Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001147

Physical Location & Seq

Genomic Coordinates Forward (+)

9611053 .. 9614336

Gene Structure 3284 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G27630.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGGAGAGGAGCATCCGAGAAAGCGGTCTAGACAACATTTTGAAGCGGAGGCGAGAAACGTATCGTTGTTTGAATCCCCTCAATGCGAAACCTCCAAGTGGTATTTCAGCAGGGAAGAGATTGAGCGTTTCTCTCCATCCAGAAAAGATGGGATTGATCTTGTGAAGGAGTCGTTTTTACGGTCTTCGTATTGCACCTTCCTGCAAAGACTTGGCATGAAGCTTCATGTGTCCCAGGTTACAATATCATGTGCAATGGTGATGTGCCACAGGTTTTACATGCGCCAATCTCATGCAAAAAATGACTGGCAGACAATAGCGACTTCCAGTCTGTTCCTCGCTTGCAAAGCTGAAGATGAGCCATGTCAACTGTCCAGTGTCGTTGTAGCGTCTTATGAAATAATTTATGAGTGGGATCCTTCTGCCTCAATTAGAATCCATCAAACTGAGTGTTATCATGAATTTAAAGAAATTATTTTGTCCGGGGAAAGTCTTCTGCTGAGCACAAGTGCTTTCCATTTAGACATTGAACTTCCCTACAAACCTCTGGCTGCGGCTTTGAATAGACTGAACGCTTGGCCTGACCTTGCAACAGCTGCATGGAATTTTGTGCATGACTGGATTCGAACCACACTATGCTTGCAGTACAAACCCCATGTTATTGCAACAGCCACTGTGCACCTAGCTGCTACGTTTCAGAATGCGAAAGTAGGCAGCAGGAGAGATTGGTGGTTGGAGTTTGGAGTTACAACTAAGCTATTAAAAGAGGTAATCCAGGAGATGTGCACACTGATAGAAGTGGACAGAAGGAGGAATATGCCACCTCCACCTCCACCTCCAAGAAGAGAGTTAAGTTGGGCAATACCTGCAGCCGTAAAGCCGGTCCATATGGCTAGAGCTTATCCGTTTCACAGCTACCCTTTGCAGTCCTATAGACAGGCTGGCATCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

317

Amino Acids

36.76

Weight (kDa)

8.33

Isoelectric Point (pI)

