Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001555

Physical Location & Seq

Genomic Coordinates Reverse (-)

16398640 .. 16400598

Gene Structure 1959 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001497

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGCCTGGTTTATGGACAAAGGAACAAGTTGAAGCATGGAAACCCATCGTTGATGCAGTTCATTCTAAAGGTGGTGTATTCTTTTGTCAGATCTGGCATGCAGGAAGAGTTTCAAATAGTGCTCCAATTTCTTGTACTGACAAGCCACTAACCCCTCAAGTACTATCTGATGGTGTTGATGTTGCTGAATTCACTCCTCCAAGGCAATTAAGGACATATGAAATCCCACAAATTGTCAATGACTTTAGACTTGCTGCACGGAATGCAATCAAAGCTGGCTTTGATGGGGTTGAAATTCATGGAGCTAACGGTTACCTTATTGATCAGTTTATGAAAGACCAAGTGAATGATCGAGCAGACCAATATGGTGGATCTCTAGAGAATCGCTGCCAATTTGCTCTGGAAATCATTGAAGCAGTTGTTAATAAAATAGGAGCAGTTAAAGTTGGAATTAGATTATCTCCATTTGCCGACTATAGGGAATCAGGGGATTCTAACTCTGAAGCATTGGACCTTTATATGGTTCAATCCTTGAACAAATATGGGATTCTGTACTGCCATGTGATTGAGCCAAGAATGAAGGAAGCTGCAGTGAAAAGTGAAAGTGCTGACAGTCTTCTACCCATGAGAAAGGCTTTTAATGGTACCTTCATTGCTGCTGGTAGTGGTAGTTTTGACAGGGAAGATGGGAACAATGCAGTGGCTGAGGGCTGTGCAGATCTTATTGCTTACGACCGTTGGTTCTTGTCTAATCCTGATTTGCCAAAGAGATTTGAGATTAATGCTCCCGTAAACAAGTATGACAGAAGTACTTTCTACACTTCTCATCCAGTTGTTGGTTACACTGATTATCCATTTCTTGAAACCACTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

292

Amino Acids

32.29

Weight (kDa)

