Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001147

Physical Location & Seq

Genomic Coordinates Reverse (-)

77522228 .. 77524859

Gene Structure 2632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G049980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGTGCACACCAGAAGAAGAACCACAGTGCCGTGGGTGGTATTTTACGAGGCAGGAGATAGAACATTGGTCTCCATCTCGGAGGGATGGGATTAGCAGGAAGAAAGAGACAGAATTGCGCGAGTTATATTGCTCGTATCTTAAAGAGCTTGGCATGAGGCTTGAATTGCCTCAGGTGACAATAGCATGTGCAATGATGTTGTGCCACCGATTTTCATGCGTCAATCTCATGCTAAGAATGATTGGAAGGTACAGATTTTGTACAATTGCAACTGTAAGCATCTTTGTTGCTTGCAAAATACAAGATACAAGGCGCCCTCTGAATGATGTTCTTCGTGAGGCATCTGATATGCTTCACAAATCGGATGCTTCTGCATTACCATATGTCAGACGAAAAGAAGTCTTCAAGGAATTGATTTTAGTTGCAGAGATACTTCTGTTGTCCACAATTGGTTTTGATTTTGAGATGAAGCTTCCGTACATGTCACTTGTTGAAGCTTTAAGGAGATTAGATCTTTTCTCTGCCCTTGCTGAGAGGGCATGGAATTATGTTAATGATTGCCTTTGCACATCATTGTGCTTGCAGTATGAGCCCAACTACATTGCAGCTGGTTCACTGTTTCTTGCTGCAGAAATAGAAAAAGTCAAACTTCCTAAAGATGAAGGAAAAGTTTGGTGGGCGGAATTTAATGTTTCGCCGAAACAGTTAGATGAAGGCAAGCAGAAAACAAGCTCCATCACCCAAAATGGTGGGAAGGGAAATCAGTCTGAAACTTTAATAAGAAGGCCAAGTGATCCTAGTAGCTCTCAATCATGTGTTTCAAGTGAAGCAGTGGTTGATTGTCATTTTAGGCACAGCACCTTGGTGGAAGAGGACAGAGGACTAGGAGAGTCTATTATGTCTTGCGGCCAAAATGTTGTAGAAGGTGAAAACTGTACCGCCACGAAGGAGCTTTGTCATGTCACACATGTGATAGTGGCAGTCCAAGTGGCAATGTTGAGGATGGTGGTGCTGAGATCAAACCTGTTGGAGGGGAACCAGATTATCAGAACGATAATGCGATTGACATTGACCGGATTAGAGATAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

363

Amino Acids

41.32

Weight (kDa)

6.42

Isoelectric Point (pI)

