Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001147

Physical Location & Seq

Genomic Coordinates Reverse (-)

61344872 .. 61348095

Gene Structure 3224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG433100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGATGTTGTGCCACCAGTTTTATATGCGTCAATCTCACGCTAAGAATGGTTGGCAGACGGTGGCAACTGCGAGCATCTTTCTCGCATGCAAAGCAGAAGATACACCACGCTATCTGAATGATGTTGTTGTGGTGGCATATGAGATGGTGCACAAATTTGATTCATCTGCCTTGCACCGAATCAGACAAAAAGAATTTCTCAATAAGCAAAAGGAATTGATCCTAGTTGCGGAGAGACTTCTGCTGTCAACAATTGGCTTTGATCTGGACATTCAGCTTCCATACAAGATACTTGTTGCTGCTCTAAAGAGATTAGATCTTCTCCCTGACCTTGCTAAGGCGGCATGGAGTTTTGTGAACGATTGGCTTCGCACATCATTGTGCTTGCAGTACAAGCCCCATTACATTGCAGCTGGTTCGGTCGCTCTTGCTGCTAATTTTCAAAAGGTGAAACTACCTAAAGAGAAGGGAAAAGTTTGGTGGCTGGAGTTTGATGTTACTCCGAAACAGTTAGATGAGGTCATTCAGCGGATGCATAGTATGTTCAAGCCTCTACCAGCTAAAACTGGGAAGGCCGTTCAACCTGAAATTTTATCCAGAAAGCCAATTGATAGTAGCCCTCAATCATGTATTTCAAGTGAAGCAATGGTCGACCAGCATTCTAGGCATGGTGCCACTGTGGATGATAGAGGATTAGGAGGAGAGTCCGTTATGTCTACATGTAGGCAAAATCTTGGAGGTGAGAACAATCTTACTGGGAAGGATGCTTTACCATGCCAGACGAATAATAGGAGTATTATCAAGGATAGTGGTGGTGAGATCAAGCCAATAAGAGGGGAATTGGACGATCAGAGCACAAGATGCAAGATTCTTGATGTTCCTAAAAGCTGTGGTAAGATCGATATTAACCGTATTCGAGAATTGAAGAGGAGAAGATGTGATAAAGGTGTAAATAAGAAGTTGGCGGGCTCCATTACTGATGAGTTAGATCCTGAAGCCTGGATAGAAAGTGAGCTTGAAAACGTAGAGCTGGAAGATGCATCTGCAGCAAAGAAACAAAGGAAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

356

Amino Acids

40.08

Weight (kDa)

8.91

Isoelectric Point (pI)

