Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001147

Physical Location & Seq

Genomic Coordinates Forward (+)

5328704 .. 5329454

Gene Structure 751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g04230.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTTTCCAACCACTTATAAAATAAAACTTGGTTTACCAGACCGTATTCCGGGTTTCTCTGTTTGCTTCCGGGAAAGTGAGGGAAAATCTGGGATACTAGGAGCGAGGGAATTGCTTCCTTCGATTTTGGGTTGCTCTTGTTTTTTTTTTTTTTATTTATTTTTTTATTTTTTTTATTTTTTTTTATTGCAAAAGAGAATTGCGTGGGAGCGAAGTAACAAAAAAGGATTAACGAGCAGGCGATTAGGGTTACTCAAAAGCTTGAAGGAGATAGAAACGGAAACCCCATCTCGGAGGGACGGGATTAGCTGGATGAAAGAGTCGGAGTTGCGGAGATCTTACTGCTTGTTTCTGAGGGAGTTGGGGACGAAATTGAAAGTCGGTAGGTATATTTCGACCGCGATTATGTTATGCCACCAATTTTACATGCAGCAATCTCATGGCAAGAACGATTGGAAGATTGTTGCAACTTCAAGCATGCTTCTTGCATGCAAATTCGTCGAAGAAGTTAGGTTTTTGAATGACATTGTTTTCGTGGGGTATGAGATTGGGGAAAATTTTGAATTGGGTCAAAAGAGTAGTAGTGGTAGTATTAGACACACAGAATTTTTCCGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

207

Amino Acids

24.12

Weight (kDa)

9.55

Isoelectric Point (pI)