63.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	49 - 136	1.1e-13	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630
fragaria_vesca	FvH4_2g39390 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420
malus_domestica	MD04G1049900.v1.1 MD06G1050000.v1.1 MD08G1026200.v1.1
prunus_persica	Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1
pyrus_communis	pycom04g04390 pycom06g04230 pycom06g04240 pycom08g02030
rosa_chinensis	RchiOBHm_Chr2g0168341 RchiOBHm_Chr3g0451061 RchiOBHm_Chr6g0301611
rosa_laevigata	RLG00000011239 RLG00000021768 RLG00000025695
rosa_multiflora	Rmu_co8487951.1_g000001 Rmu_sc0000078.1_g000004 Rmu_sc0016462.1_g000004 Rmu_ssc0000452.1_g000012
rosa_roxburghii	Rroxscaffold_2G00083130 Rroxscaffold_7G00166600
rosa_rugosa	Rorug02G0532800 Rorug02G0532900 Rorug02G0533000 Rorug02G0533000 Rorug02G0630800 Rorug06G0307200 Rorug06G0307300
rosa_samantha	Rh2AG602100 Rh2BG615400 Rh2CG583100 Rh2DG625600 Rh3AG033200 Rh3BG033500 Rh3CG032200 Rh3DG033200 Rh6AG420100 Rh6BG426200 Rh6CG433100 Rh6DG419500
rosa_wichuraiana	Rw0G019830 Rw2G049980 Rw3G002440 Rw6G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	874
AciI	CCGC	3 cut(s)	25, 47, 554
AclWI	GGATC	2 cut(s)	410, 423
AcsI	RAATTY	2 cut(s)	461, 604
AcuI	CTGAAG	1 cut(s)	372
AfaI	GTAC	1 cut(s)	647
AfiI	CCNNNNNNNGG	1 cut(s)	99
AgsI	TTSAA	4 cut(s)	44, 74, 530, 562
AhdI	GACNNNNNGTC	1 cut(s)	327
AjnI	CCWGG	2 cut(s)	234, 774
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
AluBI	AGCT	7 cut(s)	223, 350, 596, 686, 757, 899, 915
AluI	AGCT	7 cut(s)	223, 350, 596, 686, 757, 899, 915
Alw21I	GWGCWC	3 cut(s)	506, 681, 788
Alw44I	GTGCAC	2 cut(s)	677, 784
AlwI	GGATC	2 cut(s)	410, 423
AlwNI	CAGNNNCTG	1 cut(s)	674
AoxI	GGCC	1 cut(s)	578
ApaLI	GTGCAC	2 cut(s)	677, 784
ApeKI	GCWGC	5 cut(s)	551, 596, 686, 714, 869
ApoI	RAATTY	2 cut(s)	461, 604
Asp700I	GAANNNNTTC	1 cut(s)	492
AspLEI	GCGC	1 cut(s)	285
AspS9I	GGNCC	1 cut(s)	883
AsuC2I	CCSGG	1 cut(s)	484
AsuHPI	GGTGA	1 cut(s)	271
AsuII	TTCGAA	1 cut(s)	625
AvaII	GGWCC	1 cut(s)	883
BaeGI	GKGCMC	2 cut(s)	681, 788
BamHI	GGATCC	1 cut(s)	415
BarI	GAAGNNNNNNTAC	2 cut(s)	182, 214
BbsI	GAAGAC	2 cut(s)	177, 485
Bbv12I	GWGCWC	3 cut(s)	506, 681, 788
BbvI	GCAGC	5 cut(s)	538, 583, 673, 726, 881
BccI	CCATC	3 cut(s)	143, 145, 447
BceAI	ACGGC	1 cut(s)	857
BciT130I	CCWGG	2 cut(s)	236, 776
BcnI	CCSGG	1 cut(s)	484
BfaI	CTAG	3 cut(s)	30, 683, 894
BfmI	CTRYAG	2 cut(s)	867, 931
BfuAI	ACCTGC	1 cut(s)	874
BisI	GCNGC	6 cut(s)	552, 555, 597, 687, 715, 870
BlpI	GCTNAGC	1 cut(s)	500
BlsI	GCNGC	6 cut(s)	553, 556, 598, 688, 716, 871
Bme1390I	CCNGG	3 cut(s)	236, 484, 776
Bme18I	GGWCC	1 cut(s)	883
BmeRI	GACNNNNNGTC	1 cut(s)	327
BmgT120I	GGNCC	1 cut(s)	883
BmiI	GGNNCC	1 cut(s)	417
BmrFI	CCNGG	3 cut(s)	236, 484, 776
BmsI	GCATC	1 cut(s)	22
BpiI	GAAGAC	2 cut(s)	177, 485
BplI	GAGNNNNNCTC	2 cut(s)	116, 148
Bpu1102I	GCTNAGC	1 cut(s)	500
Bpu14I	TTCGAA	1 cut(s)	625
BpuMI	CCSGG	1 cut(s)	484
BsaJI	CCNNGG	2 cut(s)	234, 483
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
Bse118I	RCCGGY	1 cut(s)	880
Bse1I	ACTGG	4 cut(s)	311, 327, 375, 623
Bse3DI	GCAATG	1 cut(s)	261
