Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016462.1

Orthogroup ID

OG0001147

Physical Location & Seq

Genomic Coordinates Forward (+)

4745 .. 8151

Gene Structure 3407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016462.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

atgcccaacaccctttcccgccaaaacgagccgaagcagttttcttcctctccgctcaaagatcaaaccctaaacctccaaagccccctttactcggatcaccctcctccagacccgaaacatcgacccgatttggaaacccgtcccctattgggacccgatttggagattcggagctccaggaaattgcggcggtcctactcgttgttgcttcaagagattgggacgaagcttaaagtgcctcatctgacaattgcaactgcaaagatgttgtgccactgcttttatatgcatcagtctcatgctaagaatgattggcagactattgcaactgcttgcatccttgtcgcctgcaaagtggacgacgcaccacactttctgagtgatgttgcttttgtggcatatgagatagcacacaagtttaatccgtctgccttagagagtatcagacaaagagaatttttcagaaagcaaaaggagttgattgtagtggcggagaaagctctattgacaacaattgactttgatcttgacattcagcttacatacaagacacttgttgtggttctaaagagattaaatatccctgacctcgctaaggttgctaaggtggcatggcatcttattgatcagtggcttcaaacatcactgtgcctgcagtacaagccccattacattgctgctggttcaattgctcttgttgctagaattctagaagtcaaactacctacagagaagggaaaaatttggtggttggagattgatgtggcgccggaacaattagatgaaggttacaactatgctactacgaaggaagctttaccaccatctcaggtaagtgatagtggtcctgagattaaagcatttgtcaccttgctccggtcgtccctctggcatcctcttgcggcgattctaggtggtggcggcgatagaaggcggcgaaatttgaggaaatcggacccgaacggttctctgatctccgacgtcggcgaagcttcaaaccaggtttggggagctcgtagcagcctcctggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

345

Amino Acids

38.88

Weight (kDa)

8.82

Isoelectric Point (pI)