48.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	3 - 89	6.3e-08	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630
fragaria_vesca	FvH4_2g39390 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420
malus_domestica	MD04G1049900.v1.1 MD06G1050000.v1.1 MD08G1026200.v1.1
prunus_persica	Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1
pyrus_communis	pycom04g04390 pycom06g04230 pycom06g04240 pycom08g02030
rosa_chinensis	RchiOBHm_Chr2g0168341 RchiOBHm_Chr3g0451061 RchiOBHm_Chr6g0301611
rosa_laevigata	RLG00000011239 RLG00000021768 RLG00000025695
rosa_multiflora	Rmu_co8487951.1_g000001 Rmu_sc0000078.1_g000004 Rmu_sc0016462.1_g000004 Rmu_ssc0000452.1_g000012
rosa_roxburghii	Rroxscaffold_2G00083130 Rroxscaffold_7G00166600
rosa_rugosa	Rorug02G0532800 Rorug02G0532900 Rorug02G0533000 Rorug02G0533000 Rorug02G0630800 Rorug06G0307200 Rorug06G0307300
rosa_samantha	Rh2AG602100 Rh2BG615400 Rh2CG583100 Rh2DG625600 Rh3AG033200 Rh3BG033500 Rh3CG032200 Rh3DG033200 Rh6AG420100 Rh6BG426200 Rh6CG433100 Rh6DG419500
rosa_wichuraiana	Rw0G019830 Rw2G049980 Rw3G002440 Rw6G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	671
AccI	GTMKAC	2 cut(s)	651, 716
AciI	CCGC	4 cut(s)	230, 341, 529, 965
AclWI	GGATC	2 cut(s)	214, 983
AcsI	RAATTY	3 cut(s)	155, 194, 588
AcuI	CTGAAG	1 cut(s)	1014
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	3 cut(s)	229, 337, 833
AflIII	ACRYGT	1 cut(s)	719
AgsI	TTSAA	6 cut(s)	443, 547, 581, 636, 925, 1019
AjnI	CCWGG	1 cut(s)	998
AluBI	AGCT	6 cut(s)	277, 413, 560, 888, 1015, 1030
AluI	AGCT	6 cut(s)	277, 413, 560, 888, 1015, 1030
Alw21I	GWGCWC	2 cut(s)	153, 857
Alw26I	GTCTC	1 cut(s)	229
Alw44I	GTGCAC	1 cut(s)	149
AlwI	GGATC	2 cut(s)	214, 983
AoxI	GGCC	1 cut(s)	573
ApaLI	GTGCAC	1 cut(s)	149
ApeKI	GCWGC	4 cut(s)	299, 410, 431, 1046
ApoI	RAATTY	3 cut(s)	155, 194, 588
AsuHPI	GGTGA	3 cut(s)	460, 752, 827
BaeGI	GKGCMC	1 cut(s)	153
BanI	GGYRCC	1 cut(s)	671
BanII	GRGCYC	1 cut(s)	971
Bbv12I	GWGCWC	2 cut(s)	153, 857
BbvI	GCAGC	4 cut(s)	286, 418, 422, 1058
BccI	CCATC	1 cut(s)	139
BceAI	ACGGC	1 cut(s)	560
BcgI	CGANNNNNNTGC	4 cut(s)	64, 98, 399, 433
BciT130I	CCWGG	1 cut(s)	1000
BcoDI	GTCTC	1 cut(s)	229
BfaI	CTAG	2 cut(s)	224, 663
BfmI	CTRYAG	1 cut(s)	1044
BglII	AGATCT	1 cut(s)	316
BisI	GCNGC	5 cut(s)	300, 342, 411, 432, 1047
BlsI	GCNGC	5 cut(s)	301, 343, 412, 433, 1048
Bme1390I	CCNGG	1 cut(s)	1000
