Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001147

Physical Location & Seq

Genomic Coordinates Forward (+)

2178615 .. 2181309

Gene Structure 2695 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G002440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGCCCAACACCCTTTCCCGCCAAAACGAGCCGAAGCAGTTTTCTTCCTCTCCGCTCAAAGATCAAACCCTAAACCTCCAAAGCCCCCTTTACTCGGATCACCCTCCTCCAGACCCGAAACATCGACCCGATTTGGAAACCCGTCCCCGATTGCCACCCGATTTGGAGATTCGGAGCTCCAGGCCTCATCTGACAATTGCAACTGCAAAGATGTTCTGCCACCGCTTTTATATGCATCAGTCTCATGCTAAGAATGATTGGCAGACTATTGCAACTGCTTGCATCCTTGTCGCCTGCAAAGTGGACGACGCACCACACTTTCTGAGTGATGTTGCTTTTGTGGCATATGAGATAGCACACAAGTTTAATCCGTCTGCCTTAGAGAGTATCAGACAAAGAGAATTTTTCAGAAAGCAAAAGGAGTTGATTGTAGTGGCGGAGAAAGCTCTATTGACAACAATTGACTTTGATCTTGACATTCAGCTTACATACAAGACACTTGTTGTGGTTCTAAAGAGATTAAATATCCCTGACCTCGCTAAGGTTGCTAAGGTGGCATGGCATCTTATTGATCAGTGGCTTCAAACATCACTGTGCCTGCAGTACAAGCCCCATTACATTGCTGCTGGTTCAATTGCTCTTGTTGCTAGAATTCTAGAAGTCAAACTACCTACAGAGAAGGGAAAAATTTGGTGGTTGGAGATTGATGTGGCGCCGGAACAATTAGATGAGGTCATTAAGTGGATGCATAGTAAATTGGAGCCTTTACCATGCAAAAGATTAGGAGAGTCTGTTATGTCTATTAACTGCCAAAATCTTGCAGAAGGTTACAACTATGCTACTACGAAGGAAGCTTTACCACCATCTCAGGTAAGTGATAGTGGTCCTGAGATTAAAGCAGTAAGATGGGAATTTGATAATCAGAACTCATTATGCAAGAGTTTAAAGATGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

318

Amino Acids

36.42

Weight (kDa)

8.09

Isoelectric Point (pI)

