RLG00000021768

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
78047896 .. 78050678
2783 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021768

Sequence Viewer

Length: 1245 bp
ATGTGCACACCAGAAGAAGAACCACAGTGCCGTGGGTGGTATTTTACGAGGCAGGAGATAGAACATTGTTCTCCATCTCGGAGGGATGGGATTAGCAGGAAGAAAGAGACAGAATTGCGCGAGTTATATTGCTCGTATCTTAAAGAGCTTGGCATGAGGCTTGAATTGCCTCAGGTGACAATAGCATGTGCAATGATGTTGTGCCACCGATTTTTCTTGCGTCAATCTCATGCTAAGAATGATTGGAAGACAATTGCAACTGTAAGCATCTTTGTTGCTTGCAAAATACAAGATACACGGCGCCCTCTGAATGATGTTCTTCGTGAGGCATCTGATATGCTTCACAAATTGGATGCTTCTGCATTACCATATGTCAGACGAAAAGAAGTCTTCAAGGAATTGATTTTAGTTGCAGAGATACTGCTGTTGTCCACAATTGGTTTTGATTTTGAGATGAAGCTTCCGTACATGTCACTTGTTGAAGCTTTAAGGAGATTAGATCTTTTCCCTGTCCTTGCTGAGAGGGCATGGAATTATGTTAATGATTGCCTTTGCACATCATTGTGCTTGCAGTATGAGCCCAACTACATTGCAGCTGGTTCACTGTTTCTTGCTGCAGAAATAGAAAGAGTCAAACTTCCTGAAGAGGAGGGAAAAGTTTGGTGGGTGGAATTTGATATTTCGCCGAAACAGTTAGATGATGTCATTCAAGAGATGGTACGTAGTTTGCAGAAGGCAAGCAGAAAACAAGCTCTATCACCCAAAAATGGTGGGAAGGGAAATCAGTCTGAAACTTTAATAAGAAGGCCAAGTGATCCTAGTAGCTCTCAATCATGTGTTTCAAGTGAAGCAGTGGTTGATTGTCATTTTAGGCACAGCACCTTGGTGGAAGAGGACAGAGGACTAGGAGAGTCTATTATGTCTTGCGGCCAAAATGTTGTGGAAGGTGAAAACTGTACCACCATGAAGAAAGCTTTGTCATGTCACACACGTGATAGTGGCAGTCCAAGTGGCAATGTTGAGGATGGTGGTGCTGAGATCAAACCTGTCAGAGGGGAACCAGATGATCAGAACGATAATGCAATTGACATTGACCGGATTAGAGATAAATTGAAGAGGCGGAGATCAGGCGGTAAAGTTTTAAATAAGAAGACGGTGGATGCCACTGATGTAGAAGTAGATGCTGAAGCCTGGATAGAAAGTGAGCTTGAAGGTGGTATAGTGCTAGAAGATGCCTTCCCATAG

Protein Analysis

415

Amino Acids

46.88

Weight (kDa)

5.32

Isoelectric Point (pI)

