Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001147

Physical Location & Seq

Genomic Coordinates Forward (+)

2230902 .. 2233798

Gene Structure 2897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG033200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGCCCAACACCCTTTCCCGCCAAAACGAGCCGAAGCAGTTTTCTTCCTCTCCGCTCAAAGATCAAACCCTAAACCTCCAAAGCCCCCTTTACTCGGATCACCCTCCTCCAGACCCGAAACATCGACCCGATTTGGAAACCCTTTCCCGATTGCGACCCGATTTGGAGATTCGGAGCTCCAGGCCTCATCTGACAATTGCAACTGCAAAGATGTTGTGCCACCGCTTTTATATGCATCAGTCTCATGCTAAGAATGATTGGCAGACTATTGCAACTGCTTGCATCCTTGTCGCCTGCAAAGTGGACGACACACCACACTTTCTGAGTGATGTTGCTTTTGAATTTTTCAGAAAGCAAAAGGAGTTTATTGTAGTGGCGGAGAGAGCTCTATTGACAACAATTGACTTTGATCTTGACATTCAGCTTCCATACAAGACACTTGTTGTGGTTCTAAAGAGATTAAATATCCCTGACCTCGCTAAGGTGGGATGGCATCTTATTGATCAGTGGCTTCAAACATCACTGTGCCTGCAGTACAAGCCCCATTACATTGCTGCTGGTTCAATTGCTCTTGTTGCTAGAATTCTAGAAGTCAAACTACCTACAGAGAAGGGAAAAATTTGGTGGTTGGAGATTGATGTGGCGCCGGAACAATTAGATGATTTCCCTCTTCAACTCCTCCCTTCTTATTGTATATTGGTGTTGGGTGTTTGCTTCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

240

Amino Acids

27.6

Weight (kDa)

6.75

Isoelectric Point (pI)

