Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001555

Physical Location & Seq

Genomic Coordinates Reverse (-)

27903355 .. 27904610

Gene Structure 1256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1216200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGATCGTGTTTGCTTTGCTAACAAGAATTGTTTTGGCACCATTGACCAGACAGAGATTATACAACAATGTTGCTCAACCACATGCTATCTTATATTACTCTCAGAGAACGTCGAACGGGAGTCTTCTGATAGCTGAAGCCACTGCAGTTTCCAGCACAGCTCTAGGGTACCCGAACACACCTGGTATATGGACAAGGGAGCAAGTTGAAGCATGGAGACCCATTGTTGACGCTGTTCATGCCAAAGGTGGCGTTTTCTTCTGCCAGATTTGGCATGCTGGGAAGGTTTCTAATACCGGTTATCAACCAAATCGGCAAGCTCCAATATCTTCTACTGATAGGCCGAGACGATTAAATGACATTGATGATGCCGAATTCACGCCTCCAAGACGATTAAGGACCGATGAACTTCCACACGTTGCCAATGATTTTAGACTTGCTGCAAAGAATTCTATTGACGCTGGTAATGTTTATCCTACATTGGCTAAAATCTTATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

167

Amino Acids

18.48

Weight (kDa)

9.51

Isoelectric Point (pI)