63.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	63 - 158	8.1e-10	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630
fragaria_vesca	FvH4_2g39390 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420
malus_domestica	MD04G1049900.v1.1 MD06G1050000.v1.1 MD08G1026200.v1.1
prunus_persica	Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1
pyrus_communis	pycom04g04390 pycom06g04230 pycom06g04240 pycom08g02030
rosa_chinensis	RchiOBHm_Chr2g0168341 RchiOBHm_Chr3g0451061 RchiOBHm_Chr6g0301611
rosa_laevigata	RLG00000011239 RLG00000021768 RLG00000025695
rosa_multiflora	Rmu_co8487951.1_g000001 Rmu_sc0000078.1_g000004 Rmu_sc0016462.1_g000004 Rmu_ssc0000452.1_g000012
rosa_roxburghii	Rroxscaffold_2G00083130 Rroxscaffold_7G00166600
rosa_rugosa	Rorug02G0532800 Rorug02G0532900 Rorug02G0533000 Rorug02G0533000 Rorug02G0630800 Rorug06G0307200 Rorug06G0307300
rosa_samantha	Rh2AG602100 Rh2BG615400 Rh2CG583100 Rh2DG625600 Rh3AG033200 Rh3BG033500 Rh3CG032200 Rh3DG033200 Rh6AG420100 Rh6BG426200 Rh6CG433100 Rh6DG419500
rosa_wichuraiana	Rw0G019830 Rw2G049980 Rw3G002440 Rw6G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	712
AccBSI	CCGCTC	1 cut(s)	55
AciI	CCGC	4 cut(s)	19, 53, 223, 437
AclWI	GGATC	1 cut(s)	105
AcsI	RAATTY	4 cut(s)	401, 651, 687, 911
AcyI	GRCGYC	1 cut(s)	713
AfaI	GTAC	1 cut(s)	605
AfiI	CCNNNNNNNGG	2 cut(s)	94, 541
AgsI	TTSAA	2 cut(s)	584, 633
AjnI	CCWGG	1 cut(s)	179
AluBI	AGCT	4 cut(s)	177, 446, 484, 854
AluI	AGCT	4 cut(s)	177, 446, 484, 854
Alw21I	GWGCWC	1 cut(s)	179
Alw26I	GTCTC	1 cut(s)	246
AlwI	GGATC	1 cut(s)	105
AoxI	GGCC	1 cut(s)	182
ApeKI	GCWGC	1 cut(s)	623
ApoI	RAATTY	4 cut(s)	401, 651, 687, 911
AspLEI	GCGC	1 cut(s)	715
AspS9I	GGNCC	1 cut(s)	884
AsuHPI	GGTGA	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	884
BanI	GGYRCC	1 cut(s)	712
BanII	GRGCYC	1 cut(s)	179
BarI	GAAGNNNNNNTAC	2 cut(s)	651, 683
Bbv12I	GWGCWC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	610
BccI	CCATC	2 cut(s)	871, 900
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BciT130I	CCWGG	1 cut(s)	181
BclI	TGATCA	1 cut(s)	571
BcoDI	GTCTC	1 cut(s)	246
BfaI	CTAG	2 cut(s)	648, 656
BfmI	CTRYAG	2 cut(s)	599, 672
BfoI	RGCGCY	1 cut(s)	716
BisI	GCNGC	1 cut(s)	624
BlsI	GCNGC	1 cut(s)	625
Bme1390I	CCNGG	1 cut(s)	181
Bme18I	GGWCC	1 cut(s)	884
BmgT120I	GGNCC	1 cut(s)	884
BmiI	GGNNCC	2 cut(s)	714, 762
BmrFI	CCNGG	1 cut(s)	181
BmsI	GCATC	5 cut(s)	244, 291, 571, 735, 939
BpmI	CTGGAG	2 cut(s)	93, 163
Bpu10I	CCTNAGC	2 cut(s)	540, 549
BsaHI	GRCGYC	1 cut(s)	713
BsaXI	ACNNNNNCTCC	2 cut(s)	777, 807
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 541
Bse3DI	GCAATG	1 cut(s)	618
BseBI	CCWGG	1 cut(s)	181
BseGI	GGATG	2 cut(s)	282, 750
BseLI	CCNNNNNNNGG	2 cut(s)	94, 541
BseMI	GCAATG	1 cut(s)	618
BseMII	CTCAG	3 cut(s)	314, 879, 881
BseRI	GAGGAG	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	610
BshFI	GGCC	1 cut(s)	184
BshNI	GGYRCC	1 cut(s)	712
BsiHKAI	GWGCWC	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	716
BslFI	GGGAC	1 cut(s)	129