62.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	63 - 138	7.7e-11	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630
fragaria_vesca	FvH4_2g39390 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420
malus_domestica	MD04G1049900.v1.1 MD06G1050000.v1.1 MD08G1026200.v1.1
prunus_persica	Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1
pyrus_communis	pycom04g04390 pycom06g04230 pycom06g04240 pycom08g02030
rosa_chinensis	RchiOBHm_Chr2g0168341 RchiOBHm_Chr3g0451061 RchiOBHm_Chr6g0301611
rosa_laevigata	RLG00000011239 RLG00000021768 RLG00000025695
rosa_multiflora	Rmu_co8487951.1_g000001 Rmu_sc0000078.1_g000004 Rmu_sc0016462.1_g000004 Rmu_ssc0000452.1_g000012
rosa_roxburghii	Rroxscaffold_2G00083130 Rroxscaffold_7G00166600
rosa_rugosa	Rorug02G0532800 Rorug02G0532900 Rorug02G0533000 Rorug02G0533000 Rorug02G0630800 Rorug06G0307200 Rorug06G0307300
rosa_samantha	Rh2AG602100 Rh2BG615400 Rh2CG583100 Rh2DG625600 Rh3AG033200 Rh3BG033500 Rh3CG032200 Rh3DG033200 Rh6AG420100 Rh6BG426200 Rh6CG433100 Rh6DG419500
rosa_wichuraiana	Rw0G019830 Rw2G049980 Rw3G002440 Rw6G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	643
AccBSI	CCGCTC	1 cut(s)	55
AciI	CCGC	4 cut(s)	19, 53, 223, 377
AclWI	GGATC	1 cut(s)	105
AcsI	RAATTY	3 cut(s)	341, 582, 618
AcyI	GRCGYC	1 cut(s)	644
AfaI	GTAC	1 cut(s)	536
AfiI	CCNNNNNNNGG	2 cut(s)	94, 481
AgsI	TTSAA	4 cut(s)	341, 515, 564, 674
AjnI	CCWGG	1 cut(s)	179
AluBI	AGCT	3 cut(s)	177, 386, 424
AluI	AGCT	3 cut(s)	177, 386, 424
Alw21I	GWGCWC	2 cut(s)	179, 388
Alw26I	GTCTC	1 cut(s)	246
AlwI	GGATC	1 cut(s)	105
AoxI	GGCC	1 cut(s)	182
ApeKI	GCWGC	1 cut(s)	554
ApoI	RAATTY	3 cut(s)	341, 582, 618
AspLEI	GCGC	1 cut(s)	646
AsuHPI	GGTGA	1 cut(s)	92
BanI	GGYRCC	1 cut(s)	643
BanII	GRGCYC	2 cut(s)	179, 388
BarI	GAAGNNNNNNTAC	2 cut(s)	582, 614
Bbv12I	GWGCWC	2 cut(s)	179, 388
BbvI	GCAGC	1 cut(s)	541
BccI	CCATC	1 cut(s)	483
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BciT130I	CCWGG	1 cut(s)	181
BclI	TGATCA	1 cut(s)	502
BcoDI	GTCTC	1 cut(s)	246
BfaI	CTAG	2 cut(s)	579, 587
BfmI	CTRYAG	2 cut(s)	530, 603
BfoI	RGCGCY	1 cut(s)	647
BisI	GCNGC	1 cut(s)	555
BlsI	GCNGC	1 cut(s)	556
Bme1390I	CCNGG	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	645
BmrFI	CCNGG	1 cut(s)	181
BmsI	GCATC	3 cut(s)	244, 291, 502
BpmI	CTGGAG	2 cut(s)	93, 163
Bpu10I	CCTNAGC	1 cut(s)	480
BsaHI	GRCGYC	1 cut(s)	644
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 481
Bse3DI	GCAATG	1 cut(s)	549
BseBI	CCWGG	1 cut(s)	181
BseGI	GGATG	2 cut(s)	282, 494
BseLI	CCNNNNNNNGG	2 cut(s)	94, 481
BseMI	GCAATG	1 cut(s)	549
BseMII	CTCAG	1 cut(s)	314
BseRI	GAGGAG	2 cut(s)	96, 668
BseXI	GCAGC	1 cut(s)	541
BshFI	GGCC	1 cut(s)	184
BshNI	GGYRCC	1 cut(s)	643
BsiHKAI	GWGCWC	2 cut(s)	179, 388
BsiSI	CCGG	1 cut(s)	647