63.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630
fragaria_vesca	FvH4_2g39390 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420
malus_domestica	MD04G1049900.v1.1 MD06G1050000.v1.1 MD08G1026200.v1.1
prunus_persica	Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1
pyrus_communis	pycom04g04390 pycom06g04230 pycom06g04240 pycom08g02030
rosa_chinensis	RchiOBHm_Chr2g0168341 RchiOBHm_Chr3g0451061 RchiOBHm_Chr6g0301611
rosa_laevigata	RLG00000011239 RLG00000021768 RLG00000025695
rosa_multiflora	Rmu_co8487951.1_g000001 Rmu_sc0000078.1_g000004 Rmu_sc0016462.1_g000004 Rmu_ssc0000452.1_g000012
rosa_roxburghii	Rroxscaffold_2G00083130 Rroxscaffold_7G00166600
rosa_rugosa	Rorug02G0532800 Rorug02G0532900 Rorug02G0533000 Rorug02G0533000 Rorug02G0630800 Rorug06G0307200 Rorug06G0307300
rosa_samantha	Rh2AG602100 Rh2BG615400 Rh2CG583100 Rh2DG625600 Rh3AG033200 Rh3BG033500 Rh3CG032200 Rh3DG033200 Rh6AG420100 Rh6BG426200 Rh6CG433100 Rh6DG419500
rosa_wichuraiana	Rw0G019830 Rw2G049980 Rw3G002440 Rw6G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	987
AccB1I	GGYRCC	1 cut(s)	769
AccBSI	CCGCTC	1 cut(s)	55
AciI	CCGC	8 cut(s)	19, 53, 190, 193, 494, 905, 924, 937
AclWI	GGATC	1 cut(s)	105
AcsI	RAATTY	4 cut(s)	458, 708, 744, 943
AcyI	GRCGYC	2 cut(s)	770, 984
AfaI	GTAC	1 cut(s)	662
AfiI	CCNNNNNNNGG	5 cut(s)	94, 152, 598, 879, 1009
AgsI	TTSAA	4 cut(s)	215, 641, 690, 999
AjnI	CCWGG	3 cut(s)	179, 1002, 1029
AluBI	AGCT	7 cut(s)	177, 232, 503, 541, 818, 995, 1016
AluI	AGCT	7 cut(s)	177, 232, 503, 541, 818, 995, 1016
Alw21I	GWGCWC	2 cut(s)	179, 1018
Alw26I	GTCTC	1 cut(s)	303
AlwI	GGATC	1 cut(s)	105
ApeKI	GCWGC	2 cut(s)	680, 1023
ApoI	RAATTY	4 cut(s)	458, 708, 744, 943
AspLEI	GCGC	1 cut(s)	772
AspS9I	GGNCC	4 cut(s)	155, 195, 848, 958
AsuHPI	GGTGA	2 cut(s)	92, 862
AvaII	GGWCC	4 cut(s)	155, 195, 848, 958
BanI	GGYRCC	1 cut(s)	769
BanII	GRGCYC	2 cut(s)	179, 1018
BarI	GAAGNNNNNNTAC	2 cut(s)	708, 740
Bbv12I	GWGCWC	2 cut(s)	179, 1018
BbvI	GCAGC	1 cut(s)	667
BccI	CCATC	1 cut(s)	835
BcgI	CGANNNNNNTGC	2 cut(s)	328, 362
BciT130I	CCWGG	3 cut(s)	181, 1004, 1031
BclI	TGATCA	1 cut(s)	628
BcoDI	GTCTC	1 cut(s)	303
BfaI	CTAG	3 cut(s)	705, 713, 914
BfmI	CTRYAG	2 cut(s)	656, 729
BfoI	RGCGCY	1 cut(s)	773
BisI	GCNGC	6 cut(s)	191, 681, 906, 925, 938, 1024
BlsI	GCNGC	6 cut(s)	192, 682, 907, 926, 939, 1025
Bme1390I	CCNGG	3 cut(s)	181, 1004, 1031
Bme18I	GGWCC	4 cut(s)	155, 195, 848, 958
BmgT120I	GGNCC	4 cut(s)	155, 195, 848, 958
BmiI	GGNNCC	4 cut(s)	156, 157, 771, 960
BmrFI	CCNGG	3 cut(s)	181, 1004, 1031