BmiI	GGNNCC	2 cut(s)	673, 970
BmrFI	CCNGG	1 cut(s)	1000
BmrI	ACTGGG	2 cut(s)	576, 765
BmsI	GCATC	6 cut(s)	84, 522, 754, 851, 1027, 1049
BmuI	ACTGGG	2 cut(s)	576, 765
BpmI	CTGGAG	1 cut(s)	506
Bpu10I	CCTNAGC	1 cut(s)	336
Bsa29I	ATCGAT	1 cut(s)	900
BsaXI	ACNNNNNCTCC	4 cut(s)	693, 723, 922, 952
Bsc4I	CCNNNNNNNGG	3 cut(s)	229, 337, 833
Bse1I	ACTGG	3 cut(s)	16, 571, 760
Bse3DI	GCAATG	2 cut(s)	405, 651
BseBI	CCWGG	1 cut(s)	1000
BseCI	ATCGAT	1 cut(s)	900
BseGI	GGATG	3 cut(s)	537, 688, 769
BseLI	CCNNNNNNNGG	3 cut(s)	229, 337, 833
BseMI	GCAATG	2 cut(s)	405, 651
BseNI	ACTGG	3 cut(s)	16, 571, 760
BseRI	GAGGAG	2 cut(s)	714, 943
BseSI	GKGCMC	1 cut(s)	153
BseXI	GCAGC	4 cut(s)	286, 418, 422, 1058
Bsh1285I	CGRYCG	1 cut(s)	423
BshFI	GGCC	1 cut(s)	575
BshNI	GGYRCC	1 cut(s)	671
BshVI	ATCGAT	1 cut(s)	900
BsiEI	CGRYCG	1 cut(s)	423
BsiHKAI	GWGCWC	2 cut(s)	153, 857
BslI	CCNNNNNNNGG	3 cut(s)	229, 337, 833
BsmAI	GTCTC	1 cut(s)	229
BsmI	GAATGC	1 cut(s)	658
BsnI	GGCC	1 cut(s)	575
Bsp1286I	GDGCHC	3 cut(s)	153, 857, 971
Bsp143I	GATC	7 cut(s)	219, 262, 316, 819, 847, 897, 988
BspACI	CCGC	4 cut(s)	230, 341, 529, 965
BspANI	GGCC	1 cut(s)	575
BspDI	ATCGAT	1 cut(s)	900
BspLI	GGNNCC	2 cut(s)	673, 970
BspMAI	CTGCAG	1 cut(s)	1048
BspPI	GGATC	2 cut(s)	214, 983
BspT107I	GGYRCC	1 cut(s)	671
BsrDI	GCAATG	2 cut(s)	405, 651
BsrI	ACTGG	3 cut(s)	16, 571, 760
BssMI	GATC	7 cut(s)	219, 262, 316, 819, 847, 897, 988
Bst2UI	CCWGG	1 cut(s)	1000
Bst4CI	ACNGT	4 cut(s)	61, 510, 679, 911
Bst6I	CTCTTC	1 cut(s)	920
BstAPI	GCANNNNNTGC	1 cut(s)	861
BstC8I	GCNNGC	4 cut(s)	73, 88, 386, 967
BstDEI	CTNAG	3 cut(s)	42, 336, 1068
BstENI	CCTNNNNNAGG	1 cut(s)	335
BstF5I	GGATG	3 cut(s)	537, 688, 769
BstKTI	GATC	7 cut(s)	222, 265, 319, 822, 850, 900, 991
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	7 cut(s)	219, 262, 316, 819, 847, 897, 988
BstMCI	CGRYCG	1 cut(s)	423
BstMWI	GCNNNNNNNGC	7 cut(s)	92, 341, 394, 431, 664, 861, 1046
BstNI	CCWGG	1 cut(s)	1000
BstNSI	RCATGY	2 cut(s)	90, 723
BstSCI	CCNGG	1 cut(s)	998
BstSFI	CTRYAG	1 cut(s)	1044
BstSLI	GKGCMC	1 cut(s)	153
BstV1I	GCAGC	4 cut(s)	286, 418, 422, 1058
BstX2I	RGATCY	2 cut(s)	316, 988
BstYI	RGATCY	2 cut(s)	316, 988
Bsu15I	ATCGAT	1 cut(s)	900
BsuRI	GGCC	1 cut(s)	575
BsuTUI	ATCGAT	1 cut(s)	900
BtsCI	GGATG	3 cut(s)	537, 688, 769
BtsIMutI	CAGTG	1 cut(s)	675
Cac8I	GCNNGC	4 cut(s)	73, 88, 386, 967
ClaI	ATCGAT	1 cut(s)	900