BslI	CCNNNNNNNGG	2 cut(s)	94, 481
BsmAI	GTCTC	1 cut(s)	246
BsnI	GGCC	1 cut(s)	184
Bsp1286I	GDGCHC	2 cut(s)	179, 388
Bsp143I	GATC	4 cut(s)	61, 97, 409, 502
BspACI	CCGC	4 cut(s)	19, 53, 223, 377
BspANI	GGCC	1 cut(s)	184
BspCNI	CTCAG	1 cut(s)	315
BspLI	GGNNCC	1 cut(s)	645
BspMAI	CTGCAG	1 cut(s)	534
BspPI	GGATC	1 cut(s)	105
BspT107I	GGYRCC	1 cut(s)	643
BsrBI	CCGCTC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	549
BssMI	GATC	4 cut(s)	61, 97, 409, 502
BssNI	GRCGYC	1 cut(s)	644
Bst2UI	CCWGG	1 cut(s)	181
Bst4CI	ACNGT	1 cut(s)	525
Bst6I	CTCTTC	1 cut(s)	675
BstACI	GRCGYC	1 cut(s)	644
BstC8I	GCNNGC	3 cut(s)	280, 295, 530
BstDEI	CTNAG	3 cut(s)	249, 323, 480
BstENI	CCTNNNNNAGG	1 cut(s)	479
BstF5I	GGATG	2 cut(s)	282, 494
BstH2I	RGCGCY	1 cut(s)	647
BstHHI	GCGC	1 cut(s)	646
BstKTI	GATC	4 cut(s)	64, 100, 412, 505
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	4 cut(s)	61, 97, 409, 502
BstMWI	GCNNNNNNNGC	3 cut(s)	383, 538, 575
BstNI	CCWGG	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	179
BstSFI	CTRYAG	2 cut(s)	530, 603
BstV1I	GCAGC	1 cut(s)	541
BsuRI	GGCC	1 cut(s)	184
BtsCI	GGATG	2 cut(s)	282, 494
BtsIMutI	CAGTG	2 cut(s)	512, 521
Cac8I	GCNNGC	3 cut(s)	280, 295, 530
CfoI	GCGC	1 cut(s)	646
Csp6I	GTAC	1 cut(s)	535
CviAII	CATG	1 cut(s)	245
CviJI	RGCY	8 cut(s)	31, 84, 177, 184, 386, 424, 511, 541
CviKI_1	RGCY	8 cut(s)	31, 84, 177, 184, 386, 424, 511, 541
CviQI	GTAC	1 cut(s)	535
DdeI	CTNAG	3 cut(s)	249, 323, 480
DinI	GGCGCC	1 cut(s)	645
DpnI	GATC	4 cut(s)	63, 99, 411, 504
DpnII	GATC	4 cut(s)	61, 97, 409, 502
Eam1104I	CTCTTC	1 cut(s)	675
EarI	CTCTTC	1 cut(s)	675
EciI	GGCGGA	1 cut(s)	392
Ecl136II	GAGCTC	2 cut(s)	177, 386
Eco147I	AGGCCT	1 cut(s)	184
Eco24I	GRGCYC	2 cut(s)	179, 388
Eco53kI	GAGCTC	2 cut(s)	177, 386
EcoICRI	GAGCTC	2 cut(s)	177, 386
EcoNI	CCTNNNNNAGG	1 cut(s)	479
EcoRI	GAATTC	1 cut(s)	582
EcoRII	CCWGG	1 cut(s)	179
EcoT22I	ATGCAT	1 cut(s)	237
EcoT38I	GRGCYC	2 cut(s)	179, 388
EgeI	GGCGCC	1 cut(s)	645
EheI	GGCGCC	1 cut(s)	645
FaeI	CATG	1 cut(s)	248
FaiI	YATR	5 cut(s)	231, 233, 246, 430, 695
FatI	CATG	1 cut(s)	244
FauI	CCCGC	1 cut(s)	26
FbaI	TGATCA	1 cut(s)	502
Fnu4HI	GCNGC	1 cut(s)	555
FokI	GGATG	2 cut(s)	269, 501
FriOI	GRGCYC	2 cut(s)	179, 388
Fsp4HI	GCNGC	1 cut(s)	555
FspBI	CTAG	2 cut(s)	579, 587
GlaI	GCGC	1 cut(s)	645
GluI	GCNGC	1 cut(s)	555
GsuI	CTGGAG	2 cut(s)	93, 163
HaeII	RGCGCY	1 cut(s)	647
HaeIII	GGCC	1 cut(s)	184
HapII	CCGG	1 cut(s)	647
HhaI	GCGC	1 cut(s)	646
Hin1I	GRCGYC	1 cut(s)	644
Hin1II	CATG	1 cut(s)	248
Hin6I	GCGC	1 cut(s)	644
HinP1I	GCGC	1 cut(s)	644
HinfI	GANTC	1 cut(s)	169
HpaII	CCGG	1 cut(s)	647
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	5 cut(s)	97, 174, 192, 324, 350
Hpy188III	TCNNGA	4 cut(s)	110, 147, 413, 587
Hpy8I	GTNNAC	1 cut(s)	304
HpyAV	CCTTC	2 cut(s)	604, 693