BmsI	GCATC	4 cut(s)	301, 348, 628, 904
BpmI	CTGGAG	2 cut(s)	93, 163
Bpu10I	CCTNAGC	2 cut(s)	597, 606
BsaHI	GRCGYC	2 cut(s)	770, 984
BsaWI	WCCGGW	1 cut(s)	879
Bsc4I	CCNNNNNNNGG	5 cut(s)	94, 152, 598, 879, 1009
Bse3DI	GCAATG	1 cut(s)	675
BseBI	CCWGG	3 cut(s)	181, 1004, 1031
BseGI	GGATG	2 cut(s)	339, 895
BseLI	CCNNNNNNNGG	5 cut(s)	94, 152, 598, 879, 1009
BseMI	GCAATG	1 cut(s)	675
BseMII	CTCAG	3 cut(s)	371, 843, 845
BseRI	GAGGAG	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	667
Bsh1285I	CGRYCG	1 cut(s)	884
BshNI	GGYRCC	1 cut(s)	769
BsiEI	CGRYCG	1 cut(s)	884
BsiHKAI	GWGCWC	2 cut(s)	179, 1018
BsiSI	CCGG	2 cut(s)	773, 880
BslFI	GGGAC	4 cut(s)	129, 168, 238, 871
BslI	CCNNNNNNNGG	5 cut(s)	94, 152, 598, 879, 1009
BsmAI	GTCTC	1 cut(s)	303
BsmFI	GGGAC	4 cut(s)	129, 168, 238, 871
Bsp1286I	GDGCHC	2 cut(s)	179, 1018
Bsp143I	GATC	5 cut(s)	61, 97, 526, 628, 975
BspACI	CCGC	8 cut(s)	19, 53, 190, 193, 494, 905, 924, 937
BspCNI	CTCAG	3 cut(s)	372, 844, 844
BspLI	GGNNCC	4 cut(s)	156, 157, 771, 960
BspMAI	CTGCAG	1 cut(s)	660
BspPI	GGATC	1 cut(s)	105
BspT107I	GGYRCC	1 cut(s)	769
BsrBI	CCGCTC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	675
BssMI	GATC	5 cut(s)	61, 97, 526, 628, 975
BssNI	GRCGYC	2 cut(s)	770, 984
Bst2UI	CCWGG	3 cut(s)	181, 1004, 1031
Bst4CI	ACNGT	2 cut(s)	651, 968
BstACI	GRCGYC	2 cut(s)	770, 984
BstC8I	GCNNGC	3 cut(s)	337, 352, 656
BstDEI	CTNAG	7 cut(s)	306, 380, 436, 597, 606, 831, 852
BstENI	CCTNNNNNAGG	1 cut(s)	596
BstF5I	GGATG	2 cut(s)	339, 895
BstH2I	RGCGCY	1 cut(s)	773
BstHHI	GCGC	1 cut(s)	772
BstKTI	GATC	5 cut(s)	64, 100, 529, 631, 978
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	5 cut(s)	61, 97, 526, 628, 975
BstMCI	CGRYCG	1 cut(s)	884
BstMWI	GCNNNNNNNGC	7 cut(s)	238, 398, 500, 602, 611, 664, 701
BstNI	CCWGG	3 cut(s)	181, 1004, 1031
BstSCI	CCNGG	3 cut(s)	179, 1002, 1029
BstSFI	CTRYAG	2 cut(s)	656, 729
BstV1I	GCAGC	1 cut(s)	667
BtsCI	GGATG	2 cut(s)	339, 895
BtsI	GCAGTG	1 cut(s)	277
BtsIMutI	CAGTG	3 cut(s)	277, 638, 647
Cac8I	GCNNGC	3 cut(s)	337, 352, 656
CfoI	GCGC	1 cut(s)	772
Cfr13I	GGNCC	4 cut(s)	155, 195, 848, 958
CseI	GACGC	1 cut(s)	374
CsiI	ACCWGGT	1 cut(s)	1002
Csp6I	GTAC	1 cut(s)	661
CviAII	CATG	2 cut(s)	302, 615
CviQI	GTAC	1 cut(s)	661
DdeI	CTNAG	7 cut(s)	306, 380, 436, 597, 606, 831, 852
DinI	GGCGCC	1 cut(s)	771
DpnI	GATC	5 cut(s)	63, 99, 528, 630, 977
DpnII	GATC	5 cut(s)	61, 97, 526, 628, 975
EciI	GGCGGA	1 cut(s)	509
Ecl136II	GAGCTC	2 cut(s)	177, 1016
Eco24I	GRGCYC	2 cut(s)	179, 1018
Eco47I	GGWCC	4 cut(s)	155, 195, 848, 958