60.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	15 - 154	5.1e-10	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630
fragaria_vesca	FvH4_2g39390 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420
malus_domestica	MD04G1049900.v1.1 MD06G1050000.v1.1 MD08G1026200.v1.1
prunus_persica	Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1
pyrus_communis	pycom04g04390 pycom06g04230 pycom06g04240 pycom08g02030
rosa_chinensis	RchiOBHm_Chr2g0168341 RchiOBHm_Chr3g0451061 RchiOBHm_Chr6g0301611
rosa_laevigata	RLG00000011239 RLG00000021768 RLG00000025695
rosa_multiflora	Rmu_co8487951.1_g000001 Rmu_sc0000078.1_g000004 Rmu_sc0016462.1_g000004 Rmu_ssc0000452.1_g000012
rosa_roxburghii	Rroxscaffold_2G00083130 Rroxscaffold_7G00166600
rosa_rugosa	Rorug02G0532800 Rorug02G0532900 Rorug02G0533000 Rorug02G0533000 Rorug02G0630800 Rorug06G0307200 Rorug06G0307300
rosa_samantha	Rh2AG602100 Rh2BG615400 Rh2CG583100 Rh2DG625600 Rh3AG033200 Rh3BG033500 Rh3CG032200 Rh3DG033200 Rh6AG420100 Rh6BG426200 Rh6CG433100 Rh6DG419500
rosa_wichuraiana	Rw0G019830 Rw2G049980 Rw3G002440 Rw6G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	312
AccII	CGCG	1 cut(s)	120
AciI	CCGC	3 cut(s)	680, 906, 939
AclWI	GGATC	1 cut(s)	788
AcoI	YGGCCR	1 cut(s)	907
AcsI	RAATTY	1 cut(s)	683
AcyI	GRCGYC	1 cut(s)	313
AfaI	GTAC	4 cut(s)	251, 262, 479, 937
AfiI	CCNNNNNNNGG	1 cut(s)	1030
AflIII	ACRYGT	2 cut(s)	480, 967
AgsI	TTSAA	4 cut(s)	164, 406, 494, 822
AleI	CACNNNNGTG	2 cut(s)	863, 968
AluBI	AGCT	7 cut(s)	148, 472, 497, 608, 732, 804, 952
AluI	AGCT	7 cut(s)	148, 472, 497, 608, 732, 804, 952
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	75, 101
Alw44I	GTGCAC	1 cut(s)	4
AlwI	GGATC	1 cut(s)	788
AoxI	GGCC	2 cut(s)	785, 907
ApaLI	GTGCAC	1 cut(s)	4
ApeKI	GCWGC	2 cut(s)	605, 626
ApoI	RAATTY	1 cut(s)	683
AspLEI	GCGC	2 cut(s)	120, 315
AsuHPI	GGTGA	3 cut(s)	187, 730, 938
AxyI	CCTNAGG	1 cut(s)	171
BaeGI	GKGCMC	1 cut(s)	8
BaeI	ACNNNNGTAYC	2 cut(s)	422, 455
BanI	GGYRCC	1 cut(s)	312
BanII	GRGCYC	1 cut(s)	594
BarI	GAAGNNNNNNTAC	2 cut(s)	461, 493
BbsI	GAAGAC	1 cut(s)	394
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	613, 617
BccI	CCATC	4 cut(s)	80, 82, 743, 997
BceAI	ACGGC	1 cut(s)	15
BcgI	CGANNNNNNTGC	2 cut(s)	198, 232
BcoDI	GTCTC	2 cut(s)	75, 101
BfaI	CTAG	2 cut(s)	798, 884
BfmI	CTRYAG	1 cut(s)	627
BfoI	RGCGCY	1 cut(s)	316
BglII	AGATCT	1 cut(s)	511