5.12

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	2 - 262	9.5e-64	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17990 AT1G17990 AT1G18020
fragaria_vesca	FvH4_5g32750
malus_domestica	MD08G1216100.v1.1 MD08G1216200.v1.1 MD15G1401200.v1.1 MD15G1401300.v1.1 MD15G1401800.v1.1 MD15G1402400.v1.1 MD15G1402700.v1.1
prunus_persica	Prupe.1G465800_v2.0.a1 Prupe.1G548300_v2.0.a1 Prupe.1G548400_v2.0.a1 Prupe.1G548600_v2.0.a1 Prupe.1G548700_v2.0.a1 Prupe.1G548800_v2.0.a1 Prupe.1G548900_v2.0.a1 Prupe.1G549000_v2.0.a1 Prupe.7G200600_v2.0.a1
pyrus_communis	pycom08g18710 pycom08g18720 pycom15g35950 pycom15g35960 pycom15g35970 pycom15g36010 pycom15g36020
rosa_chinensis	RchiOBHm_Chr2g0094571 RchiOBHm_Chr2g0094601 RchiOBHm_Chr2g0167371 RchiOBHm_Chr7g0230371 RchiOBHm_Chr7g0230381 RchiOBHm_Chr7g0230411 RchiOBHm_Chr7g0230421
rosa_laevigata	RLG00000001497 RLG00000009949 RLG00000016505 RLG00000021711
rosa_multiflora	Rmu_co8113900.1_g000001 Rmu_sc0001840.1_g000007 Rmu_sc0002541.1_g000033 Rmu_sc0007103.1_g000019
rosa_roxburghii	Rroxscaffold_2G00083570
rosa_rugosa	Rorug02G0045500 Rorug02G0529800 Rorug07G0260300
rosa_samantha	Rh2BG093600 Rh2BG608200
rosa_wichuraiana	Rw2G049670 Rw7G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	644
AccB1I	GGYRCC	1 cut(s)	644
AccB7I	CCANNNNNTGG	1 cut(s)	836
AclWI	GGATC	1 cut(s)	379
AcsI	RAATTY	2 cut(s)	188, 294
AcuI	CTGAAG	1 cut(s)	522
AfaI	GTAC	5 cut(s)	136, 162, 554, 646, 811
AfiI	CCNNNNNNNGG	3 cut(s)	477, 520, 836
AgsI	TTSAA	7 cut(s)	32, 114, 293, 413, 527, 535, 863
AjnI	CCWGG	1 cut(s)	4
AluBI	AGCT	3 cut(s)	275, 305, 587
AluI	AGCT	3 cut(s)	275, 305, 587
Alw21I	GWGCWC	1 cut(s)	124
AlwI	GGATC	1 cut(s)	379
AlwNI	CAGNNNCTG	1 cut(s)	704
ApeKI	GCWGC	4 cut(s)	254, 387, 587, 656
ApoI	RAATTY	2 cut(s)	188, 294
AseI	ATTAAT	1 cut(s)	780
Asp700I	GAANNNNTTC	1 cut(s)	109
Asp718I	GGTACC	1 cut(s)	644
AspS9I	GGNCC	1 cut(s)	511
AvaII	GGWCC	1 cut(s)	511
BanI	GGYRCC	1 cut(s)	644
BbsI	GAAGAC	1 cut(s)	608
Bbv12I	GWGCWC	1 cut(s)	124
BbvCI	CCTCAGC	1 cut(s)	705
BbvI	GCAGC	4 cut(s)	241, 374, 574, 643
BccI	CCATC	4 cut(s)	53, 164, 278, 680
BciT130I	CCWGG	1 cut(s)	6
BclI	TGATCA	1 cut(s)	322
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	2 cut(s)	475, 588
BglII	AGATCT	2 cut(s)	90, 718
BisI	GCNGC	4 cut(s)	255, 388, 588, 657
BlsI	GCNGC	4 cut(s)	256, 389, 589, 658
BmcAI	AGTACT	2 cut(s)	162, 811
Bme1390I	CCNGG	1 cut(s)	6
Bme18I	GGWCC	1 cut(s)	511
BmgT120I	GGNCC	1 cut(s)	511
BmiI	GGNNCC	1 cut(s)	646
BmrFI	CCNGG	1 cut(s)	6
BmsI	GCATC	1 cut(s)	43
BpiI	GAAGAC	1 cut(s)	608
Bpu10I	CCTNAGC	1 cut(s)	705
BpuEI	CTTGAG	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	3 cut(s)	477, 520, 836
Bse1I	ACTGG	1 cut(s)	830
Bse3DI	GCAATG	1 cut(s)	651
BseBI	CCWGG	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	200
BseGI	GGATG	1 cut(s)	826
BseLI	CCNNNNNNNGG	3 cut(s)	477, 520, 836
BseMI	GCAATG	1 cut(s)	651
BseMII	CTCAG	1 cut(s)	696
BseNI	ACTGG	1 cut(s)	830
