Rorug07G0260300

12-oxophytodienoate reductase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
24450293 .. 24450807
515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0260300.1

Sequence Viewer

Length: 276 bp
ATGAGGGCCTCAGCCACAGCGTTATTACTTGCCTTGTTTATCTTGATTTTTGTTGCATCCTCCTCCTCTATTCCGATCCATTCGTCGTCAGCAGCAGCCATGGAAGTAGGTTCTGCAGGTAATGAAGAAAATCGAGCGACGATGAAAGAATTGCATGGGAATACATGGCAAGGGAAGAAGACATGGATGAATCATGGAAGTTTTCGTAGTCCCCGGAAACACCTTGTCAAGTACCCAACAGAGCTTCCATTTCAAGCTCAAAAGTTGACTGTCTAG

Protein Analysis

91

Amino Acids

9.98

Weight (kDa)

10.11

Isoelectric Point (pI)

34.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 107
AclWI GGATC 1 cut(s) 70
AfaI GTAC 1 cut(s) 233
AgsI TTSAA 1 cut(s) 254
AluBI AGCT 2 cut(s) 244, 257
AluI AGCT 2 cut(s) 244, 257
AlwI GGATC 1 cut(s) 70
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 2 cut(s) 92, 95
AspS9I GGNCC 1 cut(s) 6
AsuC2I CCSGG 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 185
BbvCI CCTCAGC 1 cut(s) 10
BbvI GCAGC 2 cut(s) 104, 107
BcnI CCSGG 1 cut(s) 214
BfaI CTAG 1 cut(s) 274
BfmI CTRYAG 1 cut(s) 114
BfuAI ACCTGC 1 cut(s) 107
BisI GCNGC 2 cut(s) 93, 96
BlsI GCNGC 2 cut(s) 94, 97
Bme1390I CCNGG 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 214
BmsI GCATC 1 cut(s) 65
BpiI GAAGAC 1 cut(s) 185
Bpu10I CCTNAGC 1 cut(s) 10
BpuMI CCSGG 1 cut(s) 214
BsaJI CCNNGG 2 cut(s) 99, 212
BseDI CCNNGG 2 cut(s) 99, 212
BseGI GGATG 2 cut(s) 56, 192
BseMII CTCAG 1 cut(s) 24
BseRI GAGGAG 2 cut(s) 52, 55
BseXI GCAGC 2 cut(s) 104, 107
BshFI GGCC 1 cut(s) 8
BsiSI CCGG 1 cut(s) 214
BslFI GGGAC 1 cut(s) 195
BsmFI GGGAC 1 cut(s) 195
BsnI GGCC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 75
Bsp19I CCATGG 1 cut(s) 99
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 23
BspMAI CTGCAG 1 cut(s) 118
BspMI ACCTGC 1 cut(s) 107
BspPI GGATC 1 cut(s) 70
BssECI CCNNGG 2 cut(s) 99, 212
BssMI GATC 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 99
Bst4CI ACNGT 1 cut(s) 271
BstDEI CTNAG 1 cut(s) 10
BstDSI CCRYGG 1 cut(s) 99
BstF5I GGATG 2 cut(s) 56, 192
BstKTI GATC 1 cut(s) 78
BstMBI GATC 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 212
BstSFI CTRYAG 1 cut(s) 114
BstV1I GCAGC 2 cut(s) 104, 107
BstV2I GAAGAC 1 cut(s) 185
BsuRI GGCC 1 cut(s) 8
BtgI CCRYGG 1 cut(s) 99
BtsCI GGATG 2 cut(s) 56, 192
BveI ACCTGC 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 6
Csp6I GTAC 1 cut(s) 232
CviAII CATG 5 cut(s) 100, 155, 165, 183, 194
CviJI RGCY 5 cut(s) 8, 14, 98, 244, 257
CviKI_1 RGCY 5 cut(s) 8, 14, 98, 244, 257
CviQI GTAC 1 cut(s) 232
DdeI CTNAG 1 cut(s) 10
DpnI GATC 1 cut(s) 77
DpnII GATC 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 99
EcoO109I RGGNCCY 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 5 cut(s) 103, 158, 168, 186, 197
FaiI YATR 5 cut(s) 101, 156, 166, 184, 195
FaqI GGGAC 1 cut(s) 195
FatI CATG 5 cut(s) 99, 154, 164, 182, 193
Fnu4HI GCNGC 2 cut(s) 93, 96
FokI GGATG 2 cut(s) 43, 199
Fsp4HI GCNGC 2 cut(s) 93, 96
FspBI CTAG 1 cut(s) 274
GluI GCNGC 2 cut(s) 93, 96
HaeIII GGCC 1 cut(s) 8
HapII CCGG 1 cut(s) 214
Hin1II CATG 5 cut(s) 103, 158, 168, 186, 197
HincII GTYRAC 1 cut(s) 267
HindII GTYRAC 1 cut(s) 267
HinfI GANTC 1 cut(s) 190
HpaII CCGG 1 cut(s) 214
Hpy166II GTNNAC 1 cut(s) 267
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 1 cut(s) 43
Hpy8I GTNNAC 1 cut(s) 267
Hpy99I CGWCG 2 cut(s) 88, 142
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4V TGCA 3 cut(s) 56, 116, 154
HpyF3I CTNAG 1 cut(s) 10
Hsp92II CATG 5 cut(s) 103, 158, 168, 186, 197
Kzo9I GATC 1 cut(s) 75
LpnPI CCDG 2 cut(s) 102, 227
Lsp1109I GCAGC 2 cut(s) 104, 107
LweI GCATC 1 cut(s) 65
MaeI CTAG 1 cut(s) 274
MalI GATC 1 cut(s) 77
MboI GATC 1 cut(s) 75
MboII GAAGA 3 cut(s) 137, 187, 190
MluCI AATT 1 cut(s) 149
MnlI CCTC 4 cut(s) 19, 70, 73, 76
MspI CCGG 1 cut(s) 214
MspR9I CCNGG 1 cut(s) 214
NciI CCSGG 1 cut(s) 214
NcoI CCATGG 1 cut(s) 99
NdeII GATC 1 cut(s) 75
NlaIII CATG 5 cut(s) 103, 158, 168, 186, 197
PfeI GAWTC 1 cut(s) 190
PkrI GCNGC 2 cut(s) 94, 97
PspPI GGNCC 1 cut(s) 6
PstI CTGCAG 1 cut(s) 118
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
SatI GCNGC 2 cut(s) 93, 96
Sau3AI GATC 1 cut(s) 75
Sau96I GGNCC 1 cut(s) 6
ScrFI CCNGG 1 cut(s) 214
SetI ASST 5 cut(s) 112, 121, 225, 246, 259
SfaNI GCATC 1 cut(s) 65
SfcI CTRYAG 1 cut(s) 114
Sse9I AATT 1 cut(s) 149
SspMI CTAG 1 cut(s) 274
StyD4I CCNGG 1 cut(s) 212
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 1 cut(s) 271
TaqI TCGA 1 cut(s) 133
TasI AATT 1 cut(s) 149
TfiI GAWTC 1 cut(s) 190
TseI GCWGC 2 cut(s) 92, 95
TspDTI ATGAA 3 cut(s) 138, 158, 203
XspI CTAG 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.