	936
SmlI	CTYRAG	2 cut(s)	159, 207
SmoI	CTYRAG	2 cut(s)	159, 207
SphI	GCATGC	2 cut(s)	131, 323
Sse9I	AATT	7 cut(s)	21, 72, 465, 474, 537, 648, 693
SseBI	AGGCCT	1 cut(s)	756
SsiI	CCGC	5 cut(s)	125, 294, 470, 713, 899
SspI	AATATT	1 cut(s)	115
SspMI	CTAG	1 cut(s)	93
StuI	AGGCCT	1 cut(s)	756
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	443
TaaI	ACNGT	4 cut(s)	341, 611, 629, 857
TaiI	ACGT	1 cut(s)	1052
TaqI	TCGA	2 cut(s)	513, 595
TasI	AATT	7 cut(s)	21, 72, 465, 474, 537, 648, 693
TatI	WGTACW	2 cut(s)	795, 1035
TauI	GCSGC	2 cut(s)	127, 902
TfiI	GAWTC	2 cut(s)	725, 734
Tru1I	TTAA	4 cut(s)	452, 666, 1017, 1111
Tru9I	TTAA	4 cut(s)	452, 666, 1017, 1111
TscAI	CASTG	3 cut(s)	193, 346, 1087
TseI	GCWGC	1 cut(s)	497
TspDTI	ATGAA	7 cut(s)	272, 477, 530, 590, 618, 836, 883
TspRI	CASTG	3 cut(s)	193, 346, 1087
XapI	RAATTY	2 cut(s)	465, 537
XceI	RCATGY	2 cut(s)	131, 323
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.