58.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630
fragaria_vesca	FvH4_2g39390 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420
malus_domestica	MD04G1049900.v1.1 MD06G1050000.v1.1 MD08G1026200.v1.1
prunus_persica	Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1
pyrus_communis	pycom04g04390 pycom06g04230 pycom06g04240 pycom08g02030
rosa_chinensis	RchiOBHm_Chr2g0168341 RchiOBHm_Chr3g0451061 RchiOBHm_Chr6g0301611
rosa_laevigata	RLG00000011239 RLG00000021768 RLG00000025695
rosa_multiflora	Rmu_co8487951.1_g000001 Rmu_sc0000078.1_g000004 Rmu_sc0016462.1_g000004 Rmu_ssc0000452.1_g000012
rosa_roxburghii	Rroxscaffold_2G00083130 Rroxscaffold_7G00166600
rosa_rugosa	Rorug02G0532800 Rorug02G0532900 Rorug02G0533000 Rorug02G0533000 Rorug02G0630800 Rorug06G0307200 Rorug06G0307300
rosa_samantha	Rh2AG602100 Rh2BG615400 Rh2CG583100 Rh2DG625600 Rh3AG033200 Rh3BG033500 Rh3CG032200 Rh3DG033200 Rh6AG420100 Rh6BG426200 Rh6CG433100 Rh6DG419500
rosa_wichuraiana	Rw0G019830 Rw2G049980 Rw3G002440 Rw6G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	18
AccII	CGCG	1 cut(s)	401
AccIII	TCCGGA	1 cut(s)	612
AciI	CCGC	2 cut(s)	331, 399
AcsI	RAATTY	3 cut(s)	494, 556, 605
AfiI	CCNNNNNNNGG	2 cut(s)	49, 291
AgsI	TTSAA	5 cut(s)	265, 376, 474, 520, 563
AluBI	AGCT	2 cut(s)	261, 309
AluI	AGCT	2 cut(s)	261, 309
Aor13HI	TCCGGA	1 cut(s)	612
ApeKI	GCWGC	1 cut(s)	430
ApoI	RAATTY	3 cut(s)	494, 556, 605
ArsI	GACNNNNNNTTYG	2 cut(s)	515, 547
Asp700I	GAANNNNTTC	1 cut(s)	114
AsuC2I	CCSGG	2 cut(s)	51, 71
BbvI	GCAGC	1 cut(s)	442
BccI	CCATC	1 cut(s)	295
BcgI	CGANNNNNNTGC	4 cut(s)	94, 128, 481, 515
BciVI	GTATCC	1 cut(s)	87
BcnI	CCSGG	2 cut(s)	51, 71
BfaI	CTAG	1 cut(s)	98
BfuI	GTATCC	1 cut(s)	87
BglII	AGATCT	1 cut(s)	335
BisI	GCNGC	1 cut(s)	431
BlsI	GCNGC	1 cut(s)	432
Bme1390I	CCNGG	2 cut(s)	51, 71
BmrFI	CCNGG	2 cut(s)	51, 71
BpuMI	CCSGG	2 cut(s)	51, 71
BsaWI	WCCGGW	1 cut(s)	612
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 291
BseAI	TCCGGA	1 cut(s)	612
BseGI	GGATG	1 cut(s)	318
BseLI	CCNNNNNNNGG	2 cut(s)	49, 291
BseMII	CTCAG	1 cut(s)	344
BseXI	GCAGC	1 cut(s)	442
Bsh1236I	CGCG	1 cut(s)	401
Bsh1285I	CGRYCG	1 cut(s)	399
BsiEI	CGRYCG	1 cut(s)	399
BsiSI	CCGG	3 cut(s)	50, 70, 613
BslFI	GGGAC	2 cut(s)	311, 379
BslI	CCNNNNNNNGG	2 cut(s)	49, 291
BsmFI	GGGAC	2 cut(s)	311, 379
Bsp13I	TCCGGA	1 cut(s)	612
Bsp143I	GATC	1 cut(s)	335
BspACI	CCGC	2 cut(s)	331, 399
BspCNI	CTCAG	1 cut(s)	345
BspEI	TCCGGA	1 cut(s)	612
BspFNI	CGCG	1 cut(s)	401
BssMI	GATC	1 cut(s)	335
Bst4CI	ACNGT	1 cut(s)	44
BstC8I	GCNNGC	3 cut(s)	239, 479, 490
BstDEI	CTNAG	1 cut(s)	353
BstF5I	GGATG	1 cut(s)	318
BstFNI	CGCG	1 cut(s)	401
BstKTI	GATC	1 cut(s)	338
BstMBI	GATC	1 cut(s)	335
BstMCI	CGRYCG	1 cut(s)	399
BstNSI	RCATGY	3 cut(s)	430, 481, 492
BstSCI	CCNGG	2 cut(s)	49, 69
BstUI	CGCG	1 cut(s)	401
BstV1I	GCAGC	1 cut(s)	442
BstX2I	RGATCY	1 cut(s)	335
BstYI	RGATCY	1 cut(s)	335
BsuI	GTATCC	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	318
Cac8I	GCNNGC	3 cut(s)	239, 479, 490
CviAII	CATG	4 cut(s)	427, 440, 478, 489
CviJI	RGCY	2 cut(s)	261, 309
CviKI_1	RGCY	2 cut(s)	261, 309
DdeI	CTNAG	1 cut(s)	353
DpnI	GATC	1 cut(s)	337
DpnII	GATC	1 cut(s)	335
FaeI	CATG	4 cut(s)	430, 443, 481, 492
FaiI	YATR	9 cut(s)	18, 390, 407, 412, 428, 441, 479, 490, 543
FaqI	GGGAC	2 cut(s)	311, 379
FatI	CATG	4 cut(s)	426, 439, 477, 488
Fnu4HI	GCNGC	1 cut(s)	431
FokI	GGATG	1 cut(s)	325
Fsp4HI	GCNGC	1 cut(s)	431
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	1 cut(s)	431
HapII	CCGG	3 cut(s)	50, 70, 613
Hin1II	CATG	4 cut(s)	430, 443, 481, 492
HindIII	AAGCTT	1 cut(s)	259
HinfI	GANTC	1 cut(s)	320
HpaII	CCGG	3 cut(s)	50, 70, 613
Hpy166II	GTNNAC	1 cut(s)	35
Hpy188I	TCNGA	3 cut(s)	294, 325, 354
Hpy188III	TCNNGA	1 cut(s)	613
Hpy8I	GTNNAC	1 cut(s)	35
Hpy99I	CGWCG	1 cut(s)	503
HpyAV	CCTTC	2 cut(s)	129, 259
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4V	TGCA	5 cut(s)	190, 430, 467, 488, 492
HpyF3I	CTNAG	1 cut(s)	353
Hsp92II	CATG	4 cut(s)	430, 443, 481, 492
Kpn2I	TCCGGA	1 cut(s)	612
Kzo9I	GATC	1 cut(s)	335
LmnI	GCTCC	2 cut(s)	101, 208
LpnPI	CCDG	6 cut(s)	51, 63, 75, 83, 223, 295
Lsp1109I	GCAGC	1 cut(s)	442
MaeI	CTAG	1 cut(s)	98
MaeIII	GTNAC	2 cut(s)	215, 249
MalI	GATC	1 cut(s)	337
MboI	GATC	1 cut(s)	335
MboII	GAAGA	2 cut(s)	469, 515
MflI	RGATCY	1 cut(s)	335
MluCI	AATT	8 cut(s)	110, 198, 371, 419, 494, 556, 563, 605
MlyI	GAGTC	1 cut(s)	329
MmeI	TCCRAC	2 cut(s)	32, 303
MnlI	CCTC	4 cut(s)	73, 99, 288, 348
MroI	TCCGGA	1 cut(s)	612
MroXI	GAANNNNTTC	1 cut(s)	114
MseI	TTAA	1 cut(s)	230
MspI	CCGG	3 cut(s)	50, 70, 613
MspR9I	CCNGG	2 cut(s)	51, 71
MvnI	CGCG	1 cut(s)	401
NciI	CCSGG	2 cut(s)	51, 71
NdeII	GATC	1 cut(s)	335
NlaIII	CATG	4 cut(s)	430, 443, 481, 492
NspI	RCATGY	3 cut(s)	430, 481, 492
PaeI	GCATGC	2 cut(s)	481, 492
PdmI	GAANNNNTTC	1 cut(s)	114
PfoI	TCCNGGA	1 cut(s)	69
PkrI	GCNGC	1 cut(s)	432
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
PsiI	TTATAA	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	335
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	1 cut(s)	431
Sau3AI	GATC	1 cut(s)	335
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	2 cut(s)	51, 71
SetI	ASST	4 cut(s)	263, 311, 389, 515
SphI	GCATGC	2 cut(s)	481, 492
Sse9I	AATT	8 cut(s)	110, 198, 371, 419, 494, 556, 563, 605
SsiI	CCGC	2 cut(s)	331, 399
SspMI	CTAG	1 cut(s)	98
StyD4I	CCNGG	2 cut(s)	49, 69
TaaI	ACNGT	1 cut(s)	44
TaqI	TCGA	3 cut(s)	122, 395, 501
TasI	AATT	8 cut(s)	110, 198, 371, 419, 494, 556, 563, 605
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TseI	GCWGC	1 cut(s)	430
TspDTI	ATGAA	1 cut(s)	329
TspGWI	ACGGA	1 cut(s)	293
XapI	RAATTY	3 cut(s)	494, 556, 605
XceI	RCATGY	3 cut(s)	430, 481, 492
XmnI	GAANNNNTTC	1 cut(s)	114
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.