70.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 14 - 150 7.2e-14 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 300
AccII CGCG 1 cut(s) 120
AciI CCGC 3 cut(s) 927, 1120, 1131
AclWI GGATC 1 cut(s) 809
AcoI YGGCCR 1 cut(s) 928
AcsI RAATTY 1 cut(s) 671
AcuI CTGAAG 2 cut(s) 663, 1206
AcvI CACGTG 1 cut(s) 992
AcyI GRCGYC 1 cut(s) 301
AfaI GTAC 3 cut(s) 467, 720, 958
AfiI CCNNNNNNNGG 2 cut(s) 767, 1052
AflIII ACRYGT 2 cut(s) 468, 989
AgsI TTSAA 7 cut(s) 164, 394, 482, 710, 843, 1114, 1211
AjnI CCWGG 1 cut(s) 1190
AleI CACNNNNGTG 2 cut(s) 884, 990
AluBI AGCT 8 cut(s) 148, 460, 485, 596, 752, 825, 974, 1207
AluI AGCT 8 cut(s) 148, 460, 485, 596, 752, 825, 974, 1207
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 101
Alw44I GTGCAC 1 cut(s) 4
AlwI GGATC 1 cut(s) 809
AoxI GGCC 2 cut(s) 806, 928
ApaLI GTGCAC 1 cut(s) 4
ApeKI GCWGC 2 cut(s) 593, 614
ApoI RAATTY 1 cut(s) 671
AspLEI GCGC 2 cut(s) 120, 303
AsuHPI GGTGA 3 cut(s) 187, 750, 959
AxyI CCTNAGG 1 cut(s) 171
BaeGI GKGCMC 1 cut(s) 8
BaeI ACNNNNGTAYC 2 cut(s) 410, 443
BanI GGYRCC 1 cut(s) 300
BanII GRGCYC 1 cut(s) 582
BarI GAAGNNNNNNTAC 2 cut(s) 449, 481
BbrPI CACGTG 1 cut(s) 992
BbsI GAAGAC 3 cut(s) 254, 382, 1157
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 601, 605
BccI CCATC 4 cut(s) 80, 82, 709, 1019
BceAI ACGGC 2 cut(s) 15, 314
BciT130I CCWGG 1 cut(s) 1192
BclI TGATCA 1 cut(s) 1066
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 3 cut(s) 819, 905, 1226
BfmI CTRYAG 1 cut(s) 615
BfoI RGCGCY 1 cut(s) 304
BglII AGATCT 1 cut(s) 499
BisI GCNGC 3 cut(s) 594, 615, 928
BlsI GCNGC 3 cut(s) 595, 616, 929
Bme1390I CCNGG 1 cut(s) 1192
BmiI GGNNCC 2 cut(s) 302, 1059
BmrFI CCNGG 1 cut(s) 1192
BmsI GCATC 6 cut(s) 276, 338, 343, 1150, 1171, 1222
BpiI GAAGAC 3 cut(s) 254, 382, 1157
BsaAI YACGTR 2 cut(s) 722, 992
BsaHI GRCGYC 1 cut(s) 301
BsaJI CCNNGG 2 cut(s) 31, 882
BsaWI WCCGGW 1 cut(s) 1095
Bsc4I CCNNNNNNNGG 2 cut(s) 767, 1052
Bse21I CCTNAGG 1 cut(s) 171
Bse3DI GCAATG 3 cut(s) 198, 588, 1021
BseBI CCWGG 1 cut(s) 1192
BseDI CCNNGG 2 cut(s) 31, 882
BseGI GGATG 4 cut(s) 91, 358, 1030, 1165
BseLI CCNNNNNNNGG 2 cut(s) 767, 1052
BseMI GCAATG 3 cut(s) 198, 588, 1021
BseMII CTCAG 3 cut(s) 185, 510, 1026
BseRI GAGGAG 1 cut(s) 662
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 2 cut(s) 601, 605
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 2 cut(s) 808, 930
BshNI GGYRCC 1 cut(s) 300
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 1 cut(s) 1096
BslI CCNNNNNNNGG 2 cut(s) 767, 1052
BsmAI GTCTC 1 cut(s) 101
BsnI GGCC 2 cut(s) 808, 930
Bsp1286I GDGCHC 2 cut(s) 8, 582
Bsp143I GATC 5 cut(s) 499, 814, 1038, 1066, 1124