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	391
CspCI	CAANNNNNGTGG	2 cut(s)	790, 825
CviAII	CATG	6 cut(s)	87, 345, 627, 668, 720, 774
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	3 cut(s)	42, 336, 1068
DpnI	GATC	7 cut(s)	221, 264, 318, 821, 849, 899, 990
DpnII	GATC	7 cut(s)	219, 262, 316, 819, 847, 897, 988
Eam1104I	CTCTTC	1 cut(s)	920
EarI	CTCTTC	1 cut(s)	920
Eco24I	GRGCYC	1 cut(s)	971
Eco57I	CTGAAG	1 cut(s)	1014
EcoNI	CCTNNNNNAGG	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	998
EcoT22I	ATGCAT	2 cut(s)	537, 1042
EcoT38I	GRGCYC	1 cut(s)	971
FaeI	CATG	6 cut(s)	90, 348, 630, 671, 723, 777
FalI	AAGNNNNNCTT	1 cut(s)	1051
FatI	CATG	6 cut(s)	86, 344, 626, 667, 719, 773
FauI	CCCGC	1 cut(s)	958
FauNDI	CATATG	1 cut(s)	139
FblI	GTMKAC	2 cut(s)	651, 716
Fnu4HI	GCNGC	5 cut(s)	300, 342, 411, 432, 1047
FokI	GGATG	3 cut(s)	544, 695, 776
FriOI	GRGCYC	1 cut(s)	971
Fsp4HI	GCNGC	5 cut(s)	300, 342, 411, 432, 1047
FspBI	CTAG	2 cut(s)	224, 663
GluI	GCNGC	5 cut(s)	300, 342, 411, 432, 1047
GsuI	CTGGAG	1 cut(s)	506
HaeIII	GGCC	1 cut(s)	575
HgaI	GACGC	1 cut(s)	17
Hin1II	CATG	6 cut(s)	90, 348, 630, 671, 723, 777
HincII	GTYRAC	2 cut(s)	249, 652
HindII	GTYRAC	2 cut(s)	249, 652
HinfI	GANTC	4 cut(s)	161, 180, 704, 868
HphI	GGTGA	3 cut(s)	460, 752, 827
Hpy166II	GTNNAC	5 cut(s)	151, 249, 358, 652, 717
Hpy188I	TCNGA	4 cut(s)	117, 185, 504, 852
Hpy188III	TCNNGA	5 cut(s)	266, 597, 872, 917, 992
Hpy8I	GTNNAC	5 cut(s)	151, 249, 358, 652, 717
HpyAV	CCTTC	4 cut(s)	460, 565, 754, 1057
HpyCH4III	ACNGT	4 cut(s)	61, 510, 679, 911
HpyCH4IV	ACGT	1 cut(s)	1023
HpyCH4V	TGCA	9 cut(s)	90, 151, 175, 388, 410, 535, 864, 1040, 1046
HpyF10VI	GCNNNNNNNGC	7 cut(s)	92, 341, 394, 431, 664, 861, 1046
HpyF3I	CTNAG	3 cut(s)	42, 336, 1068
HpySE526I	ACGT	1 cut(s)	1023
Hsp92II	CATG	6 cut(s)	90, 348, 630, 671, 723, 777
Kzo9I	GATC	7 cut(s)	219, 262, 316, 819, 847, 897, 988
LmnI	GCTCC	1 cut(s)	974
Lsp1109I	GCAGC	4 cut(s)	286, 418, 422, 1058
LweI	GCATC	6 cut(s)	84, 522, 754, 851, 1027, 1049
MaeI	CTAG	2 cut(s)	224, 663
MaeII	ACGT	1 cut(s)	1023
MaeIII	GTNAC	1 cut(s)	496
MalI	GATC	7 cut(s)	221, 264, 318, 821, 849, 899, 990
MboI	GATC	7 cut(s)	219, 262, 316, 819, 847, 897, 988
MboII	GAAGA	5 cut(s)	110, 311, 937, 945, 1046
MfeI	CAATTG	2 cut(s)	252, 606
MflI	RGATCY	2 cut(s)	316, 988
MhlI	GDGCHC	3 cut(s)	153, 857, 971
MluCI	AATT	9 cut(s)	155, 194, 215, 252, 436, 588, 606, 839, 920
