Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001555

Physical Location & Seq

Genomic Coordinates Reverse (-)

18731979 .. 18732709

Gene Structure 731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G200600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGTTTGTTGCTGGGATGCTTTTAGTGTCGTATGGTCACCTTTTTATCTCAAACCTTGACTGGGTTTTGAGATTTAAGCTTAATGCACCCTTGACCAAGTACAACAGGAAGACTTTCTACACCCAAGAACCTGTTGTTGGGTACATACAATACAAACTACCCTTTTCAGAGCAAAGCAACTGGGAAAGGGGAACCACTCTCTTGGTTTTGAAACTTTTCTTGTTCTTTGTGGATATTGTATTACCCGGTTTAAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009694 GO:0009695 GO:0009791 GO:0009908 GO:0009987 GO:0010035 GO:0010193 GO:0010817 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0019752 GO:0022414 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042579 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046677 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0090567 GO:0099402 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

87

Amino Acids

10.11

Weight (kDa)

9.7

Isoelectric Point (pI)

23.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17990 AT1G17990 AT1G18020
fragaria_vesca	FvH4_5g32750
malus_domestica	MD08G1216100.v1.1 MD08G1216200.v1.1 MD15G1401200.v1.1 MD15G1401300.v1.1 MD15G1401800.v1.1 MD15G1402400.v1.1 MD15G1402700.v1.1
prunus_persica	Prupe.1G465800_v2.0.a1 Prupe.1G548300_v2.0.a1 Prupe.1G548400_v2.0.a1 Prupe.1G548600_v2.0.a1 Prupe.1G548700_v2.0.a1 Prupe.1G548800_v2.0.a1 Prupe.1G548900_v2.0.a1 Prupe.1G549000_v2.0.a1 Prupe.7G200600_v2.0.a1
pyrus_communis	pycom08g18710 pycom08g18720 pycom15g35950 pycom15g35960 pycom15g35970 pycom15g36010 pycom15g36020
rosa_chinensis	RchiOBHm_Chr2g0094571 RchiOBHm_Chr2g0094601 RchiOBHm_Chr2g0167371 RchiOBHm_Chr7g0230371 RchiOBHm_Chr7g0230381 RchiOBHm_Chr7g0230411 RchiOBHm_Chr7g0230421
rosa_laevigata	RLG00000001497 RLG00000009949 RLG00000016505 RLG00000021711
rosa_multiflora	Rmu_co8113900.1_g000001 Rmu_sc0001840.1_g000007 Rmu_sc0002541.1_g000033 Rmu_sc0007103.1_g000019
rosa_roxburghii	Rroxscaffold_2G00083570
rosa_rugosa	Rorug02G0045500 Rorug02G0529800 Rorug07G0260300
rosa_samantha	Rh2BG093600 Rh2BG608200
rosa_wichuraiana	Rw2G049670 Rw7G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	101, 143
AfiI	CCNNNNNNNGG	2 cut(s)	61, 137
AgsI	TTSAA	1 cut(s)	211
AjuI	GAANNNNNNNTTGG	2 cut(s)	120, 152
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Asp700I	GAANNNNTTC	2 cut(s)	113, 215
AsuC2I	CCSGG	1 cut(s)	246
AsuHPI	GGTGA	1 cut(s)	29
BarI	GAAGNNNNNNTAC	2 cut(s)	101, 133
BbsI	GAAGAC	1 cut(s)	116
BcnI	CCSGG	1 cut(s)	246
Bme1390I	CCNGG	1 cut(s)	246
BmiI	GGNNCC	1 cut(s)	193
BmrFI	CCNGG	1 cut(s)	246
BmrI	ACTGGG	2 cut(s)	70, 190
BmsI	GCATC	1 cut(s)	6
BmuI	ACTGGG	2 cut(s)	70, 190
BpiI	GAAGAC	1 cut(s)	116
BpuMI	CCSGG	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 137
Bse1I	ACTGG	2 cut(s)	65, 185
BseGI	GGATG	1 cut(s)	21
BseLI	CCNNNNNNNGG	2 cut(s)	61, 137
BseNI	ACTGG	2 cut(s)	65, 185
BseYI	CCCAGC	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	246
BslI	CCNNNNNNNGG	2 cut(s)	61, 137
BspLI	GGNNCC	1 cut(s)	193
BsrI	ACTGG	2 cut(s)	65, 185
BstEII	GGTNACC	1 cut(s)	35
BstF5I	GGATG	1 cut(s)	21
BstPI	GGTNACC	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	244
BstV2I	GAAGAC	1 cut(s)	116
BstXI	CCANNNNNNTGG	1 cut(s)	202
BtsCI	GGATG	1 cut(s)	21
Csp6I	GTAC	2 cut(s)	100, 142
CviJI	RGCY	1 cut(s)	79
CviKI_1	RGCY	1 cut(s)	79
CviQI	GTAC	2 cut(s)	100, 142
DraI	TTTAAA	1 cut(s)	252
Eco91I	GGTNACC	1 cut(s)	35
EcoO65I	GGTNACC	1 cut(s)	35
FaiI	YATR	2 cut(s)	33, 146
FokI	GGATG	1 cut(s)	28
GsaI	CCCAGC	1 cut(s)	15
HapII	CCGG	1 cut(s)	246
HindIII	AAGCTT	1 cut(s)	77
HpaII	CCGG	1 cut(s)	246
HphI	GGTGA	1 cut(s)	29
Hpy188I	TCNGA	1 cut(s)	169
HpyCH4V	TGCA	1 cut(s)	86
LpnPI	CCDG	4 cut(s)	46, 91, 144, 166
LweI	GCATC	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	35
MboII	GAAGA	1 cut(s)	121
MroXI	GAANNNNTTC	2 cut(s)	113, 215
MseI	TTAA	3 cut(s)	75, 81, 251
MspI	CCGG	1 cut(s)	246
MspR9I	CCNGG	1 cut(s)	246
NciI	CCSGG	1 cut(s)	246
NlaIV	GGNNCC	1 cut(s)	193
NmuCI	GTSAC	1 cut(s)	35
PdmI	GAANNNNTTC	2 cut(s)	113, 215
PspEI	GGTNACC	1 cut(s)	35
PspFI	CCCAGC	1 cut(s)	11
PspN4I	GGNNCC	1 cut(s)	193
RsaI	GTAC	2 cut(s)	101, 143
RsaNI	GTAC	2 cut(s)	100, 142
SaqAI	TTAA	3 cut(s)	75, 81, 251
ScrFI	CCNGG	1 cut(s)	246
SetI	ASST	4 cut(s)	42, 57, 81, 133
SfaNI	GCATC	1 cut(s)	6
StyD4I	CCNGG	1 cut(s)	244
TatI	WGTACW	1 cut(s)	99
Tru1I	TTAA	3 cut(s)	75, 81, 251
Tru9I	TTAA	3 cut(s)	75, 81, 251
TseFI	GTSAC	1 cut(s)	35
Tsp45I	GTSAC	1 cut(s)	35
XmnI	GAANNNNTTC	2 cut(s)	113, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.