BseRI	GAGGAG	1 cut(s)	186
BseXI	GCAGC	4 cut(s)	241, 374, 574, 643
BsgI	GTGCAG	2 cut(s)	240, 735
Bsh1285I	CGRYCG	1 cut(s)	736
BshNI	GGYRCC	1 cut(s)	644
BsiEI	CGRYCG	1 cut(s)	736
BsiHKAI	GWGCWC	1 cut(s)	124
BslI	CCNNNNNNNGG	3 cut(s)	477, 520, 836
BsmI	GAATGC	1 cut(s)	268
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp143I	GATC	5 cut(s)	90, 322, 349, 371, 718
BspCNI	CTCAG	1 cut(s)	697
BspLI	GGNNCC	1 cut(s)	646
BspMAI	CTGCAG	1 cut(s)	592
BspPI	GGATC	1 cut(s)	379
BspT107I	GGYRCC	1 cut(s)	644
BsrDI	GCAATG	1 cut(s)	651
BsrI	ACTGG	1 cut(s)	830
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	5 cut(s)	90, 322, 349, 371, 718
BssT1I	CCWWGG	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	6
Bst4CI	ACNGT	3 cut(s)	311, 614, 737
Bst6I	CTCTTC	1 cut(s)	100
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstC8I	GCNNGC	2 cut(s)	99, 277
BstDEI	CTNAG	1 cut(s)	705
BstEII	GGTNACC	1 cut(s)	311
BstF5I	GGATG	1 cut(s)	826
BstKTI	GATC	5 cut(s)	93, 325, 352, 374, 721
BstMBI	GATC	5 cut(s)	90, 322, 349, 371, 718
BstMCI	CGRYCG	1 cut(s)	736
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 272
BstNI	CCWGG	1 cut(s)	6
BstNSI	RCATGY	1 cut(s)	101
BstPI	GGTNACC	1 cut(s)	311
BstSCI	CCNGG	1 cut(s)	4
BstSFI	CTRYAG	2 cut(s)	475, 588
BstV1I	GCAGC	4 cut(s)	241, 374, 574, 643
BstV2I	GAAGAC	1 cut(s)	608
BstX2I	RGATCY	3 cut(s)	90, 371, 718
BstXI	CCANNNNNNTGG	1 cut(s)	368
BstYI	RGATCY	3 cut(s)	90, 371, 718
BtsCI	GGATG	1 cut(s)	826
BtsI	GCAGTG	3 cut(s)	597, 705, 867
BtsIMutI	CAGTG	4 cut(s)	597, 705, 843, 867
Cac8I	GCNNGC	2 cut(s)	99, 277
CaiI	CAGNNNCTG	1 cut(s)	704
Cfr13I	GGNCC	1 cut(s)	511
Csp6I	GTAC	5 cut(s)	135, 161, 553, 645, 810
CviAII	CATG	5 cut(s)	36, 98, 299, 560, 625
CviJI	RGCY	9 cut(s)	145, 275, 279, 305, 571, 587, 635, 704, 711
CviKI_1	RGCY	9 cut(s)	145, 275, 279, 305, 571, 587, 635, 704, 711
CviQI	GTAC	5 cut(s)	135, 161, 553, 645, 810
DdeI	CTNAG	1 cut(s)	705
DpnI	GATC	5 cut(s)	92, 324, 351, 373, 720
DpnII	GATC	5 cut(s)	90, 322, 349, 371, 718
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	511
Eco57I	CTGAAG	1 cut(s)	522
Eco91I	GGTNACC	1 cut(s)	311
EcoO65I	GGTNACC	1 cut(s)	311
EcoRI	GAATTC	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	200
FaeI	CATG	5 cut(s)	39, 101, 302, 563, 628
FatI	CATG	5 cut(s)	35, 97, 298, 559, 624
FauNDI	CATATG	1 cut(s)	217
FbaI	TGATCA	1 cut(s)	322
Fnu4HI	GCNGC	4 cut(s)	255, 388, 588, 657
FokI	GGATG	1 cut(s)	813
Fsp4HI	GCNGC	4 cut(s)	255, 388, 588, 657
FspBI	CTAG	1 cut(s)	377
GluI	GCNGC	4 cut(s)	255, 388, 588, 657
Hin1II	CATG	5 cut(s)	39, 101, 302, 563, 628
HinfI	GANTC	4 cut(s)	382, 482, 491, 547
Hpy166II	GTNNAC	1 cut(s)	793
Hpy188I	TCNGA	3 cut(s)	90, 169, 502
Hpy188III	TCNNGA	4 cut(s)	377, 401, 755, 860
Hpy8I	GTNNAC	1 cut(s)	793
HpyAV	CCTTC	2 cut(s)	574, 658
HpyCH4III	ACNGT	3 cut(s)	311, 614, 737
HpyCH4V	TGCA	7 cut(s)	56, 101, 257, 266, 590, 698, 716
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 272
HpyF3I	CTNAG	1 cut(s)	705