27.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	6 - 155	1e-27	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17990 AT1G17990 AT1G18020
fragaria_vesca	FvH4_5g32750
malus_domestica	MD08G1216100.v1.1 MD08G1216200.v1.1 MD15G1401200.v1.1 MD15G1401300.v1.1 MD15G1401800.v1.1 MD15G1402400.v1.1 MD15G1402700.v1.1
prunus_persica	Prupe.1G465800_v2.0.a1 Prupe.1G548300_v2.0.a1 Prupe.1G548400_v2.0.a1 Prupe.1G548600_v2.0.a1 Prupe.1G548700_v2.0.a1 Prupe.1G548800_v2.0.a1 Prupe.1G548900_v2.0.a1 Prupe.1G549000_v2.0.a1 Prupe.7G200600_v2.0.a1
pyrus_communis	pycom08g18710 pycom08g18720 pycom15g35950 pycom15g35960 pycom15g35970 pycom15g36010 pycom15g36020
rosa_chinensis	RchiOBHm_Chr2g0094571 RchiOBHm_Chr2g0094601 RchiOBHm_Chr2g0167371 RchiOBHm_Chr7g0230371 RchiOBHm_Chr7g0230381 RchiOBHm_Chr7g0230411 RchiOBHm_Chr7g0230421
rosa_laevigata	RLG00000001497 RLG00000009949 RLG00000016505 RLG00000021711
rosa_multiflora	Rmu_co8113900.1_g000001 Rmu_sc0001840.1_g000007 Rmu_sc0002541.1_g000033 Rmu_sc0007103.1_g000019
rosa_roxburghii	Rroxscaffold_2G00083570
rosa_rugosa	Rorug02G0045500 Rorug02G0529800 Rorug07G0260300
rosa_samantha	Rh2BG093600 Rh2BG608200
rosa_wichuraiana	Rw2G049670 Rw7G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	168
AccB1I	GGYRCC	2 cut(s)	37, 168
AcsI	RAATTY	2 cut(s)	374, 448
AcuI	CTGAAG	1 cut(s)	156
AfaI	GTAC	1 cut(s)	170
AflIII	ACRYGT	1 cut(s)	415
AgeI	ACCGGT	1 cut(s)	296
AgsI	TTSAA	1 cut(s)	209
AjnI	CCWGG	1 cut(s)	181
AluBI	AGCT	3 cut(s)	134, 161, 320
AluI	AGCT	3 cut(s)	134, 161, 320
Alw26I	GTCTC	2 cut(s)	211, 340
AoxI	GGCC	1 cut(s)	341
ApeKI	GCWGC	1 cut(s)	440
ApoI	RAATTY	2 cut(s)	374, 448
AsiGI	ACCGGT	1 cut(s)	296
Asp718I	GGTACC	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	399
AvaII	GGWCC	1 cut(s)	399
BanI	GGYRCC	2 cut(s)	37, 168
BbsI	GAAGAC	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	427
BciT130I	CCWGG	1 cut(s)	183
BcoDI	GTCTC	2 cut(s)	211, 340
BfaI	CTAG	1 cut(s)	164
BfmI	CTRYAG	1 cut(s)	144
BisI	GCNGC	1 cut(s)	441
BlsI	GCNGC	1 cut(s)	442
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	1 cut(s)	399
BmgT120I	GGNCC	1 cut(s)	399
BmiI	GGNNCC	2 cut(s)	39, 170
BmrFI	CCNGG	1 cut(s)	183
BmsI	GCATC	1 cut(s)	358
BpiI	GAAGAC	1 cut(s)	116
BsaI	GGTCTC	1 cut(s)	211
BsaWI	WCCGGW	1 cut(s)	296
Bse118I	RCCGGY	1 cut(s)	296
BseBI	CCWGG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	427
BseYI	CCCAGC	1 cut(s)	278
BshFI	GGCC	1 cut(s)	343
BshNI	GGYRCC	2 cut(s)	37, 168
BshTI	ACCGGT	1 cut(s)	296
BsiSI	CCGG	1 cut(s)	297
BsmAI	GTCTC	2 cut(s)	211, 340
BsmBI	CGTCTC	1 cut(s)	340
BsnI	GGCC	1 cut(s)	343
Bso31I	GGTCTC	1 cut(s)	211
Bsp143I	GATC	1 cut(s)	3
BspANI	GGCC	1 cut(s)	343
BspCNI	CTCAG	1 cut(s)	115
BspLI	GGNNCC	2 cut(s)	39, 170
BspMAI	CTGCAG	1 cut(s)	148
BspT107I	GGYRCC	2 cut(s)	37, 168
BspTNI	GGTCTC	1 cut(s)	211
BsrFI	RCCGGY	1 cut(s)	296
BssAI	RCCGGY	1 cut(s)	296
BssMI	GATC	1 cut(s)	3
Bst2UI	CCWGG	1 cut(s)	183
BstC8I	GCNNGC	2 cut(s)	276, 318
BstDEI	CTNAG	1 cut(s)	102
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	2 cut(s)	211, 340
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNI	CCWGG	1 cut(s)	183
BstNSI	RCATGY	2 cut(s)	86, 278
BstSCI	CCNGG	1 cut(s)	181
BstSFI	CTRYAG	1 cut(s)	144
BstV1I	GCAGC	1 cut(s)	427
BstV2I	GAAGAC	1 cut(s)	116
BsuRI	GGCC	1 cut(s)	343
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	2 cut(s)	276, 318