BslI	CCNNNNNNNGG	2 cut(s)	94, 541
BsmAI	GTCTC	1 cut(s)	246
BsmFI	GGGAC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	179
Bsp143I	GATC	4 cut(s)	61, 97, 469, 571
BspACI	CCGC	4 cut(s)	19, 53, 223, 437
BspANI	GGCC	1 cut(s)	184
BspCNI	CTCAG	3 cut(s)	315, 880, 880
BspLI	GGNNCC	2 cut(s)	714, 762
BspMAI	CTGCAG	1 cut(s)	603
BspPI	GGATC	1 cut(s)	105
BspT107I	GGYRCC	1 cut(s)	712
BsrBI	CCGCTC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	618
BssMI	GATC	4 cut(s)	61, 97, 469, 571
BssNI	GRCGYC	1 cut(s)	713
Bst2UI	CCWGG	1 cut(s)	181
Bst4CI	ACNGT	1 cut(s)	594
BstACI	GRCGYC	1 cut(s)	713
BstC8I	GCNNGC	3 cut(s)	280, 295, 599
BstDEI	CTNAG	7 cut(s)	249, 323, 379, 540, 549, 867, 888
BstENI	CCTNNNNNAGG	1 cut(s)	539
BstF5I	GGATG	2 cut(s)	282, 750
BstH2I	RGCGCY	1 cut(s)	716
BstHHI	GCGC	1 cut(s)	715
BstKTI	GATC	4 cut(s)	64, 100, 472, 574
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	4 cut(s)	61, 97, 469, 571
BstMWI	GCNNNNNNNGC	6 cut(s)	341, 443, 545, 554, 607, 644
BstNI	CCWGG	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	179
BstSFI	CTRYAG	2 cut(s)	599, 672
BstV1I	GCAGC	1 cut(s)	610
BsuRI	GGCC	1 cut(s)	184
BtsCI	GGATG	2 cut(s)	282, 750
BtsIMutI	CAGTG	2 cut(s)	581, 590
Cac8I	GCNNGC	3 cut(s)	280, 295, 599
CfoI	GCGC	1 cut(s)	715
Cfr13I	GGNCC	1 cut(s)	884
CseI	GACGC	1 cut(s)	317
Csp6I	GTAC	1 cut(s)	604
CspCI	CAANNNNNGTGG	2 cut(s)	144, 179
CviAII	CATG	3 cut(s)	245, 558, 771
CviQI	GTAC	1 cut(s)	604
DdeI	CTNAG	7 cut(s)	249, 323, 379, 540, 549, 867, 888
DinI	GGCGCC	1 cut(s)	714
DpnI	GATC	4 cut(s)	63, 99, 471, 573
DpnII	GATC	4 cut(s)	61, 97, 469, 571
DraI	TTTAAA	1 cut(s)	945
EciI	GGCGGA	1 cut(s)	452
Ecl136II	GAGCTC	1 cut(s)	177
Eco147I	AGGCCT	1 cut(s)	184
Eco24I	GRGCYC	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	884
Eco53kI	GAGCTC	1 cut(s)	177
EcoICRI	GAGCTC	1 cut(s)	177
EcoNI	CCTNNNNNAGG	1 cut(s)	539
EcoRI	GAATTC	1 cut(s)	651
EcoRII	CCWGG	1 cut(s)	179
EcoT22I	ATGCAT	3 cut(s)	237, 750, 954
EcoT38I	GRGCYC	1 cut(s)	179
EgeI	GGCGCC	1 cut(s)	714
EheI	GGCGCC	1 cut(s)	714
FaeI	CATG	3 cut(s)	248, 561, 774
FaqI	GGGAC	1 cut(s)	129
FatI	CATG	3 cut(s)	244, 557, 770
FauI	CCCGC	1 cut(s)	26
FauNDI	CATATG	1 cut(s)	346
FbaI	TGATCA	1 cut(s)	571
Fnu4HI	GCNGC	1 cut(s)	624
FokI	GGATG	2 cut(s)	269, 757
FriOI	GRGCYC	1 cut(s)	179
Fsp4HI	GCNGC	1 cut(s)	624
FspBI	CTAG	2 cut(s)	648, 656
GlaI	GCGC	1 cut(s)	714
GluI	GCNGC	1 cut(s)	624
GsuI	CTGGAG	2 cut(s)	93, 163
HaeII	RGCGCY	1 cut(s)	716
HaeIII	GGCC	1 cut(s)	184
HapII	CCGG	1 cut(s)	716
HgaI	GACGC	1 cut(s)	317
HhaI	GCGC	1 cut(s)	715
Hin1I	GRCGYC	1 cut(s)	713
Hin1II	CATG	3 cut(s)	248, 561, 774
Hin6I	GCGC	1 cut(s)	713
HinP1I	GCGC	1 cut(s)	713
HindIII	AAGCTT	1 cut(s)	852
HinfI	GANTC	2 cut(s)	169, 788
HpaII	CCGG	1 cut(s)	716
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	7 cut(s)	97, 174, 192, 324, 392, 410, 924
Hpy188III	TCNNGA	4 cut(s)	110, 473, 656, 887
Hpy8I	GTNNAC	1 cut(s)	304
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	3 cut(s)	673, 818, 841
HpyCH4III	ACNGT	1 cut(s)	594
