Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001147

Physical Location & Seq

Genomic Coordinates Forward (+)

66307307 .. 66309149

Gene Structure 1843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0533000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGCACTTCCATGATTGCTTTGTCAGGGGCTGTGATGCTTCTGTGCTTGTGAACTCAACTTCGAGCAACCAAGCTGAAAAGGATGCTCCCCCAAATCTAACACTAAGAGGGTTTGACTTCATTGACAGAATAAAGAGCTTAGTTGAAGCTCAATGCCCTGGTGTAGTTTCATGTGCTGATGTTATTGCTTTGGCAGCAAGAGACTCTGTTGTAGCCACAGGAGGTCCTTTTTGGAATGTTCCTACAGGGAGAAGAGATGGAGTGATCTCAAGGTCATCAGAAGCTTTAGCAAGCATCCCATCCCCATTTAGCAACTTCACCACCCTCCAAACAAGTTTTGCTAATCAGGGTCTTGATTTGAAGGACTTGGTCCTGCTCTCTGGTGCTCACACCATTGGTGTCTCTCATTGCACATCGTTTACAAACCGTCTTTACAATTTCACTGGAAAAGGTGATCAAGACCCAGATTTAAACAGTCAATATGCAGCTAATCTCAAGGCAAAGAAATGCAAAAGTCTAAGTGATAACACAACAATAGTTGAGATGGACCCGGGAAGCCACAGGACATTCGACCTTAGCTACTACACACTCTTGCTTAAGAGAAGGGGACTTTTCCAATCTGATTCTGCTTTAACAAAAAGCTCAACCACTTACAACTATATCAAGCAGCTTCTTCAAGGTTCGAGTCAAAACTTCCATGCTGAATTTGCCAAGTCTATGGAGAAAATGGGTCGGGTTAAGATCAAGACGGGTTCATCTGGTCAGATTAGGAAGCATTGTGCAGTGGTGAATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

265

Amino Acids

28.83

Weight (kDa)

8.94

Isoelectric Point (pI)

