Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001555

Physical Location & Seq

Genomic Coordinates Reverse (-)

44868537 .. 44871184

Gene Structure 2648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G548700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGTCTGCTCAACCTCCCACAATTCCTCTCCTTACCCCTCACAAAATGGGAAAGTTCAACCTTTCTCATAGAGTTGTTTTAGCTCCATTGACTAGAATGAGATCATACAACACTGTTCCACAGCCGCATGCCATCTTATATTATTCTCAGAGAACATCTGAAGGGGGTCTTCTCATAGCTGAAGCCAGTGGAGTTTCTGACACAGCTCAAGGGTTCCCAGATTGTCCTGGTTTATGGACAAGGGAGCAAGTTGAAGCATGGAAACCGATTGTTGACGCTGTTCATGCAAAAGGCGGTGTTTTCTTCTGTCAGATTTGGCATGCGGGGCGGGTTTCAAACAGCGGTTTCCAGCCAAATGGGCAGGCTCCAATCTCTTGTACCGACAAGCCACTTACCCCCCAACTACTAGCTAATGGCGTTGACGTTGCTCAATACACACCTCCAAGGCGATTAAGGACAGATGAGATTCCACAAATTGTCAATGATTTCAGACTTGCTGCAAGGAATGCTATTGAAGCTGGCTTTGATGGGGTTGAAATTCATGGGGCGCATGGCTACCTGATTGATCAGTTTATGAAAGACCAAGTGAACGATCGAACAGATGAATATGGTGGATCGCTGGAGAATCGTTGCCGGTTTGCTCTGGAAATCGTTGAAGCTGTTGTTAATGAGATAGGAGCAGATAAAGTTGGAATTAGATTATCTCCATTTGCGGACTATATGGAATCAGCGGATTCAGATCCGAAAGCATTAGGCCTTTATATGGTCAAATCCTTGAACAAATATGGGATCCAGTACTGCCATGTGGTTGAGCCAAGAATGAAGGCAGTTGGAGACAAAATTGAAAGCCCTGACAGTCTTCTGCCCATGAGAGAAGCTTTCAAAGGCACCTTCATTGCTGCTGGTGGTTTTGACAGGGAAGATGGGAACAATGCTGTGGCTGAGGGCCATGCAGATCTTATTGCCTATGGACGTTGGTTCTTGGCTAATCCAGATTTGCCAAAAAGATTTGAGCTTAATGCTCCTCTAAATAAGTACAACAGAGATACGTTCTACATATCTGATCCGGTTGTTGGTTACACTGATTATCCATTTCTAGAAACCACCGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

371

Amino Acids

40.92

Weight (kDa)