HpyF10VI	GCNNNNNNNGC	6 cut(s)	341, 443, 545, 554, 607, 644
HpyF3I	CTNAG	7 cut(s)	249, 323, 379, 540, 549, 867, 888
Hsp92I	GRCGYC	1 cut(s)	713
Hsp92II	CATG	3 cut(s)	248, 561, 774
HspAI	GCGC	1 cut(s)	713
KasI	GGCGCC	1 cut(s)	712
Ksp22I	TGATCA	1 cut(s)	571
Kzo9I	GATC	4 cut(s)	61, 97, 469, 571
LmnI	GCTCC	3 cut(s)	174, 182, 760
Lsp1109I	GCAGC	1 cut(s)	610
LweI	GCATC	5 cut(s)	244, 291, 571, 735, 939
MaeI	CTAG	2 cut(s)	648, 656
MaeIII	GTNAC	1 cut(s)	827
MalI	GATC	4 cut(s)	63, 99, 471, 573
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	4 cut(s)	61, 97, 469, 571
MboII	GAAGA	1 cut(s)	36
MfeI	CAATTG	3 cut(s)	195, 459, 633
MhlI	GDGCHC	1 cut(s)	179
MluCI	AATT	9 cut(s)	195, 401, 459, 633, 651, 687, 722, 755, 911
Mly113I	GGCGCC	1 cut(s)	713
MlyI	GAGTC	1 cut(s)	797
MmeI	TCCRAC	1 cut(s)	678
MnlI	CCTC	7 cut(s)	58, 86, 114, 117, 195, 545, 724
Mph1103I	ATGCAT	3 cut(s)	237, 750, 954
MseI	TTAA	6 cut(s)	366, 521, 738, 804, 894, 944
MslI	CAYNNNNRTG	1 cut(s)	592
MspI	CCGG	1 cut(s)	716
MspR9I	CCNGG	1 cut(s)	181
MunI	CAATTG	3 cut(s)	195, 459, 633
MvaI	CCWGG	1 cut(s)	181
MwoI	GCNNNNNNNGC	6 cut(s)	341, 443, 545, 554, 607, 644
NarI	GGCGCC	1 cut(s)	713
NdeI	CATATG	1 cut(s)	346
NdeII	GATC	4 cut(s)	61, 97, 469, 571
NlaIII	CATG	3 cut(s)	248, 561, 774
NlaIV	GGNNCC	2 cut(s)	714, 762
NsiI	ATGCAT	3 cut(s)	237, 750, 954
PceI	AGGCCT	1 cut(s)	184
PfeI	GAWTC	1 cut(s)	169
PkrI	GCNGC	1 cut(s)	625
PleI	GAGTC	1 cut(s)	796
PluTI	GGCGCC	1 cut(s)	716
PpsI	GAGTC	1 cut(s)	796
Psp124BI	GAGCTC	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	179
PspN4I	GGNNCC	2 cut(s)	714, 762
PspPI	GGNCC	1 cut(s)	884
PstI	CTGCAG	1 cut(s)	603
RsaI	GTAC	1 cut(s)	605
RsaNI	GTAC	1 cut(s)	604
RseI	CAYNNNNRTG	1 cut(s)	592
SacI	GAGCTC	1 cut(s)	179
SaqAI	TTAA	6 cut(s)	366, 521, 738, 804, 894, 944
SatI	GCNGC	1 cut(s)	624
Sau3AI	GATC	4 cut(s)	61, 97, 469, 571
Sau96I	GGNCC	1 cut(s)	884
SchI	GAGTC	1 cut(s)	797
ScrFI	CCNGG	1 cut(s)	181
SduI	GDGCHC	1 cut(s)	179
SfaNI	GCATC	5 cut(s)	244, 291, 571, 735, 939
SfcI	CTRYAG	2 cut(s)	599, 672
SfoI	GGCGCC	1 cut(s)	714
SinI	GGWCC	1 cut(s)	884
SmiMI	CAYNNNNRTG	1 cut(s)	592
Sse9I	AATT	9 cut(s)	195, 401, 459, 633, 651, 687, 722, 755, 911
SseBI	AGGCCT	1 cut(s)	184
SsiI	CCGC	4 cut(s)	19, 53, 223, 437
SspDI	GGCGCC	1 cut(s)	712
SspMI	CTAG	2 cut(s)	648, 656
SstI	GAGCTC	1 cut(s)	179
StuI	AGGCCT	1 cut(s)	184
StyD4I	CCNGG	1 cut(s)	179
TaaI	ACNGT	1 cut(s)	594
TaqI	TCGA	1 cut(s)	124
TasI	AATT	9 cut(s)	195, 401, 459, 633, 651, 687, 722, 755, 911
TatI	WGTACW	1 cut(s)	603
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	6 cut(s)	366, 521, 738, 804, 894, 944
Tru9I	TTAA	6 cut(s)	366, 521, 738, 804, 894, 944
TscAI	CASTG	2 cut(s)	581, 597
TseI	GCWGC	1 cut(s)	623
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	2 cut(s)	581, 597
VpaK11BI	GGWCC	1 cut(s)	884
XagI	CCTNNNNNAGG	1 cut(s)	539
XapI	RAATTY	4 cut(s)	401, 651, 687, 911
XbaI	TCTAGA	1 cut(s)	655
XspI	CTAG	2 cut(s)	648, 656
Zsp2I	ATGCAT	3 cut(s)	237, 750, 954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.