36.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	1 - 224	1.4e-79	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630
fragaria_vesca	FvH4_2g39390 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420
malus_domestica	MD04G1049900.v1.1 MD06G1050000.v1.1 MD08G1026200.v1.1
prunus_persica	Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1
pyrus_communis	pycom04g04390 pycom06g04230 pycom06g04240 pycom08g02030
rosa_chinensis	RchiOBHm_Chr2g0168341 RchiOBHm_Chr3g0451061 RchiOBHm_Chr6g0301611
rosa_laevigata	RLG00000011239 RLG00000021768 RLG00000025695
rosa_multiflora	Rmu_co8487951.1_g000001 Rmu_sc0000078.1_g000004 Rmu_sc0016462.1_g000004 Rmu_ssc0000452.1_g000012
rosa_roxburghii	Rroxscaffold_2G00083130 Rroxscaffold_7G00166600
rosa_rugosa	Rorug02G0532800 Rorug02G0532900 Rorug02G0533000 Rorug02G0533000 Rorug02G0630800 Rorug06G0307200 Rorug06G0307300
rosa_samantha	Rh2AG602100 Rh2BG615400 Rh2CG583100 Rh2DG625600 Rh3AG033200 Rh3BG033500 Rh3CG032200 Rh3DG033200 Rh6AG420100 Rh6BG426200 Rh6CG433100 Rh6DG419500
rosa_wichuraiana	Rw0G019830 Rw2G049980 Rw3G002440 Rw6G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	704
AflII	CTTAAG	1 cut(s)	596
AgsI	TTSAA	3 cut(s)	146, 361, 677
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	9 cut(s)	74, 138, 149, 284, 488, 579, 642, 670, 795
AluI	AGCT	9 cut(s)	74, 138, 149, 284, 488, 579, 642, 670, 795
Alw21I	GWGCWC	1 cut(s)	388
Alw26I	GTCTC	2 cut(s)	195, 406
AlwNI	CAGNNNCTG	1 cut(s)	30
Ama87I	CYCGRG	1 cut(s)	550
ApeKI	GCWGC	3 cut(s)	194, 485, 667
ApoI	RAATTY	1 cut(s)	704
AspS9I	GGNCC	3 cut(s)	224, 370, 547
AsuC2I	CCSGG	2 cut(s)	551, 552
AsuHPI	GGTGA	2 cut(s)	310, 464
AvaI	CYCGRG	1 cut(s)	550
AvaII	GGWCC	3 cut(s)	224, 370, 547
Bbv12I	GWGCWC	1 cut(s)	388
BbvI	GCAGC	3 cut(s)	206, 497, 679
BccI	CCATC	3 cut(s)	251, 307, 538
BciT130I	CCWGG	1 cut(s)	159
BclI	TGATCA	1 cut(s)	454
BcnI	CCSGG	2 cut(s)	551, 552
BcoDI	GTCTC	2 cut(s)	195, 406
BfaI	CTAG	1 cut(s)	796
BfmI	CTRYAG	1 cut(s)	243
BfrI	CTTAAG	1 cut(s)	596
BisI	GCNGC	3 cut(s)	195, 486, 668
BlsI	GCNGC	3 cut(s)	196, 487, 669
Bme1390I	CCNGG	3 cut(s)	159, 551, 552
Bme18I	GGWCC	3 cut(s)	224, 370, 547
BmeT110I	CYCGRG	1 cut(s)	550
BmgT120I	GGNCC	3 cut(s)	224, 370, 547
BmiI	GGNNCC	1 cut(s)	549
BmrFI	CCNGG	3 cut(s)	159, 551, 552
BmsI	GCATC	3 cut(s)	25, 73, 303
Bpu10I	CCTNAGC	1 cut(s)	575
BpuEI	CTTGAG	2 cut(s)	253, 479
BpuMI	CCSGG	2 cut(s)	551, 552
BsaJI	CCNNGG	2 cut(s)	157, 550
Bse1I	ACTGG	1 cut(s)	448
Bse3DI	GCAATG	1 cut(s)	406
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	157, 550
BseGI	GGATG	3 cut(s)	88, 294, 299
BseMI	GCAATG	1 cut(s)	406
BseNI	ACTGG	1 cut(s)	448
BseXI	GCAGC	3 cut(s)	206, 497, 679
BsiHKAI	GWGCWC	1 cut(s)	388
BsiHKCI	CYCGRG	1 cut(s)	550
BsiSI	CCGG	1 cut(s)	551
BslFI	GGGAC	1 cut(s)	621
BsmAI	GTCTC	2 cut(s)	195, 406
BsmFI	GGGAC	1 cut(s)	621
BsoBI	CYCGRG	1 cut(s)	550
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp143I	GATC	3 cut(s)	264, 454, 741
BspLI	GGNNCC	1 cut(s)	549
BspTI	CTTAAG	1 cut(s)	596
BsrDI	GCAATG	1 cut(s)	406
BsrI	ACTGG	1 cut(s)	448
BssECI	CCNNGG	2 cut(s)	157, 550
BssMI	GATC	3 cut(s)	264, 454, 741
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	2 cut(s)	428, 476
Bst6I	CTCTTC	1 cut(s)	247
BstAFI	CTTAAG	1 cut(s)	596
BstC8I	GCNNGC	1 cut(s)	292
BstDEI	CTNAG	4 cut(s)	104, 139, 518, 575
BstF5I	GGATG	3 cut(s)	88, 294, 299
BstKTI	GATC	3 cut(s)	267, 457, 744
BstMAI	GTCTC	2 cut(s)	195, 406
BstMBI	GATC	3 cut(s)	264, 454, 741
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 707
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	3 cut(s)	157, 549, 550
BstSFI	CTRYAG	1 cut(s)	243
BstV1I	GCAGC	3 cut(s)	206, 497, 679
BstXI	CCANNNNNNTGG	1 cut(s)	718
BtsCI	GGATG	3 cut(s)	88, 294, 299