5.53

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17990 AT1G17990 AT1G18020
fragaria_vesca	FvH4_5g32750
malus_domestica	MD08G1216100.v1.1 MD08G1216200.v1.1 MD15G1401200.v1.1 MD15G1401300.v1.1 MD15G1401800.v1.1 MD15G1402400.v1.1 MD15G1402700.v1.1
prunus_persica	Prupe.1G465800_v2.0.a1 Prupe.1G548300_v2.0.a1 Prupe.1G548400_v2.0.a1 Prupe.1G548600_v2.0.a1 Prupe.1G548700_v2.0.a1 Prupe.1G548800_v2.0.a1 Prupe.1G548900_v2.0.a1 Prupe.1G549000_v2.0.a1 Prupe.7G200600_v2.0.a1
pyrus_communis	pycom08g18710 pycom08g18720 pycom15g35950 pycom15g35960 pycom15g35970 pycom15g36010 pycom15g36020
rosa_chinensis	RchiOBHm_Chr2g0094571 RchiOBHm_Chr2g0094601 RchiOBHm_Chr2g0167371 RchiOBHm_Chr7g0230371 RchiOBHm_Chr7g0230381 RchiOBHm_Chr7g0230411 RchiOBHm_Chr7g0230421
rosa_laevigata	RLG00000001497 RLG00000009949 RLG00000016505 RLG00000021711
rosa_multiflora	Rmu_co8113900.1_g000001 Rmu_sc0001840.1_g000007 Rmu_sc0002541.1_g000033 Rmu_sc0007103.1_g000019
rosa_roxburghii	Rroxscaffold_2G00083570
rosa_rugosa	Rorug02G0045500 Rorug02G0529800 Rorug07G0260300
rosa_samantha	Rh2BG093600 Rh2BG608200
rosa_wichuraiana	Rw2G049670 Rw7G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	887
AciI	CCGC	8 cut(s)	125, 294, 323, 328, 342, 713, 731, 1107
AclWI	GGATC	5 cut(s)	622, 734, 784, 797, 1058
AcsI	RAATTY	1 cut(s)	537
AcuI	CTGAAG	2 cut(s)	180, 201
AfaI	GTAC	3 cut(s)	379, 797, 1037
AfiI	CCNNNNNNNGG	2 cut(s)	763, 1073
AgsI	TTSAA	9 cut(s)	58, 254, 336, 515, 536, 656, 778, 845, 883
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	8 cut(s)	83, 179, 206, 410, 518, 659, 878, 1015
AluI	AGCT	8 cut(s)	83, 179, 206, 410, 518, 659, 878, 1015
Alw26I	GTCTC	1 cut(s)	828
AlwI	GGATC	5 cut(s)	622, 734, 784, 797, 1058
AoxI	GGCC	2 cut(s)	754, 946
ApeKI	GCWGC	2 cut(s)	497, 899
ApoI	RAATTY	1 cut(s)	537
AspLEI	GCGC	1 cut(s)	550
AspS9I	GGNCC	1 cut(s)	946
BamHI	GGATCC	1 cut(s)	789
BanI	GGYRCC	1 cut(s)	887
BbsI	GAAGAC	2 cut(s)	161, 851
BbvCI	CCTCAGC	1 cut(s)	942
BbvI	GCAGC	2 cut(s)	484, 886
BccI	CCATC	3 cut(s)	140, 521, 917
BciT130I	CCWGG	1 cut(s)	228
BclI	TGATCA	1 cut(s)	565
BcoDI	GTCTC	1 cut(s)	828
BfaI	CTAG	3 cut(s)	93, 407, 1097
BglI	GCCNNNNNGGC	1 cut(s)	358
BglII	AGATCT	1 cut(s)	955
BisI	GCNGC	3 cut(s)	125, 498, 900
BlsI	GCNGC	3 cut(s)	126, 499, 901
BmcAI	AGTACT	1 cut(s)	797
Bme1390I	CCNGG	1 cut(s)	228
BmgT120I	GGNCC	1 cut(s)	946
BmiI	GGNNCC	4 cut(s)	215, 366, 791, 889
BmrFI	CCNGG	1 cut(s)	228
BpiI	GAAGAC	2 cut(s)	161, 851
BpmI	CTGGAG	1 cut(s)	641
Bpu10I	CCTNAGC	1 cut(s)	942
BpuEI	CTTGAG	1 cut(s)	192
BsaBI	GATNNNNATC	1 cut(s)	738
BsaJI	CCNNGG	1 cut(s)	443
BsaWI	WCCGGW	1 cut(s)	1066
Bsc4I	CCNNNNNNNGG	2 cut(s)	763, 1073
Bse118I	RCCGGY	1 cut(s)	633
Bse1I	ACTGG	2 cut(s)	186, 793
Bse3DI	GCAATG	1 cut(s)	894
Bse8I	GATNNNNATC	1 cut(s)	738
BseBI	CCWGG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	443
BseJI	GATNNNNATC	1 cut(s)	738
BseLI	CCNNNNNNNGG	2 cut(s)	763, 1073
BseMI	GCAATG	1 cut(s)	894
BseMII	CTCAG	2 cut(s)	161, 933
BseNI	ACTGG	2 cut(s)	186, 793
BseRI	GAGGAG	1 cut(s)	1014
BseXI	GCAGC	2 cut(s)	484, 886
Bsh1285I	CGRYCG	1 cut(s)	595