BisI	GCNGC	3 cut(s)	606, 627, 907
BlsI	GCNGC	3 cut(s)	607, 628, 908
BmiI	GGNNCC	2 cut(s)	314, 1037
BmsI	GCATC	3 cut(s)	288, 350, 355
BpiI	GAAGAC	1 cut(s)	394
BsaHI	GRCGYC	1 cut(s)	313
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	31, 861
BsaWI	WCCGGW	1 cut(s)	1073
Bsc4I	CCNNNNNNNGG	1 cut(s)	1030
Bse21I	CCTNAGG	1 cut(s)	171
Bse3DI	GCAATG	3 cut(s)	198, 600, 999
BseDI	CCNNGG	2 cut(s)	31, 861
BseGI	GGATG	3 cut(s)	91, 370, 1008
BseLI	CCNNNNNNNGG	1 cut(s)	1030
BseMI	GCAATG	3 cut(s)	198, 600, 999
BseMII	CTCAG	3 cut(s)	185, 522, 1004
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	2 cut(s)	613, 617
Bsh1236I	CGCG	1 cut(s)	120
BshFI	GGCC	2 cut(s)	787, 909
BshNI	GGYRCC	1 cut(s)	312
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	1074
BslI	CCNNNNNNNGG	1 cut(s)	1030
BsmAI	GTCTC	2 cut(s)	75, 101
BsnI	GGCC	2 cut(s)	787, 909
Bso31I	GGTCTC	1 cut(s)	75
Bsp1286I	GDGCHC	2 cut(s)	8, 594
Bsp1407I	TGTACA	1 cut(s)	260
Bsp143I	GATC	3 cut(s)	511, 793, 1016
BspACI	CCGC	3 cut(s)	680, 906, 939
BspANI	GGCC	2 cut(s)	787, 909
BspCNI	CTCAG	3 cut(s)	184, 523, 1005
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	2 cut(s)	314, 1037
BspMAI	CTGCAG	1 cut(s)	631
BspPI	GGATC	1 cut(s)	788
BspT107I	GGYRCC	1 cut(s)	312
BspTNI	GGTCTC	1 cut(s)	75
BsrDI	GCAATG	3 cut(s)	198, 600, 999
BsrGI	TGTACA	1 cut(s)	260
BssECI	CCNNGG	2 cut(s)	31, 861
BssMI	GATC	3 cut(s)	511, 793, 1016
BssNI	GRCGYC	1 cut(s)	313
BssT1I	CCWWGG	1 cut(s)	861
Bst4CI	ACNGT	5 cut(s)	27, 274, 618, 705, 935
Bst6I	CTCTTC	1 cut(s)	864
BstACI	GRCGYC	1 cut(s)	313
BstAUI	TGTACA	1 cut(s)	260
BstC8I	GCNNGC	3 cut(s)	292, 581, 719
BstDEI	CTNAG	4 cut(s)	171, 233, 531, 1013
BstDSI	CCRYGG	1 cut(s)	31
BstENI	CCTNNNNNAGG	1 cut(s)	1028
BstF5I	GGATG	3 cut(s)	91, 370, 1008
BstFNI	CGCG	1 cut(s)	120
BstH2I	RGCGCY	1 cut(s)	316
BstHHI	GCGC	2 cut(s)	120, 315
BstKTI	GATC	3 cut(s)	514, 796, 1019
BstMAI	GTCTC	2 cut(s)	75, 101
BstMBI	GATC	3 cut(s)	511, 793, 1016
BstMWI	GCNNNNNNNGC	3 cut(s)	166, 536, 589
BstNSI	RCATGY	3 cut(s)	189, 484, 971
BstSFI	CTRYAG	1 cut(s)	627
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	2 cut(s)	613, 617
BstV2I	GAAGAC	1 cut(s)	394
BstX2I	RGATCY	1 cut(s)	511
BstXI	CCANNNNNNTGG	1 cut(s)	749
BstYI	RGATCY	1 cut(s)	511
Bsu36I	CCTNAGG	1 cut(s)	171
BsuRI	GGCC	2 cut(s)	787, 909
BtgI	CCRYGG	1 cut(s)	31
BtsCI	GGATG	3 cut(s)	91, 370, 1008
BtsI	GCAGTG	1 cut(s)	837
BtsIMutI	CAGTG	3 cut(s)	32, 614, 837