Cfr10I	RCCGGY	1 cut(s)	296
Cfr13I	GGNCC	1 cut(s)	399
CseI	GACGC	2 cut(s)	239, 467
CsiI	ACCWGGT	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	169
CspAI	ACCGGT	1 cut(s)	296
CviAII	CATG	4 cut(s)	83, 213, 239, 275
CviJI	RGCY	6 cut(s)	134, 140, 161, 320, 343, 485
CviKI_1	RGCY	6 cut(s)	134, 140, 161, 320, 343, 485
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eco31I	GGTCTC	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	399
Eco57I	CTGAAG	1 cut(s)	156
EcoRI	GAATTC	2 cut(s)	374, 448
EcoRII	CCWGG	1 cut(s)	181
Esp3I	CGTCTC	1 cut(s)	340
FaeI	CATG	4 cut(s)	86, 216, 242, 278
FaiI	YATR	9 cut(s)	61, 84, 94, 188, 190, 214, 240, 276, 496
FatI	CATG	4 cut(s)	82, 212, 238, 274
Fnu4HI	GCNGC	1 cut(s)	441
Fsp4HI	GCNGC	1 cut(s)	441
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	1 cut(s)	441
GsaI	CCCAGC	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	343
HapII	CCGG	1 cut(s)	297
HgaI	GACGC	2 cut(s)	239, 467
Hin1II	CATG	4 cut(s)	86, 216, 242, 278
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	1 cut(s)	121
HpaII	CCGG	1 cut(s)	297
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	2 cut(s)	105, 129
Hpy8I	GTNNAC	1 cut(s)	229
Hpy99I	CGWCG	1 cut(s)	115
HpyAV	CCTTC	1 cut(s)	277
HpyCH4IV	ACGT	2 cut(s)	110, 417
HpyCH4V	TGCA	2 cut(s)	146, 443
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	1 cut(s)	102
HpySE526I	ACGT	2 cut(s)	110, 417
Hsp92II	CATG	4 cut(s)	86, 216, 242, 278
KpnI	GGTACC	1 cut(s)	172
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	2 cut(s)	199, 325
LpnPI	CCDG	8 cut(s)	61, 166, 168, 195, 264, 278, 310, 447
Lsp1109I	GCAGC	1 cut(s)	427
LweI	GCATC	1 cut(s)	358
MabI	ACCWGGT	1 cut(s)	181
MaeI	CTAG	1 cut(s)	164
MaeII	ACGT	2 cut(s)	110, 417
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	3 cut(s)	116, 250, 321
MluCI	AATT	3 cut(s)	27, 374, 448
MlyI	GAGTC	1 cut(s)	130
MnlI	CCTC	1 cut(s)	393
MseI	TTAA	2 cut(s)	353, 395
MspI	CCGG	1 cut(s)	297
MspR9I	CCNGG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	1 cut(s)	239
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	4 cut(s)	86, 216, 242, 278
NlaIV	GGNNCC	2 cut(s)	39, 170
NmeAIII	GCCGAG	1 cut(s)	369
NspI	RCATGY	2 cut(s)	86, 278
PaeI	GCATGC	1 cut(s)	278
PinAI	ACCGGT	1 cut(s)	296
PkrI	GCNGC	1 cut(s)	442
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	181
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	181
PspN4I	GGNNCC	2 cut(s)	39, 170
PspPI	GGNCC	1 cut(s)	399
PstI	CTGCAG	1 cut(s)	148
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
SaqAI	TTAA	2 cut(s)	353, 395
SatI	GCNGC	1 cut(s)	441
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	399
SchI	GAGTC	1 cut(s)	130
ScrFI	CCNGG	1 cut(s)	183
SetI	ASST	8 cut(s)	113, 136, 163, 184, 250, 288, 322, 420
SexAI	ACCWGGT	1 cut(s)	181
SfaNI	GCATC	1 cut(s)	358
SfcI	CTRYAG	1 cut(s)	144
SinI	GGWCC	1 cut(s)	399
SphI	GCATGC	1 cut(s)	278
Sse9I	AATT	3 cut(s)	27, 374, 448
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	1 cut(s)	181
TaiI	ACGT	2 cut(s)	113, 420
TaqI	TCGA	1 cut(s)	113
TaqII	GACCGA	1 cut(s)	416
TasI	AATT	3 cut(s)	27, 374, 448
Tru1I	TTAA	2 cut(s)	353, 395
Tru9I	TTAA	2 cut(s)	353, 395
TscAI	CASTG	1 cut(s)	148
TseI	GCWGC	1 cut(s)	440
TspDTI	ATGAA	2 cut(s)	227, 420
TspRI	CASTG	1 cut(s)	148
VpaK11BI	GGWCC	1 cut(s)	399
XapI	RAATTY	2 cut(s)	374, 448
XceI	RCATGY	2 cut(s)	86, 278
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.