MlyI	GAGTC	1 cut(s)	713
MnlI	CCTC	8 cut(s)	511, 561, 630, 683, 692, 731, 827, 921
Mph1103I	ATGCAT	2 cut(s)	537, 1042
MseI	TTAA	1 cut(s)	906
MslI	CAYNNNNRTG	1 cut(s)	379
MspA1I	CMGCKG	2 cut(s)	413, 529
MspR9I	CCNGG	1 cut(s)	1000
MunI	CAATTG	2 cut(s)	252, 606
Mva1269I	GAATGC	1 cut(s)	658
MvaI	CCWGG	1 cut(s)	1000
MwoI	GCNNNNNNNGC	7 cut(s)	92, 341, 394, 431, 664, 861, 1046
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	7 cut(s)	219, 262, 316, 819, 847, 897, 988
NlaIII	CATG	6 cut(s)	90, 348, 630, 671, 723, 777
NlaIV	GGNNCC	2 cut(s)	673, 970
NsiI	ATGCAT	2 cut(s)	537, 1042
NspI	RCATGY	2 cut(s)	90, 723
PaeI	GCATGC	1 cut(s)	90
PciI	ACATGT	1 cut(s)	719
PctI	GAATGC	1 cut(s)	658
PfeI	GAWTC	3 cut(s)	161, 180, 868
PkrI	GCNGC	5 cut(s)	301, 343, 412, 433, 1048
PleI	GAGTC	1 cut(s)	712
PpsI	GAGTC	1 cut(s)	712
PscI	ACATGT	1 cut(s)	719
Psp6I	CCWGG	1 cut(s)	998
PspGI	CCWGG	1 cut(s)	998
PspN4I	GGNNCC	2 cut(s)	673, 970
PstI	CTGCAG	1 cut(s)	1048
PsuI	RGATCY	2 cut(s)	316, 988
PvuII	CAGCTG	1 cut(s)	413
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
RseI	CAYNNNNRTG	1 cut(s)	379
SalI	GTCGAC	1 cut(s)	650
SaqAI	TTAA	1 cut(s)	906
SatI	GCNGC	5 cut(s)	300, 342, 411, 432, 1047
Sau3AI	GATC	7 cut(s)	219, 262, 316, 819, 847, 897, 988
SchI	GAGTC	1 cut(s)	713
ScrFI	CCNGG	1 cut(s)	1000
SduI	GDGCHC	3 cut(s)	153, 857, 971
SfaNI	GCATC	6 cut(s)	84, 522, 754, 851, 1027, 1049
SfcI	CTRYAG	1 cut(s)	1044
SmiMI	CAYNNNNRTG	1 cut(s)	379
SphI	GCATGC	1 cut(s)	90
Sse9I	AATT	9 cut(s)	155, 194, 215, 252, 436, 588, 606, 839, 920
SsiI	CCGC	4 cut(s)	230, 341, 529, 965
SspMI	CTAG	2 cut(s)	224, 663
StyD4I	CCNGG	1 cut(s)	998
TaaI	ACNGT	4 cut(s)	61, 510, 679, 911
TaiI	ACGT	1 cut(s)	1026
TaqI	TCGA	3 cut(s)	651, 900, 916
TaqII	GACCGA	1 cut(s)	409
TasI	AATT	9 cut(s)	155, 194, 215, 252, 436, 588, 606, 839, 920
TatI	WGTACW	1 cut(s)	390
TauI	GCSGC	1 cut(s)	344
TfiI	GAWTC	3 cut(s)	161, 180, 868
Tru1I	TTAA	1 cut(s)	906
Tru9I	TTAA	1 cut(s)	906
TscAI	CASTG	1 cut(s)	682
TseI	GCWGC	4 cut(s)	299, 410, 431, 1046
TspDTI	ATGAA	1 cut(s)	153
TspGWI	ACGGA	1 cut(s)	697
TspRI	CASTG	1 cut(s)	682
VneI	GTGCAC	1 cut(s)	149
XagI	CCTNNNNNAGG	1 cut(s)	335
XapI	RAATTY	3 cut(s)	155, 194, 588
XceI	RCATGY	2 cut(s)	90, 723
XmiI	GTMKAC	2 cut(s)	651, 716
XspI	CTAG	2 cut(s)	224, 663
Zsp2I	ATGCAT	2 cut(s)	537, 1042

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.