Eco53kI	GAGCTC	2 cut(s)	177, 1016
EcoICRI	GAGCTC	2 cut(s)	177, 1016
EcoNI	CCTNNNNNAGG	1 cut(s)	596
EcoO109I	RGGNCCY	1 cut(s)	155
EcoRI	GAATTC	1 cut(s)	708
EcoRII	CCWGG	3 cut(s)	179, 1002, 1029
EcoT22I	ATGCAT	1 cut(s)	294
EcoT38I	GRGCYC	2 cut(s)	179, 1018
EgeI	GGCGCC	1 cut(s)	771
EheI	GGCGCC	1 cut(s)	771
FaeI	CATG	2 cut(s)	305, 618
FaiI	YATR	8 cut(s)	288, 290, 303, 403, 405, 547, 616, 801
FaqI	GGGAC	4 cut(s)	129, 168, 238, 871
FatI	CATG	2 cut(s)	301, 614
FauI	CCCGC	1 cut(s)	26
FauNDI	CATATG	1 cut(s)	403
FbaI	TGATCA	1 cut(s)	628
Fnu4HI	GCNGC	6 cut(s)	191, 681, 906, 925, 938, 1024
FokI	GGATG	2 cut(s)	326, 882
FriOI	GRGCYC	2 cut(s)	179, 1018
Fsp4HI	GCNGC	6 cut(s)	191, 681, 906, 925, 938, 1024
FspBI	CTAG	3 cut(s)	705, 713, 914
GlaI	GCGC	1 cut(s)	771
GluI	GCNGC	6 cut(s)	191, 681, 906, 925, 938, 1024
GsuI	CTGGAG	2 cut(s)	93, 163
HaeII	RGCGCY	1 cut(s)	773
HapII	CCGG	2 cut(s)	773, 880
HgaI	GACGC	1 cut(s)	374
HhaI	GCGC	1 cut(s)	772
Hin1I	GRCGYC	2 cut(s)	770, 984
Hin1II	CATG	2 cut(s)	305, 618
Hin6I	GCGC	1 cut(s)	770
HinP1I	GCGC	1 cut(s)	770
HindIII	AAGCTT	3 cut(s)	230, 816, 993
HinfI	GANTC	2 cut(s)	169, 910
HpaII	CCGG	2 cut(s)	773, 880
HphI	GGTGA	2 cut(s)	92, 862
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	9 cut(s)	97, 174, 249, 381, 449, 467, 958, 975, 982
Hpy188III	TCNNGA	5 cut(s)	110, 215, 530, 713, 851
Hpy8I	GTNNAC	1 cut(s)	361
Hpy99I	CGWCG	3 cut(s)	368, 986, 989
HpyAV	CCTTC	4 cut(s)	730, 782, 805, 927
HpyCH4III	ACNGT	2 cut(s)	651, 968
HpyCH4IV	ACGT	1 cut(s)	984
HpyCH4V	TGCA	7 cut(s)	257, 263, 292, 329, 339, 354, 658
HpyF10VI	GCNNNNNNNGC	7 cut(s)	238, 398, 500, 602, 611, 664, 701
HpyF3I	CTNAG	7 cut(s)	306, 380, 436, 597, 606, 831, 852
HpySE526I	ACGT	1 cut(s)	984
Hsp92I	GRCGYC	2 cut(s)	770, 984
Hsp92II	CATG	2 cut(s)	305, 618
HspAI	GCGC	1 cut(s)	770
KasI	GGCGCC	1 cut(s)	769
KflI	GGGWCCC	1 cut(s)	155
Ksp22I	TGATCA	1 cut(s)	628
Kzo9I	GATC	5 cut(s)	61, 97, 526, 628, 975
LmnI	GCTCC	4 cut(s)	174, 182, 882, 1013
Lsp1109I	GCAGC	1 cut(s)	667
LweI	GCATC	4 cut(s)	301, 348, 628, 904
MabI	ACCWGGT	1 cut(s)	1002
MaeI	CTAG	3 cut(s)	705, 713, 914
MaeII	ACGT	1 cut(s)	984
MaeIII	GTNAC	2 cut(s)	791, 868
MalI	GATC	5 cut(s)	63, 99, 528, 630, 977
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	5 cut(s)	61, 97, 526, 628, 975
MboII	GAAGA	1 cut(s)	36
MfeI	CAATTG	3 cut(s)	252, 516, 690
MhlI	GDGCHC	2 cut(s)	179, 1018
MluCI	AATT	9 cut(s)	185, 252, 458, 516, 690, 708, 744, 779, 943
Mly113I	GGCGCC	1 cut(s)	770
MmeI	TCCRAC	2 cut(s)	735, 1005
Mph1103I	ATGCAT	1 cut(s)	294