BseBI	CCWGG	2 cut(s)	236, 776
BseDI	CCNNGG	2 cut(s)	234, 483
BseGI	GGATG	2 cut(s)	13, 137
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	2 cut(s)	438, 491
BseNI	ACTGG	4 cut(s)	311, 327, 375, 623
BseRI	GAGGAG	1 cut(s)	23
BseSI	GKGCMC	2 cut(s)	681, 788
BseXI	GCAGC	5 cut(s)	538, 583, 673, 726, 881
BshFI	GGCC	1 cut(s)	580
BsiHKAI	GWGCWC	3 cut(s)	506, 681, 788
BsiSI	CCGG	2 cut(s)	483, 881
BslFI	GGGAC	1 cut(s)	217
BslI	CCNNNNNNNGG	1 cut(s)	99
BsmFI	GGGAC	1 cut(s)	217
BsmI	GAATGC	1 cut(s)	706
BsnI	GGCC	1 cut(s)	580
Bsp119I	TTCGAA	1 cut(s)	625
Bsp1286I	GDGCHC	3 cut(s)	506, 681, 788
Bsp143I	GATC	2 cut(s)	157, 415
Bsp1720I	GCTNAGC	1 cut(s)	500
BspACI	CCGC	3 cut(s)	25, 47, 554
BspANI	GGCC	1 cut(s)	580
BspCNI	CTCAG	2 cut(s)	439, 492
BspHI	TCATGA	1 cut(s)	457
BspLI	GGNNCC	1 cut(s)	417
BspMAI	CTGCAG	1 cut(s)	871
BspMI	ACCTGC	1 cut(s)	874
BspPI	GGATC	2 cut(s)	410, 423
BspT104I	TTCGAA	1 cut(s)	625
BsrDI	GCAATG	1 cut(s)	261
BsrFI	RCCGGY	1 cut(s)	880
BsrI	ACTGG	4 cut(s)	311, 327, 375, 623
BssAI	RCCGGY	1 cut(s)	880
BssECI	CCNNGG	2 cut(s)	234, 483
BssMI	GATC	2 cut(s)	157, 415
Bst2UI	CCWGG	2 cut(s)	236, 776
Bst4CI	ACNGT	3 cut(s)	183, 372, 676
Bst6I	CTCTTC	2 cut(s)	111, 838
BstAPI	GCANNNNNTGC	2 cut(s)	596, 866
BstBI	TTCGAA	1 cut(s)	625
BstC8I	GCNNGC	3 cut(s)	343, 641, 943
BstDEI	CTNAG	3 cut(s)	447, 500, 753
BstF5I	GGATG	2 cut(s)	13, 137
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	2 cut(s)	160, 418
BstMBI	GATC	2 cut(s)	157, 415
BstMWI	GCNNNNNNNGC	3 cut(s)	347, 596, 866
BstNI	CCWGG	2 cut(s)	236, 776
BstNSI	RCATGY	1 cut(s)	283
BstSCI	CCNGG	3 cut(s)	234, 482, 774
BstSFI	CTRYAG	2 cut(s)	867, 931
BstSLI	GKGCMC	2 cut(s)	681, 788
BstV1I	GCAGC	5 cut(s)	538, 583, 673, 726, 881
BstV2I	GAAGAC	2 cut(s)	177, 485
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BsuRI	GGCC	1 cut(s)	580
BtsCI	GGATG	2 cut(s)	13, 137
BtsIMutI	CAGTG	3 cut(s)	382, 672, 788
BveI	ACCTGC	1 cut(s)	874
Cac8I	GCNNGC	3 cut(s)	343, 641, 943
CaiI	CAGNNNCTG	1 cut(s)	674
CciI	TCATGA	1 cut(s)	457
CfoI	GCGC	1 cut(s)	285
Cfr10I	RCCGGY	1 cut(s)	880
Cfr13I	GGNCC	1 cut(s)	883
CseI	GACGC	1 cut(s)	378
Csp6I	GTAC	1 cut(s)	646
CviQI	GTAC	1 cut(s)	646
DdeI	CTNAG	3 cut(s)	447, 500, 753
DpnI	GATC	2 cut(s)	159, 417
DpnII	GATC	2 cut(s)	157, 415
DraI	TTTAAA	1 cut(s)	466
DriI	GACNNNNNGTC	1 cut(s)	327
Eam1104I	CTCTTC	2 cut(s)	111, 838
Eam1105I	GACNNNNNGTC	1 cut(s)	327
EarI	CTCTTC	2 cut(s)	111, 838
Eco47I	GGWCC	1 cut(s)	883
Eco57I	CTGAAG	1 cut(s)	372
EcoRII	CCWGG	2 cut(s)	234, 774
FaqI	GGGAC	1 cut(s)	217
FauNDI	CATATG	1 cut(s)	888
Fnu4HI	GCNGC	6 cut(s)	552, 555, 597, 687, 715, 870
FokI	GGATG	1 cut(s)	124
Fsp4HI	GCNGC	6 cut(s)	552, 555, 597, 687, 715, 870
FspBI	CTAG	3 cut(s)	30, 683, 894
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	6 cut(s)	552, 555, 597, 687, 715, 870
HaeIII	GGCC	1 cut(s)	580
HapII	CCGG	2 cut(s)	483, 881
HgaI	GACGC	1 cut(s)	378
HhaI	GCGC	1 cut(s)	285
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HincII	GTYRAC	1 cut(s)	368
HindII	GTYRAC	1 cut(s)	368
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	4 cut(s)	74, 170, 435, 622
HpaII	CCGG	2 cut(s)	483, 881
