Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001555

Physical Location & Seq

Genomic Coordinates Forward (+)

7526345 .. 7527448

Gene Structure 1104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46957

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGAGTATGGAAACTGTGGCATTCGGTGATGCTGATTTACTGTCGTATGGTCGGGATTTTATCTCGAATCTTGACTTGGTGTTGAGGTTTAAGCTGAATGCTCCCTTGAACAAGTATATTAGGGAGACTTTCTACACTGATGTAGTTGGGTACACAGACTACCCTTTTCTGAACAGAGAAAATGTGAAAAAGGATGAGCACCCTTTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009694 GO:0009695 GO:0009791 GO:0009908 GO:0009987 GO:0010035 GO:0010193 GO:0010817 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0019752 GO:0022414 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042579 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046677 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0090567 GO:0099402 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

70

Amino Acids

8.19

Weight (kDa)

4.87

Isoelectric Point (pI)

22.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17990 AT1G17990 AT1G18020
fragaria_vesca	FvH4_5g32750
malus_domestica	MD08G1216100.v1.1 MD08G1216200.v1.1 MD15G1401200.v1.1 MD15G1401300.v1.1 MD15G1401800.v1.1 MD15G1402400.v1.1 MD15G1402700.v1.1
prunus_persica	Prupe.1G465800_v2.0.a1 Prupe.1G548300_v2.0.a1 Prupe.1G548400_v2.0.a1 Prupe.1G548600_v2.0.a1 Prupe.1G548700_v2.0.a1 Prupe.1G548800_v2.0.a1 Prupe.1G548900_v2.0.a1 Prupe.1G549000_v2.0.a1 Prupe.7G200600_v2.0.a1
pyrus_communis	pycom08g18710 pycom08g18720 pycom15g35950 pycom15g35960 pycom15g35970 pycom15g36010 pycom15g36020
rosa_chinensis	RchiOBHm_Chr2g0094571 RchiOBHm_Chr2g0094601 RchiOBHm_Chr2g0167371 RchiOBHm_Chr7g0230371 RchiOBHm_Chr7g0230381 RchiOBHm_Chr7g0230411 RchiOBHm_Chr7g0230421
rosa_laevigata	RLG00000001497 RLG00000009949 RLG00000016505 RLG00000021711
rosa_multiflora	Rmu_co8113900.1_g000001 Rmu_sc0001840.1_g000007 Rmu_sc0002541.1_g000033 Rmu_sc0007103.1_g000019
rosa_roxburghii	Rroxscaffold_2G00083570
rosa_rugosa	Rorug02G0045500 Rorug02G0529800 Rorug07G0260300
rosa_samantha	Rh2BG093600 Rh2BG608200
rosa_wichuraiana	Rw2G049670 Rw7G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	152
AgsI	TTSAA	1 cut(s)	109
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	201
BcoDI	GTCTC	1 cut(s)	119
BmsI	GCATC	1 cut(s)	19
BseGI	GGATG	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	201
BsmAI	GTCTC	1 cut(s)	119
BsmI	GAATGC	2 cut(s)	20, 103
Bsp1286I	GDGCHC	1 cut(s)	201
Bst4CI	ACNGT	2 cut(s)	16, 42
BstF5I	GGATG	1 cut(s)	199
BstMAI	GTCTC	1 cut(s)	119
BtsCI	GGATG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	151
CviJI	RGCY	1 cut(s)	94
CviKI_1	RGCY	1 cut(s)	94
CviQI	GTAC	1 cut(s)	151
FaiI	YATR	3 cut(s)	8, 48, 117
FokI	GGATG	1 cut(s)	206
HinfI	GANTC	1 cut(s)	67
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	1 cut(s)	153
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	3 cut(s)	53, 64, 71
Hpy8I	GTNNAC	1 cut(s)	153
HpyCH4III	ACNGT	2 cut(s)	16, 42
LmnI	GCTCC	1 cut(s)	106
LweI	GCATC	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	201
MnlI	CCTC	1 cut(s)	78
MseI	TTAA	1 cut(s)	90
Mva1269I	GAATGC	2 cut(s)	20, 103
PctI	GAATGC	2 cut(s)	20, 103
PfeI	GAWTC	1 cut(s)	67
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	2 cut(s)	89, 96
SfaNI	GCATC	1 cut(s)	19
SgeI	CNNG	6 cut(s)	65, 76, 83, 88, 118, 124
TaaI	ACNGT	2 cut(s)	16, 42
TaqI	TCGA	1 cut(s)	65
TfiI	GAWTC	1 cut(s)	67
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	1 cut(s)	142
TspRI	CASTG	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.