Cac8I	GCNNGC	3 cut(s)	292, 581, 719
CfoI	GCGC	2 cut(s)	120, 315
CseI	GACGC	1 cut(s)	208
Csp6I	GTAC	4 cut(s)	250, 261, 478, 936
CviAII	CATG	9 cut(s)	154, 186, 216, 229, 481, 540, 813, 959, 968
CviQI	GTAC	4 cut(s)	250, 261, 478, 936
DdeI	CTNAG	4 cut(s)	171, 233, 531, 1013
DinI	GGCGCC	1 cut(s)	314
DpnI	GATC	3 cut(s)	513, 795, 1018
DpnII	GATC	3 cut(s)	511, 793, 1016
EaeI	YGGCCR	1 cut(s)	907
Eam1104I	CTCTTC	1 cut(s)	864
EarI	CTCTTC	1 cut(s)	864
EciI	GGCGGA	1 cut(s)	695
Eco130I	CCWWGG	1 cut(s)	861
Eco24I	GRGCYC	1 cut(s)	594
Eco31I	GGTCTC	1 cut(s)	75
Eco81I	CCTNAGG	1 cut(s)	171
EcoNI	CCTNNNNNAGG	1 cut(s)	1028
EcoT14I	CCWWGG	1 cut(s)	861
EcoT38I	GRGCYC	1 cut(s)	594
EgeI	GGCGCC	1 cut(s)	314
EheI	GGCGCC	1 cut(s)	314
ErhI	CCWWGG	1 cut(s)	861
FaeI	CATG	9 cut(s)	157, 189, 219, 232, 484, 543, 816, 962, 971
FalI	AAGNNNNNCTT	2 cut(s)	633, 665
FatI	CATG	9 cut(s)	153, 185, 215, 228, 480, 539, 812, 958, 967
FauNDI	CATATG	1 cut(s)	382
Fnu4HI	GCNGC	3 cut(s)	606, 627, 907
FokI	GGATG	3 cut(s)	98, 377, 1015
FriOI	GRGCYC	1 cut(s)	594
Fsp4HI	GCNGC	3 cut(s)	606, 627, 907
FspBI	CTAG	2 cut(s)	798, 884
GlaI	GCGC	2 cut(s)	119, 314
GluI	GCNGC	3 cut(s)	606, 627, 907
HaeII	RGCGCY	1 cut(s)	316
HaeIII	GGCC	2 cut(s)	787, 909
HapII	CCGG	1 cut(s)	1074
HgaI	GACGC	1 cut(s)	208
HhaI	GCGC	2 cut(s)	120, 315
Hin1I	GRCGYC	1 cut(s)	313
Hin1II	CATG	9 cut(s)	157, 189, 219, 232, 484, 543, 816, 962, 971
Hin6I	GCGC	2 cut(s)	118, 313
HinP1I	GCGC	2 cut(s)	118, 313
HindIII	AAGCTT	2 cut(s)	470, 495
HinfI	GANTC	1 cut(s)	890
HpaII	CCGG	1 cut(s)	1074
HphI	GGTGA	3 cut(s)	187, 730, 938
Hpy166II	GTNNAC	3 cut(s)	6, 444, 614
Hpy188I	TCNGA	7 cut(s)	81, 321, 346, 364, 389, 769, 1049
Hpy188III	TCNNGA	1 cut(s)	335
Hpy8I	GTNNAC	3 cut(s)	6, 444, 614
HpyAV	CCTTC	7 cut(s)	240, 656, 707, 748, 777, 917, 940
HpyCH4III	ACNGT	5 cut(s)	27, 274, 618, 705, 935
HpyF10VI	GCNNNNNNNGC	3 cut(s)	166, 536, 589
HpyF3I	CTNAG	4 cut(s)	171, 233, 531, 1013
Hsp92I	GRCGYC	1 cut(s)	313
Hsp92II	CATG	9 cut(s)	157, 189, 219, 232, 484, 543, 816, 962, 971
HspAI	GCGC	2 cut(s)	118, 313
KasI	GGCGCC	1 cut(s)	312
Kzo9I	GATC	3 cut(s)	511, 793, 1016
LmnI	GCTCC	2 cut(s)	737, 949
LpnPI	CCDG	8 cut(s)	24, 38, 82, 158, 594, 1037, 1052, 1087
Lsp1109I	GCAGC	2 cut(s)	613, 617
LweI	GCATC	3 cut(s)	288, 350, 355
MaeI	CTAG	2 cut(s)	798, 884
MaeIII	GTNAC	3 cut(s)	175, 483, 961
MalI	GATC	3 cut(s)	513, 795, 1018
MboI	GATC	3 cut(s)	511, 793, 1016