BspACI CCGC 3 cut(s) 927, 1120, 1131
BspANI GGCC 2 cut(s) 808, 930
BspCNI CTCAG 3 cut(s) 184, 511, 1027
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 2 cut(s) 302, 1059
BspMAI CTGCAG 1 cut(s) 619
BspPI GGATC 1 cut(s) 809
BspT107I GGYRCC 1 cut(s) 300
BsrDI GCAATG 3 cut(s) 198, 588, 1021
BssECI CCNNGG 2 cut(s) 31, 882
BssMI GATC 5 cut(s) 499, 814, 1038, 1066, 1124
BssNI GRCGYC 1 cut(s) 301
BssT1I CCWWGG 1 cut(s) 882
Bst2UI CCWGG 1 cut(s) 1192
Bst4CI ACNGT 6 cut(s) 27, 262, 606, 693, 956, 1156
Bst6I CTCTTC 3 cut(s) 639, 885, 1109
BstACI GRCGYC 1 cut(s) 301
BstBAI YACGTR 2 cut(s) 722, 992
BstC8I GCNNGC 3 cut(s) 280, 569, 739
BstDEI CTNAG 4 cut(s) 171, 234, 519, 1035
BstDSI CCRYGG 1 cut(s) 31
BstENI CCTNNNNNAGG 1 cut(s) 1050
BstF5I GGATG 4 cut(s) 91, 358, 1030, 1165
BstFNI CGCG 1 cut(s) 120
BstH2I RGCGCY 1 cut(s) 304
BstHHI GCGC 2 cut(s) 120, 303
BstKTI GATC 5 cut(s) 502, 817, 1041, 1069, 1127
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 5 cut(s) 499, 814, 1038, 1066, 1124
BstMWI GCNNNNNNNGC 3 cut(s) 166, 524, 577
BstNI CCWGG 1 cut(s) 1192
BstNSI RCATGY 2 cut(s) 189, 472
BstSCI CCNGG 1 cut(s) 1190
BstSFI CTRYAG 1 cut(s) 615
BstSLI GKGCMC 1 cut(s) 8
BstSNI TACGTA 1 cut(s) 722
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 2 cut(s) 601, 605
BstV2I GAAGAC 3 cut(s) 254, 382, 1157
BstX2I RGATCY 1 cut(s) 499
BstYI RGATCY 1 cut(s) 499
Bsu36I CCTNAGG 1 cut(s) 171
BsuRI GGCC 2 cut(s) 808, 930
BtgI CCRYGG 1 cut(s) 31
BtsCI GGATG 4 cut(s) 91, 358, 1030, 1165
BtsI GCAGTG 1 cut(s) 858
BtsIMutI CAGTG 4 cut(s) 32, 602, 858, 1164
Cac8I GCNNGC 3 cut(s) 280, 569, 739
CfoI GCGC 2 cut(s) 120, 303
CseI GACGC 1 cut(s) 209
Csp6I GTAC 3 cut(s) 466, 719, 957
CspCI CAANNNNNGTGG 2 cut(s) 751, 786
CviAII CATG 8 cut(s) 154, 186, 230, 469, 528, 834, 964, 981
CviQI GTAC 3 cut(s) 466, 719, 957
DdeI CTNAG 4 cut(s) 171, 234, 519, 1035
DinI GGCGCC 1 cut(s) 302
DpnI GATC 5 cut(s) 501, 816, 1040, 1068, 1126
DpnII GATC 5 cut(s) 499, 814, 1038, 1066, 1124
DraI TTTAAA 1 cut(s) 1143
EaeI YGGCCR 1 cut(s) 928
Eam1104I CTCTTC 3 cut(s) 639, 885, 1109
EarI CTCTTC 3 cut(s) 639, 885, 1109
EciI GGCGGA 1 cut(s) 1135
Eco105I TACGTA 1 cut(s) 722
Eco130I CCWWGG 1 cut(s) 882
Eco24I GRGCYC 1 cut(s) 582
Eco57I CTGAAG 2 cut(s) 663, 1206
Eco72I CACGTG 1 cut(s) 992
Eco81I CCTNAGG 1 cut(s) 171
EcoNI CCTNNNNNAGG 1 cut(s) 1050
EcoRII CCWGG 1 cut(s) 1190
EcoT14I CCWWGG 1 cut(s) 882
EcoT38I GRGCYC 1 cut(s) 582
EgeI GGCGCC 1 cut(s) 302
EheI GGCGCC 1 cut(s) 302
ErhI CCWWGG 1 cut(s) 882
FaeI CATG 8 cut(s) 157, 189, 233, 472, 531, 837, 967, 984
FatI CATG 8 cut(s) 153, 185, 229, 468, 527, 833, 963, 980