HphI	GGTGA	1 cut(s)	271
Hpy166II	GTNNAC	4 cut(s)	368, 679, 786, 802
Hpy188I	TCNGA	2 cut(s)	18, 699
Hpy188III	TCNNGA	3 cut(s)	30, 141, 458
Hpy8I	GTNNAC	4 cut(s)	368, 679, 786, 802
HpyAV	CCTTC	4 cut(s)	160, 208, 429, 801
HpyCH4III	ACNGT	3 cut(s)	183, 372, 676
HpyCH4IV	ACGT	2 cut(s)	60, 692
HpyF10VI	GCNNNNNNNGC	3 cut(s)	347, 596, 866
HpyF3I	CTNAG	3 cut(s)	447, 500, 753
HpySE526I	ACGT	2 cut(s)	60, 692
HspAI	GCGC	1 cut(s)	283
Kzo9I	GATC	2 cut(s)	157, 415
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	5 cut(s)	538, 583, 673, 726, 881
LweI	GCATC	1 cut(s)	22
MaeI	CTAG	3 cut(s)	30, 683, 894
MaeII	ACGT	2 cut(s)	60, 692
MaeIII	GTNAC	2 cut(s)	238, 745
MalI	GATC	2 cut(s)	159, 417
MboI	GATC	2 cut(s)	157, 415
MboII	GAAGA	5 cut(s)	128, 177, 365, 485, 855
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	3 cut(s)	506, 681, 788
MluCI	AATT	5 cut(s)	402, 429, 461, 471, 604
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	1 cut(s)	714
MroXI	GAANNNNTTC	1 cut(s)	492
MseI	TTAA	3 cut(s)	465, 761, 851
MspA1I	CMGCKG	1 cut(s)	596
MspI	CCGG	2 cut(s)	483, 881
MspR9I	CCNGG	3 cut(s)	236, 484, 776
Mva1269I	GAATGC	1 cut(s)	706
MvaI	CCWGG	2 cut(s)	236, 776
MwoI	GCNNNNNNNGC	3 cut(s)	347, 596, 866
NciI	CCSGG	1 cut(s)	484
NdeI	CATATG	1 cut(s)	888
NdeII	GATC	2 cut(s)	157, 415
NlaIV	GGNNCC	1 cut(s)	417
NspI	RCATGY	1 cut(s)	283
NspV	TTCGAA	1 cut(s)	625
PagI	TCATGA	1 cut(s)	457
PctI	GAATGC	1 cut(s)	706
PdmI	GAANNNNTTC	1 cut(s)	492
PfeI	GAWTC	3 cut(s)	74, 435, 622
PfoI	TCCNGGA	1 cut(s)	774
PkrI	GCNGC	6 cut(s)	553, 556, 598, 688, 716, 871
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
Psp6I	CCWGG	2 cut(s)	234, 774
PspGI	CCWGG	2 cut(s)	234, 774
PspN4I	GGNNCC	1 cut(s)	417
PspPI	GGNCC	1 cut(s)	883
PstI	CTGCAG	1 cut(s)	871
PstNI	CAGNNNCTG	1 cut(s)	674
PsuI	RGATCY	1 cut(s)	415
PvuII	CAGCTG	1 cut(s)	596
RsaI	GTAC	1 cut(s)	647
RsaNI	GTAC	1 cut(s)	646
SaqAI	TTAA	3 cut(s)	465, 761, 851
SatI	GCNGC	6 cut(s)	552, 555, 597, 687, 715, 870
Sau3AI	GATC	2 cut(s)	157, 415
Sau96I	GGNCC	1 cut(s)	883
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	3 cut(s)	236, 484, 776
SduI	GDGCHC	3 cut(s)	506, 681, 788
SfaNI	GCATC	1 cut(s)	22
SfcI	CTRYAG	2 cut(s)	867, 931
SfuI	TTCGAA	1 cut(s)	625
SinI	GGWCC	1 cut(s)	883
Sse9I	AATT	5 cut(s)	402, 429, 461, 471, 604
SsiI	CCGC	3 cut(s)	25, 47, 554
SspMI	CTAG	3 cut(s)	30, 683, 894
StyD4I	CCNGG	3 cut(s)	234, 482, 774
TaaI	ACNGT	3 cut(s)	183, 372, 676
TaiI	ACGT	2 cut(s)	63, 695
TaqI	TCGA	1 cut(s)	625
TasI	AATT	5 cut(s)	402, 429, 461, 471, 604
TatI	WGTACW	1 cut(s)	645
TauI	GCSGC	1 cut(s)	557
TfiI	GAWTC	3 cut(s)	74, 435, 622
Tru1I	TTAA	3 cut(s)	465, 761, 851
Tru9I	TTAA	3 cut(s)	465, 761, 851
TscAI	CASTG	3 cut(s)	382, 679, 795
TseI	GCWGC	5 cut(s)	551, 596, 686, 714, 869
TspDTI	ATGAA	4 cut(s)	215, 233, 411, 474
TspGWI	ACGGA	1 cut(s)	894
TspRI	CASTG	3 cut(s)	382, 679, 795
VneI	GTGCAC	2 cut(s)	677, 784
VpaK11BI	GGWCC	1 cut(s)	883
XapI	RAATTY	2 cut(s)	461, 604
XbaI	TCTAGA	1 cut(s)	29
XceI	RCATGY	1 cut(s)	283
XmnI	GAANNNNTTC	1 cut(s)	492
XspI	CTAG	3 cut(s)	30, 683, 894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.