MseI	TTAA	4 cut(s)	234, 423, 578, 858
MslI	CAYNNNNRTG	1 cut(s)	649
MspI	CCGG	2 cut(s)	773, 880
MspR9I	CCNGG	3 cut(s)	181, 1004, 1031
MunI	CAATTG	3 cut(s)	252, 516, 690
MvaI	CCWGG	3 cut(s)	181, 1004, 1031
MwoI	GCNNNNNNNGC	7 cut(s)	238, 398, 500, 602, 611, 664, 701
NarI	GGCGCC	1 cut(s)	770
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	5 cut(s)	61, 97, 526, 628, 975
NlaIII	CATG	2 cut(s)	305, 618
NlaIV	GGNNCC	4 cut(s)	156, 157, 771, 960
NmuCI	GTSAC	1 cut(s)	868
NsiI	ATGCAT	1 cut(s)	294
PfeI	GAWTC	2 cut(s)	169, 910
PfoI	TCCNGGA	2 cut(s)	179, 1029
PkrI	GCNGC	6 cut(s)	192, 682, 907, 926, 939, 1025
PluTI	GGCGCC	1 cut(s)	773
PpuMI	RGGWCCY	1 cut(s)	155
Psp124BI	GAGCTC	2 cut(s)	179, 1018
Psp5II	RGGWCCY	1 cut(s)	155
Psp6I	CCWGG	3 cut(s)	179, 1002, 1029
PspGI	CCWGG	3 cut(s)	179, 1002, 1029
PspN4I	GGNNCC	4 cut(s)	156, 157, 771, 960
PspPI	GGNCC	4 cut(s)	155, 195, 848, 958
PspPPI	RGGWCCY	1 cut(s)	155
PstI	CTGCAG	1 cut(s)	660
RsaI	GTAC	1 cut(s)	662
RsaNI	GTAC	1 cut(s)	661
RseI	CAYNNNNRTG	1 cut(s)	649
SacI	GAGCTC	2 cut(s)	179, 1018
SaqAI	TTAA	4 cut(s)	234, 423, 578, 858
SatI	GCNGC	6 cut(s)	191, 681, 906, 925, 938, 1024
Sau3AI	GATC	5 cut(s)	61, 97, 526, 628, 975
Sau96I	GGNCC	4 cut(s)	155, 195, 848, 958
ScrFI	CCNGG	3 cut(s)	181, 1004, 1031
SduI	GDGCHC	2 cut(s)	179, 1018
SexAI	ACCWGGT	1 cut(s)	1002
SfaNI	GCATC	4 cut(s)	301, 348, 628, 904
SfcI	CTRYAG	2 cut(s)	656, 729
SfoI	GGCGCC	1 cut(s)	771
SinI	GGWCC	4 cut(s)	155, 195, 848, 958
SmiMI	CAYNNNNRTG	1 cut(s)	649
Sse9I	AATT	9 cut(s)	185, 252, 458, 516, 690, 708, 744, 779, 943
SsiI	CCGC	8 cut(s)	19, 53, 190, 193, 494, 905, 924, 937
SspDI	GGCGCC	1 cut(s)	769
SspMI	CTAG	3 cut(s)	705, 713, 914
SstI	GAGCTC	2 cut(s)	179, 1018
StyD4I	CCNGG	3 cut(s)	179, 1002, 1029
TaaI	ACNGT	2 cut(s)	651, 968
TaiI	ACGT	1 cut(s)	987
TaqI	TCGA	1 cut(s)	124
TasI	AATT	9 cut(s)	185, 252, 458, 516, 690, 708, 744, 779, 943
TatI	WGTACW	1 cut(s)	660
TauI	GCSGC	4 cut(s)	193, 908, 927, 940
TfiI	GAWTC	2 cut(s)	169, 910
Tru1I	TTAA	4 cut(s)	234, 423, 578, 858
Tru9I	TTAA	4 cut(s)	234, 423, 578, 858
TscAI	CASTG	3 cut(s)	284, 638, 654
TseFI	GTSAC	1 cut(s)	868
TseI	GCWGC	2 cut(s)	680, 1023
Tsp45I	GTSAC	1 cut(s)	868
TspDTI	ATGAA	1 cut(s)	801
TspGWI	ACGGA	1 cut(s)	417
TspRI	CASTG	3 cut(s)	284, 638, 654
VpaK11BI	GGWCC	4 cut(s)	155, 195, 848, 958
XagI	CCTNNNNNAGG	1 cut(s)	596
XapI	RAATTY	4 cut(s)	458, 708, 744, 943
XbaI	TCTAGA	1 cut(s)	712
XspI	CTAG	3 cut(s)	705, 713, 914
ZraI	GACGTC	1 cut(s)	985
Zsp2I	ATGCAT	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.