BshFI	GGCC	2 cut(s)	756, 948
BshNI	GGYRCC	1 cut(s)	887
BsiEI	CGRYCG	1 cut(s)	595
BsiSI	CCGG	2 cut(s)	634, 1067
BslI	CCNNNNNNNGG	2 cut(s)	763, 1073
BsmAI	GTCTC	1 cut(s)	828
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	2 cut(s)	756, 948
Bsp143I	GATC	8 cut(s)	101, 565, 592, 614, 739, 789, 955, 1063
BspACI	CCGC	8 cut(s)	125, 294, 323, 328, 342, 713, 731, 1107
BspANI	GGCC	2 cut(s)	756, 948
BspCNI	CTCAG	2 cut(s)	160, 934
BspLI	GGNNCC	4 cut(s)	215, 366, 791, 889
BspPI	GGATC	5 cut(s)	622, 734, 784, 797, 1058
BspT107I	GGYRCC	1 cut(s)	887
BsrDI	GCAATG	1 cut(s)	894
BsrFI	RCCGGY	1 cut(s)	633
BsrI	ACTGG	2 cut(s)	186, 793
BssAI	RCCGGY	1 cut(s)	633
BssECI	CCNNGG	1 cut(s)	443
BssMI	GATC	8 cut(s)	101, 565, 592, 614, 739, 789, 955, 1063
BssT1I	CCWWGG	1 cut(s)	443
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	115, 857
BstAPI	GCANNNNNTGC	1 cut(s)	506
BstC8I	GCNNGC	4 cut(s)	129, 321, 363, 520
BstDEI	CTNAG	2 cut(s)	147, 942
BstHHI	GCGC	1 cut(s)	550
BstKTI	GATC	8 cut(s)	104, 568, 595, 617, 742, 792, 958, 1066
BstMAI	GTCTC	1 cut(s)	828
BstMBI	GATC	8 cut(s)	101, 565, 592, 614, 739, 789, 955, 1063
BstMCI	CGRYCG	1 cut(s)	595
BstMWI	GCNNNNNNNGC	5 cut(s)	284, 325, 358, 506, 515
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	2 cut(s)	131, 323
BstSCI	CCNGG	1 cut(s)	226
BstV1I	GCAGC	2 cut(s)	484, 886
BstV2I	GAAGAC	2 cut(s)	161, 851
BstX2I	RGATCY	3 cut(s)	739, 789, 955
BstXI	CCANNNNNNTGG	1 cut(s)	356
BstYI	RGATCY	3 cut(s)	739, 789, 955
BsuRI	GGCC	2 cut(s)	756, 948
BtsIMutI	CAGTG	3 cut(s)	111, 193, 1080
Cac8I	GCNNGC	4 cut(s)	129, 321, 363, 520
CfoI	GCGC	1 cut(s)	550
Cfr10I	RCCGGY	1 cut(s)	633
Cfr13I	GGNCC	1 cut(s)	946
CseI	GACGC	1 cut(s)	284
Csp6I	GTAC	3 cut(s)	378, 796, 1036
CviAII	CATG	9 cut(s)	128, 258, 284, 320, 542, 551, 803, 868, 950
CviQI	GTAC	3 cut(s)	378, 796, 1036
DdeI	CTNAG	2 cut(s)	147, 942
DpnI	GATC	8 cut(s)	103, 567, 594, 616, 741, 791, 957, 1065
DpnII	GATC	8 cut(s)	101, 565, 592, 614, 739, 789, 955, 1063
Eco130I	CCWWGG	1 cut(s)	443
Eco147I	AGGCCT	1 cut(s)	756
Eco57I	CTGAAG	2 cut(s)	180, 201
EcoRII	CCWGG	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	443
ErhI	CCWWGG	1 cut(s)	443
FaeI	CATG	9 cut(s)	131, 261, 287, 323, 545, 554, 806, 871, 953
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FatI	CATG	9 cut(s)	127, 257, 283, 319, 541, 550, 802, 867, 949
FauI	CCCGC	2 cut(s)	316, 321
FbaI	TGATCA	1 cut(s)	565
Fnu4HI	GCNGC	3 cut(s)	125, 498, 900
Fsp4HI	GCNGC	3 cut(s)	125, 498, 900
FspBI	CTAG	3 cut(s)	93, 407, 1097
GlaI	GCGC	1 cut(s)	549
GluI	GCNGC	3 cut(s)	125, 498, 900
GsuI	CTGGAG	1 cut(s)	641
HaeIII	GGCC	2 cut(s)	756, 948
HapII	CCGG	2 cut(s)	634, 1067
HgaI	GACGC	1 cut(s)	284
HhaI	GCGC	1 cut(s)	550
Hin1II	CATG	9 cut(s)	131, 261, 287, 323, 545, 554, 806, 871, 953
Hin6I	GCGC	1 cut(s)	548
HinP1I	GCGC	1 cut(s)	548
HincII	GTYRAC	2 cut(s)	274, 421
HindII	GTYRAC	2 cut(s)	274, 421
HindIII	AAGCTT	1 cut(s)	876
HinfI	GANTC	4 cut(s)	466, 625, 725, 734
HpaII	CCGG	2 cut(s)	634, 1067
Hpy166II	GTNNAC	3 cut(s)	274, 421, 589
Hpy188I	TCNGA	8 cut(s)	150, 160, 199, 312, 491, 739, 744, 1063