HpyCH4III	ACNGT	1 cut(s)	525
HpyCH4V	TGCA	7 cut(s)	200, 206, 235, 272, 282, 297, 532
HpyF10VI	GCNNNNNNNGC	3 cut(s)	383, 538, 575
HpyF3I	CTNAG	3 cut(s)	249, 323, 480
Hsp92I	GRCGYC	1 cut(s)	644
Hsp92II	CATG	1 cut(s)	248
HspAI	GCGC	1 cut(s)	644
KasI	GGCGCC	1 cut(s)	643
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	4 cut(s)	61, 97, 409, 502
LmnI	GCTCC	2 cut(s)	174, 182
LpnPI	CCDG	8 cut(s)	123, 166, 193, 307, 483, 542, 543, 660
Lsp1109I	GCAGC	1 cut(s)	541
LweI	GCATC	3 cut(s)	244, 291, 502
MaeI	CTAG	2 cut(s)	579, 587
MalI	GATC	4 cut(s)	63, 99, 411, 504
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	4 cut(s)	61, 97, 409, 502
MboII	GAAGA	2 cut(s)	36, 662
MfeI	CAATTG	3 cut(s)	195, 399, 564
MhlI	GDGCHC	2 cut(s)	179, 388
MluCI	AATT	7 cut(s)	195, 341, 399, 564, 582, 618, 653
Mly113I	GGCGCC	1 cut(s)	644
MmeI	TCCRAC	1 cut(s)	609
MnlI	CCTC	8 cut(s)	58, 86, 114, 117, 195, 485, 678, 689
Mph1103I	ATGCAT	1 cut(s)	237
MseI	TTAA	2 cut(s)	461, 721
MslI	CAYNNNNRTG	1 cut(s)	523
MspI	CCGG	1 cut(s)	647
MspR9I	CCNGG	1 cut(s)	181
MunI	CAATTG	3 cut(s)	195, 399, 564
MvaI	CCWGG	1 cut(s)	181
MwoI	GCNNNNNNNGC	3 cut(s)	383, 538, 575
NarI	GGCGCC	1 cut(s)	644
NdeII	GATC	4 cut(s)	61, 97, 409, 502
NlaIII	CATG	1 cut(s)	248
NlaIV	GGNNCC	1 cut(s)	645
NsiI	ATGCAT	1 cut(s)	237
PceI	AGGCCT	1 cut(s)	184
PfeI	GAWTC	1 cut(s)	169
PkrI	GCNGC	1 cut(s)	556
PluTI	GGCGCC	1 cut(s)	647
Psp124BI	GAGCTC	2 cut(s)	179, 388
Psp6I	CCWGG	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	179
PspN4I	GGNNCC	1 cut(s)	645
PstI	CTGCAG	1 cut(s)	534
RsaI	GTAC	1 cut(s)	536
RsaNI	GTAC	1 cut(s)	535
RseI	CAYNNNNRTG	1 cut(s)	523
SacI	GAGCTC	2 cut(s)	179, 388
SaqAI	TTAA	2 cut(s)	461, 721
SatI	GCNGC	1 cut(s)	555
Sau3AI	GATC	4 cut(s)	61, 97, 409, 502
ScrFI	CCNGG	1 cut(s)	181
SduI	GDGCHC	2 cut(s)	179, 388
SetI	ASST	7 cut(s)	78, 179, 388, 426, 477, 486, 604
SfaNI	GCATC	3 cut(s)	244, 291, 502
SfcI	CTRYAG	2 cut(s)	530, 603
SfoI	GGCGCC	1 cut(s)	645
SmiMI	CAYNNNNRTG	1 cut(s)	523
Sse9I	AATT	7 cut(s)	195, 341, 399, 564, 582, 618, 653
SseBI	AGGCCT	1 cut(s)	184
SsiI	CCGC	4 cut(s)	19, 53, 223, 377
SspDI	GGCGCC	1 cut(s)	643
SspMI	CTAG	2 cut(s)	579, 587
SstI	GAGCTC	2 cut(s)	179, 388
StuI	AGGCCT	1 cut(s)	184
StyD4I	CCNGG	1 cut(s)	179
TaaI	ACNGT	1 cut(s)	525
TaqI	TCGA	1 cut(s)	124
TasI	AATT	7 cut(s)	195, 341, 399, 564, 582, 618, 653
TatI	WGTACW	1 cut(s)	534
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	2 cut(s)	461, 721
Tru9I	TTAA	2 cut(s)	461, 721
TscAI	CASTG	2 cut(s)	512, 528
TseI	GCWGC	1 cut(s)	554
TspDTI	ATGAA	1 cut(s)	706
TspRI	CASTG	2 cut(s)	512, 528
XagI	CCTNNNNNAGG	1 cut(s)	479
XapI	RAATTY	3 cut(s)	341, 582, 618
XbaI	TCTAGA	1 cut(s)	586
XspI	CTAG	2 cut(s)	579, 587
Zsp2I	ATGCAT	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.