BtsI	GCAGTG	1 cut(s)	789
BtsIMutI	CAGTG	2 cut(s)	441, 789
Cac8I	GCNNGC	1 cut(s)	292
CaiI	CAGNNNCTG	1 cut(s)	30
Cfr13I	GGNCC	3 cut(s)	224, 370, 547
Cfr9I	CCCGGG	1 cut(s)	550
CviAII	CATG	3 cut(s)	11, 171, 698
DdeI	CTNAG	4 cut(s)	104, 139, 518, 575
DpnI	GATC	3 cut(s)	266, 456, 743
DpnII	GATC	3 cut(s)	264, 454, 741
DraI	TTTAAA	1 cut(s)	471
Eam1104I	CTCTTC	1 cut(s)	247
EarI	CTCTTC	1 cut(s)	247
Eco47I	GGWCC	3 cut(s)	224, 370, 547
Eco88I	CYCGRG	1 cut(s)	550
EcoO109I	RGGNCCY	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	157
FaeI	CATG	3 cut(s)	14, 174, 701
FaiI	YATR	6 cut(s)	12, 172, 483, 660, 699, 719
FaqI	GGGAC	1 cut(s)	621
FatI	CATG	3 cut(s)	10, 170, 697
FbaI	TGATCA	1 cut(s)	454
Fnu4HI	GCNGC	3 cut(s)	195, 486, 668
FokI	GGATG	3 cut(s)	95, 281, 286
Fsp4HI	GCNGC	3 cut(s)	195, 486, 668
FspBI	CTAG	1 cut(s)	796
GluI	GCNGC	3 cut(s)	195, 486, 668
HapII	CCGG	1 cut(s)	551
Hin1II	CATG	3 cut(s)	14, 174, 701
HindIII	AAGCTT	1 cut(s)	282
HinfI	GANTC	3 cut(s)	203, 623, 685
HpaII	CCGG	1 cut(s)	551
HphI	GGTGA	2 cut(s)	310, 464
Hpy166II	GTNNAC	2 cut(s)	52, 420
Hpy188I	TCNGA	3 cut(s)	280, 622, 765
Hpy188III	TCNNGA	3 cut(s)	353, 458, 745
Hpy8I	GTNNAC	2 cut(s)	52, 420
HpyAV	CCTTC	2 cut(s)	355, 597
HpyCH4III	ACNGT	2 cut(s)	428, 476
HpyCH4V	TGCA	5 cut(s)	4, 411, 485, 510, 782
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 707
HpyF3I	CTNAG	4 cut(s)	104, 139, 518, 575
Hsp92II	CATG	3 cut(s)	14, 174, 701
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	3 cut(s)	264, 454, 741
LmnI	GCTCC	1 cut(s)	91
Lsp1109I	GCAGC	3 cut(s)	206, 497, 679
LweI	GCATC	3 cut(s)	25, 73, 303
MaeI	CTAG	1 cut(s)	796
MalI	GATC	3 cut(s)	266, 456, 743
MboI	GATC	3 cut(s)	264, 454, 741
MboII	GAAGA	2 cut(s)	264, 665
MhlI	GDGCHC	1 cut(s)	388
MluCI	AATT	2 cut(s)	436, 704
MlyI	GAGTC	2 cut(s)	197, 694
MnlI	CCTC	3 cut(s)	101, 215, 335
MseI	TTAA	4 cut(s)	470, 597, 632, 738
MslI	CAYNNNNRTG	1 cut(s)	9
MspCI	CTTAAG	1 cut(s)	596
MspI	CCGG	1 cut(s)	551
MspR9I	CCNGG	3 cut(s)	159, 551, 552
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	2 cut(s)	194, 707
NciI	CCSGG	2 cut(s)	551, 552
NdeII	GATC	3 cut(s)	264, 454, 741
NlaIII	CATG	3 cut(s)	14, 174, 701
NlaIV	GGNNCC	1 cut(s)	549
PfeI	GAWTC	1 cut(s)	623
PflFI	GACNNNGTC	1 cut(s)	368
PkrI	GCNGC	3 cut(s)	196, 487, 669
PleI	GAGTC	2 cut(s)	197, 693
PpsI	GAGTC	2 cut(s)	197, 693
PpuMI	RGGWCCY	1 cut(s)	224
Psp5II	RGGWCCY	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	549
PspPI	GGNCC	3 cut(s)	224, 370, 547
PspPPI	RGGWCCY	1 cut(s)	224
PstNI	CAGNNNCTG	1 cut(s)	30
PsyI	GACNNNGTC	1 cut(s)	368
RseI	CAYNNNNRTG	1 cut(s)	9
SaqAI	TTAA	4 cut(s)	470, 597, 632, 738
SatI	GCNGC	3 cut(s)	195, 486, 668
Sau3AI	GATC	3 cut(s)	264, 454, 741
Sau96I	GGNCC	3 cut(s)	224, 370, 547
SchI	GAGTC	2 cut(s)	197, 694
ScrFI	CCNGG	3 cut(s)	159, 551, 552
SduI	GDGCHC	1 cut(s)	388
SfaNI	GCATC	3 cut(s)	25, 73, 303
SfcI	CTRYAG	1 cut(s)	243
SinI	GGWCC	3 cut(s)	224, 370, 547
SmaI	CCCGGG	1 cut(s)	552
SmiMI	CAYNNNNRTG	1 cut(s)	9
SmlI	CTYRAG	3 cut(s)	268, 494, 596
SmoI	CTYRAG	3 cut(s)	268, 494, 596
Sse9I	AATT	2 cut(s)	436, 704
SspMI	CTAG	1 cut(s)	796
StyD4I	CCNGG	3 cut(s)	157, 549, 550
TaaI	ACNGT	2 cut(s)	428, 476
TaqI	TCGA	3 cut(s)	62, 570, 683
TasI	AATT	2 cut(s)	436, 704
TfiI	GAWTC	1 cut(s)	623
Tru1I	TTAA	4 cut(s)	470, 597, 632, 738
Tru9I	TTAA	4 cut(s)	470, 597, 632, 738
TscAI	CASTG	2 cut(s)	448, 789
TseI	GCWGC	3 cut(s)	194, 485, 667
TspDTI	ATGAA	3 cut(s)	109, 159, 744
TspMI	CCCGGG	1 cut(s)	550
TspRI	CASTG	2 cut(s)	448, 789
Tth111I	GACNNNGTC	1 cut(s)	368
Vha464I	CTTAAG	1 cut(s)	596
VpaK11BI	GGWCC	3 cut(s)	224, 370, 547
XapI	RAATTY	1 cut(s)	704
XmaI	CCCGGG	1 cut(s)	550
XspI	CTAG	1 cut(s)	796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.