Hpy188III	TCNNGA	3 cut(s)	644, 992, 1097
Hpy8I	GTNNAC	3 cut(s)	274, 421, 589
HpyAV	CCTTC	3 cut(s)	155, 817, 901
HpyCH4III	ACNGT	2 cut(s)	115, 857
HpyCH4IV	ACGT	3 cut(s)	423, 973, 1049
HpyCH4V	TGCA	3 cut(s)	287, 500, 953
HpyF10VI	GCNNNNNNNGC	5 cut(s)	284, 325, 358, 506, 515
HpyF3I	CTNAG	2 cut(s)	147, 942
HpySE526I	ACGT	3 cut(s)	423, 973, 1049
Hsp92II	CATG	9 cut(s)	131, 261, 287, 323, 545, 554, 806, 871, 953
HspAI	GCGC	1 cut(s)	548
Ksp22I	TGATCA	1 cut(s)	565
Kzo9I	GATC	8 cut(s)	101, 565, 592, 614, 739, 789, 955, 1063
LmnI	GCTCC	5 cut(s)	88, 244, 370, 677, 1027
Lsp1109I	GCAGC	2 cut(s)	484, 886
MaeI	CTAG	3 cut(s)	93, 407, 1097
MaeII	ACGT	3 cut(s)	423, 973, 1049
MaeIII	GTNAC	1 cut(s)	1076
MalI	GATC	8 cut(s)	103, 567, 594, 616, 741, 791, 957, 1065
MboI	GATC	8 cut(s)	101, 565, 592, 614, 739, 789, 955, 1063
MboII	GAAGA	4 cut(s)	161, 295, 851, 932
MflI	RGATCY	3 cut(s)	739, 789, 955
MluCI	AATT	5 cut(s)	21, 474, 537, 693, 840
MmeI	TCCRAC	2 cut(s)	670, 811
MnlI	CCTC	6 cut(s)	24, 36, 48, 450, 937, 1035
MseI	TTAA	4 cut(s)	452, 666, 1017, 1111
MspA1I	CMGCKG	2 cut(s)	342, 731
MspI	CCGG	2 cut(s)	634, 1067
MspR9I	CCNGG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	5 cut(s)	284, 325, 358, 506, 515
NdeII	GATC	8 cut(s)	101, 565, 592, 614, 739, 789, 955, 1063
NlaIII	CATG	9 cut(s)	131, 261, 287, 323, 545, 554, 806, 871, 953
NlaIV	GGNNCC	4 cut(s)	215, 366, 791, 889
NspI	RCATGY	2 cut(s)	131, 323
PaeI	GCATGC	2 cut(s)	131, 323
PceI	AGGCCT	1 cut(s)	756
PctI	GAATGC	1 cut(s)	511
PfeI	GAWTC	4 cut(s)	466, 625, 725, 734
PkrI	GCNGC	3 cut(s)	126, 499, 901
Ple19I	CGATCG	1 cut(s)	595
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	4 cut(s)	215, 366, 791, 889
PspPI	GGNCC	1 cut(s)	946
PsuI	RGATCY	3 cut(s)	739, 789, 955
PvuI	CGATCG	1 cut(s)	595
RsaI	GTAC	3 cut(s)	379, 797, 1037
RsaNI	GTAC	3 cut(s)	378, 796, 1036
SaqAI	TTAA	4 cut(s)	452, 666, 1017, 1111
SatI	GCNGC	3 cut(s)	125, 498, 900
Sau3AI	GATC	8 cut(s)	101, 565, 592, 614, 739, 789, 955, 1063
Sau96I	GGNCC	1 cut(s)	946
ScaI	AGTACT	1 cut(s)	797
ScrFI	CCNGG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	207
SmoI	CTYRAG	1 cut(s)	207
SphI	GCATGC	2 cut(s)	131, 323
Sse9I	AATT	5 cut(s)	21, 474, 537, 693, 840
SseBI	AGGCCT	1 cut(s)	756
SsiI	CCGC	8 cut(s)	125, 294, 323, 328, 342, 713, 731, 1107
SspMI	CTAG	3 cut(s)	93, 407, 1097
StuI	AGGCCT	1 cut(s)	756
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	443
TaaI	ACNGT	2 cut(s)	115, 857
TaiI	ACGT	3 cut(s)	426, 976, 1052
TaqI	TCGA	1 cut(s)	595
TasI	AATT	5 cut(s)	21, 474, 537, 693, 840
TatI	WGTACW	2 cut(s)	795, 1035
TauI	GCSGC	1 cut(s)	127
TfiI	GAWTC	4 cut(s)	466, 625, 725, 734
Tru1I	TTAA	4 cut(s)	452, 666, 1017, 1111
Tru9I	TTAA	4 cut(s)	452, 666, 1017, 1111
TscAI	CASTG	3 cut(s)	118, 193, 1087
TseI	GCWGC	2 cut(s)	497, 899
TspDTI	ATGAA	6 cut(s)	272, 530, 590, 618, 836, 883
TspRI	CASTG	3 cut(s)	118, 193, 1087
XapI	RAATTY	1 cut(s)	537
XbaI	TCTAGA	1 cut(s)	1096
XceI	RCATGY	2 cut(s)	131, 323
XspI	CTAG	3 cut(s)	93, 407, 1097
ZrmI	AGTACT	1 cut(s)	797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.