Hsp92II	CATG	5 cut(s)	39, 101, 302, 563, 628
KpnI	GGTACC	1 cut(s)	648
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	5 cut(s)	90, 322, 349, 371, 718
LmnI	GCTCC	4 cut(s)	127, 302, 434, 790
Lsp1109I	GCAGC	4 cut(s)	241, 374, 574, 643
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	1 cut(s)	377
MaeIII	GTNAC	2 cut(s)	311, 839
MalI	GATC	5 cut(s)	92, 324, 351, 373, 720
MboI	GATC	5 cut(s)	90, 322, 349, 371, 718
MboII	GAAGA	3 cut(s)	117, 608, 695
MflI	RGATCY	3 cut(s)	90, 371, 718
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	7 cut(s)	126, 188, 206, 231, 294, 392, 450
MmeI	TCCRAC	1 cut(s)	427
MnlI	CCTC	3 cut(s)	165, 207, 700
MroXI	GAANNNNTTC	1 cut(s)	109
MseI	TTAA	6 cut(s)	209, 423, 441, 639, 780, 874
MspR9I	CCNGG	1 cut(s)	6
Mva1269I	GAATGC	1 cut(s)	268
MvaI	CCWGG	1 cut(s)	6
MwoI	GCNNNNNNNGC	2 cut(s)	263, 272
NdeI	CATATG	1 cut(s)	217
NdeII	GATC	5 cut(s)	90, 322, 349, 371, 718
NlaIII	CATG	5 cut(s)	39, 101, 302, 563, 628
NlaIV	GGNNCC	1 cut(s)	646
NspI	RCATGY	1 cut(s)	101
PaeI	GCATGC	1 cut(s)	101
PctI	GAATGC	1 cut(s)	268
PdmI	GAANNNNTTC	1 cut(s)	109
PfeI	GAWTC	4 cut(s)	382, 482, 491, 547
PflMI	CCANNNNNTGG	1 cut(s)	836
PkrI	GCNGC	4 cut(s)	256, 389, 589, 658
PshBI	ATTAAT	1 cut(s)	780
Psp6I	CCWGG	1 cut(s)	4
PspEI	GGTNACC	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	646
PspPI	GGNCC	1 cut(s)	511
PstI	CTGCAG	1 cut(s)	592
PstNI	CAGNNNCTG	1 cut(s)	704
PsuI	RGATCY	3 cut(s)	90, 371, 718
RsaI	GTAC	5 cut(s)	136, 162, 554, 646, 811
RsaNI	GTAC	5 cut(s)	135, 161, 553, 645, 810
SaqAI	TTAA	6 cut(s)	209, 423, 441, 639, 780, 874
SatI	GCNGC	4 cut(s)	255, 388, 588, 657
Sau3AI	GATC	5 cut(s)	90, 322, 349, 371, 718
Sau96I	GGNCC	1 cut(s)	511
ScaI	AGTACT	2 cut(s)	162, 811
ScrFI	CCNGG	1 cut(s)	6
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	7 cut(s)	73, 277, 307, 318, 516, 589, 650
SfaNI	GCATC	1 cut(s)	43
SfcI	CTRYAG	2 cut(s)	475, 588
SinI	GGWCC	1 cut(s)	511
SmlI	CTYRAG	1 cut(s)	156
SmoI	CTYRAG	1 cut(s)	156
SphI	GCATGC	1 cut(s)	101
Sse9I	AATT	7 cut(s)	126, 188, 206, 231, 294, 392, 450
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	1 cut(s)	4
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	3 cut(s)	311, 614, 737
TaqI	TCGA	1 cut(s)	352
TasI	AATT	7 cut(s)	126, 188, 206, 231, 294, 392, 450
TatI	WGTACW	4 cut(s)	134, 160, 552, 809
TfiI	GAWTC	4 cut(s)	382, 482, 491, 547
Tru1I	TTAA	6 cut(s)	209, 423, 441, 639, 780, 874
Tru9I	TTAA	6 cut(s)	209, 423, 441, 639, 780, 874
TscAI	CASTG	4 cut(s)	597, 705, 850, 874
TseI	GCWGC	4 cut(s)	254, 387, 587, 656
TspDTI	ATGAA	6 cut(s)	50, 234, 287, 347, 593, 640
TspGWI	ACGGA	1 cut(s)	274
TspRI	CASTG	4 cut(s)	597, 705, 850, 874
Van91I	CCANNNNNTGG	1 cut(s)	836
VpaK11BI	GGWCC	1 cut(s)	511
VspI	ATTAAT	1 cut(s)	780
XapI	RAATTY	2 cut(s)	188, 294
XbaI	TCTAGA	1 cut(s)	376
XceI	RCATGY	1 cut(s)	101
XmnI	GAANNNNTTC	1 cut(s)	109
XspI	CTAG	1 cut(s)	377
ZrmI	AGTACT	2 cut(s)	162, 811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.