Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001147

Physical Location & Seq

Genomic Coordinates Reverse (-)

5891134 .. 5891457

Gene Structure 324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1049900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAAAGAGTCGGAATTGCGGAGGTCTTACTGCTTGTTTCTGAGGGAGTTTGGGACGAAATTGAAGGTGGGTAGGGTTACGATTTTGACGGCGATGATACTGTGCCACCAATTTTACATGCGGCAATCTCATGGCAAGAACGATTGGAAGATTGTTGCAACTTCAAGCATGCTTCTTGCTTGCAAATTAGTCAACGAAGTTAGGTTTTTGAATGACATTGTTTTCGTGGGGTACGAGATTGGGGAAAATTCGAATCGAGTTAAAAGAGTAGTAGTGGTGGTAGTATTAGGTAGAGAAAGTTTTTCAGGAAGTAGAAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

108

Amino Acids

12.35

Weight (kDa)

9.95

Isoelectric Point (pI)

47.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	4 - 76	2.7e-10	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630
fragaria_vesca	FvH4_2g39390 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420
malus_domestica	MD04G1049900.v1.1 MD06G1050000.v1.1 MD08G1026200.v1.1
prunus_persica	Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1
pyrus_communis	pycom04g04390 pycom06g04230 pycom06g04240 pycom08g02030
rosa_chinensis	RchiOBHm_Chr2g0168341 RchiOBHm_Chr3g0451061 RchiOBHm_Chr6g0301611
rosa_laevigata	RLG00000011239 RLG00000021768 RLG00000025695
rosa_multiflora	Rmu_co8487951.1_g000001 Rmu_sc0000078.1_g000004 Rmu_sc0016462.1_g000004 Rmu_ssc0000452.1_g000012
rosa_roxburghii	Rroxscaffold_2G00083130 Rroxscaffold_7G00166600
rosa_rugosa	Rorug02G0532800 Rorug02G0532900 Rorug02G0533000 Rorug02G0533000 Rorug02G0630800 Rorug06G0307200 Rorug06G0307300
rosa_samantha	Rh2AG602100 Rh2BG615400 Rh2CG583100 Rh2DG625600 Rh3AG033200 Rh3BG033500 Rh3CG032200 Rh3DG033200 Rh6AG420100 Rh6BG426200 Rh6CG433100 Rh6DG419500
rosa_wichuraiana	Rw0G019830 Rw2G049980 Rw3G002440 Rw6G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	19, 121
AcsI	RAATTY	1 cut(s)	247
AfaI	GTAC	1 cut(s)	233
AgsI	TTSAA	3 cut(s)	64, 165, 211
ApoI	RAATTY	1 cut(s)	247
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
AsuII	TTCGAA	1 cut(s)	251
BceAI	ACGGC	1 cut(s)	105
BisI	GCNGC	1 cut(s)	122
BlsI	GCNGC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	251
BseMII	CTCAG	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	67
Bsp119I	TTCGAA	1 cut(s)	251
BspACI	CCGC	2 cut(s)	19, 121
BspCNI	CTCAG	1 cut(s)	33
BspT104I	TTCGAA	1 cut(s)	251
Bst4CI	ACNGT	1 cut(s)	102
BstBI	TTCGAA	1 cut(s)	251
BstC8I	GCNNGC	2 cut(s)	170, 181
BstDEI	CTNAG	1 cut(s)	41
BstNSI	RCATGY	2 cut(s)	121, 172
BtgZI	GCGATG	1 cut(s)	107
Cac8I	GCNNGC	2 cut(s)	170, 181
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	3 cut(s)	118, 131, 169
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	1 cut(s)	41
FaeI	CATG	3 cut(s)	121, 134, 172
FaiI	YATR	3 cut(s)	119, 132, 170
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	3 cut(s)	117, 130, 168
Fnu4HI	GCNGC	1 cut(s)	122
Fsp4HI	GCNGC	1 cut(s)	122
GluI	GCNGC	1 cut(s)	122
Hin1II	CATG	3 cut(s)	121, 134, 172
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	2 cut(s)	8, 253
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	2 cut(s)	13, 42
Hpy188III	TCNNGA	1 cut(s)	306
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	102
HpyCH4V	TGCA	2 cut(s)	158, 183
HpyF3I	CTNAG	1 cut(s)	41
Hsp92II	CATG	3 cut(s)	121, 134, 172
LpnPI	CCDG	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	76
MboII	GAAGA	1 cut(s)	160
MluCI	AATT	5 cut(s)	14, 59, 110, 185, 247
MlyI	GAGTC	1 cut(s)	17
MnlI	CCTC	2 cut(s)	15, 36
MseI	TTAA	1 cut(s)	261
NlaIII	CATG	3 cut(s)	121, 134, 172
NspI	RCATGY	2 cut(s)	121, 172
NspV	TTCGAA	1 cut(s)	251
PaeI	GCATGC	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	253
PkrI	GCNGC	1 cut(s)	123
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	1 cut(s)	122
SchI	GAGTC	1 cut(s)	17
SetI	ASST	4 cut(s)	26, 69, 206, 292
SfuI	TTCGAA	1 cut(s)	251
SphI	GCATGC	1 cut(s)	172
Sse9I	AATT	5 cut(s)	14, 59, 110, 185, 247
SsiI	CCGC	2 cut(s)	19, 121
TaaI	ACNGT	1 cut(s)	102
TaqI	TCGA	2 cut(s)	251, 256
TasI	AATT	5 cut(s)	14, 59, 110, 185, 247
TauI	GCSGC	1 cut(s)	124
TfiI	GAWTC	1 cut(s)	253
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	247
XceI	RCATGY	2 cut(s)	121, 172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.