MboII	GAAGA	6 cut(s)	26, 29, 112, 323, 394, 881
MfeI	CAATTG	2 cut(s)	264, 447
MflI	RGATCY	1 cut(s)	511
MhlI	GDGCHC	2 cut(s)	8, 594
MluCI	AATT	8 cut(s)	113, 164, 264, 410, 447, 544, 683, 1087
Mly113I	GGCGCC	1 cut(s)	313
MlyI	GAGTC	1 cut(s)	899
MmeI	TCCRAC	1 cut(s)	1008
MseI	TTAA	5 cut(s)	141, 500, 552, 687, 776
MslI	CAYNNNNRTG	3 cut(s)	574, 863, 968
MspA1I	CMGCKG	1 cut(s)	608
MspI	CCGG	1 cut(s)	1074
MunI	CAATTG	2 cut(s)	264, 447
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	3 cut(s)	166, 536, 589
NarI	GGCGCC	1 cut(s)	313
NdeI	CATATG	1 cut(s)	382
NdeII	GATC	3 cut(s)	511, 793, 1016
NlaIII	CATG	9 cut(s)	157, 189, 219, 232, 484, 543, 816, 962, 971
NlaIV	GGNNCC	2 cut(s)	314, 1037
NmuCI	GTSAC	3 cut(s)	175, 483, 961
NspI	RCATGY	3 cut(s)	189, 484, 971
OliI	CACNNNNGTG	2 cut(s)	863, 968
PciI	ACATGT	2 cut(s)	480, 967
PkrI	GCNGC	3 cut(s)	607, 628, 908
PleI	GAGTC	1 cut(s)	898
PluTI	GGCGCC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	898
PscI	ACATGT	2 cut(s)	480, 967
PspN4I	GGNNCC	2 cut(s)	314, 1037
PstI	CTGCAG	1 cut(s)	631
PsuI	RGATCY	1 cut(s)	511
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	4 cut(s)	251, 262, 479, 937
RsaNI	GTAC	4 cut(s)	250, 261, 478, 936
RseI	CAYNNNNRTG	3 cut(s)	574, 863, 968
SaqAI	TTAA	5 cut(s)	141, 500, 552, 687, 776
SatI	GCNGC	3 cut(s)	606, 627, 907
Sau3AI	GATC	3 cut(s)	511, 793, 1016
SchI	GAGTC	1 cut(s)	899
SduI	GDGCHC	2 cut(s)	8, 594
SfaNI	GCATC	3 cut(s)	288, 350, 355
SfcI	CTRYAG	1 cut(s)	627
SfoI	GGCGCC	1 cut(s)	314
SmiMI	CAYNNNNRTG	3 cut(s)	574, 863, 968
Sse9I	AATT	8 cut(s)	113, 164, 264, 410, 447, 544, 683, 1087
SsiI	CCGC	3 cut(s)	680, 906, 939
SspDI	GGCGCC	1 cut(s)	312
SspMI	CTAG	2 cut(s)	798, 884
StyI	CCWWGG	1 cut(s)	861
TaaI	ACNGT	5 cut(s)	27, 274, 618, 705, 935
TasI	AATT	8 cut(s)	113, 164, 264, 410, 447, 544, 683, 1087
TatI	WGTACW	1 cut(s)	260
TauI	GCSGC	1 cut(s)	909
Tru1I	TTAA	5 cut(s)	141, 500, 552, 687, 776
Tru9I	TTAA	5 cut(s)	141, 500, 552, 687, 776
TscAI	CASTG	3 cut(s)	32, 621, 837
TseFI	GTSAC	3 cut(s)	175, 483, 961
TseI	GCWGC	2 cut(s)	605, 626
Tsp45I	GTSAC	3 cut(s)	175, 483, 961
TspDTI	ATGAA	4 cut(s)	204, 482, 675, 726
TspGWI	ACGGA	1 cut(s)	465
TspRI	CASTG	3 cut(s)	32, 621, 837
VneI	GTGCAC	1 cut(s)	4
XagI	CCTNNNNNAGG	1 cut(s)	1028
XapI	RAATTY	1 cut(s)	683
XceI	RCATGY	3 cut(s)	189, 484, 971
XspI	CTAG	2 cut(s)	798, 884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.