FauNDI CATATG 1 cut(s) 370
FbaI TGATCA 1 cut(s) 1066
Fnu4HI GCNGC 3 cut(s) 594, 615, 928
FokI GGATG 4 cut(s) 98, 365, 1037, 1172
FriOI GRGCYC 1 cut(s) 582
Fsp4HI GCNGC 3 cut(s) 594, 615, 928
FspBI CTAG 3 cut(s) 819, 905, 1226
GlaI GCGC 2 cut(s) 119, 302
GluI GCNGC 3 cut(s) 594, 615, 928
HaeII RGCGCY 1 cut(s) 304
HaeIII GGCC 2 cut(s) 808, 930
HapII CCGG 1 cut(s) 1096
HgaI GACGC 1 cut(s) 209
HhaI GCGC 2 cut(s) 120, 303
Hin1I GRCGYC 1 cut(s) 301
Hin1II CATG 8 cut(s) 157, 189, 233, 472, 531, 837, 967, 984
Hin6I GCGC 2 cut(s) 118, 301
HinP1I GCGC 2 cut(s) 118, 301
HindIII AAGCTT 3 cut(s) 458, 483, 972
HinfI GANTC 2 cut(s) 630, 911
HpaII CCGG 1 cut(s) 1096
HphI GGTGA 3 cut(s) 187, 750, 959
Hpy166II GTNNAC 3 cut(s) 6, 432, 602
Hpy188I TCNGA 7 cut(s) 81, 309, 334, 377, 790, 1052, 1071
Hpy188III TCNNGA 3 cut(s) 323, 641, 710
Hpy8I GTNNAC 3 cut(s) 6, 432, 602
HpyAV CCTTC 5 cut(s) 727, 769, 798, 938, 1205
HpyCH4III ACNGT 6 cut(s) 27, 262, 606, 693, 956, 1156
HpyCH4IV ACGT 2 cut(s) 721, 991
HpyF10VI GCNNNNNNNGC 3 cut(s) 166, 524, 577
HpyF3I CTNAG 4 cut(s) 171, 234, 519, 1035
HpySE526I ACGT 2 cut(s) 721, 991
Hsp92I GRCGYC 1 cut(s) 301
Hsp92II CATG 8 cut(s) 157, 189, 233, 472, 531, 837, 967, 984
HspAI GCGC 2 cut(s) 118, 301
KasI GGCGCC 1 cut(s) 300
Ksp22I TGATCA 1 cut(s) 1066
Kzo9I GATC 5 cut(s) 499, 814, 1038, 1066, 1124
Lsp1109I GCAGC 2 cut(s) 601, 605
LweI GCATC 6 cut(s) 276, 338, 343, 1150, 1171, 1222
MaeI CTAG 3 cut(s) 819, 905, 1226
MaeII ACGT 2 cut(s) 721, 991
MaeIII GTNAC 3 cut(s) 175, 471, 983
MalI GATC 5 cut(s) 501, 816, 1040, 1068, 1126
MboI GATC 5 cut(s) 499, 814, 1038, 1066, 1124
MfeI CAATTG 3 cut(s) 252, 435, 1083
MflI RGATCY 1 cut(s) 499
MhlI GDGCHC 2 cut(s) 8, 582
Mly113I GGCGCC 1 cut(s) 301
MlyI GAGTC 2 cut(s) 639, 920
MseI TTAA 5 cut(s) 141, 488, 540, 797, 1142
MslI CAYNNNNRTG 3 cut(s) 562, 884, 990
MspA1I CMGCKG 1 cut(s) 596
MspI CCGG 1 cut(s) 1096
MspR9I CCNGG 1 cut(s) 1192
MunI CAATTG 3 cut(s) 252, 435, 1083
MvaI CCWGG 1 cut(s) 1192
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 3 cut(s) 166, 524, 577
NarI GGCGCC 1 cut(s) 301
NdeI CATATG 1 cut(s) 370
NdeII GATC 5 cut(s) 499, 814, 1038, 1066, 1124
NlaIII CATG 8 cut(s) 157, 189, 233, 472, 531, 837, 967, 984
NlaIV GGNNCC 2 cut(s) 302, 1059
NmuCI GTSAC 3 cut(s) 175, 471, 983
NspI RCATGY 2 cut(s) 189, 472
OliI CACNNNNGTG 2 cut(s) 884, 990
PciI ACATGT 1 cut(s) 468
PkrI GCNGC 3 cut(s) 595, 616, 929
PleI GAGTC 2 cut(s) 638, 919
PluTI GGCGCC 1 cut(s) 304
PmaCI CACGTG 1 cut(s) 992
PmlI CACGTG 1 cut(s) 992
PpsI GAGTC 2 cut(s) 638, 919
Ppu21I YACGTR 2 cut(s) 722, 992
PscI ACATGT 1 cut(s) 468
Psp6I CCWGG 1 cut(s) 1190
PspCI CACGTG 1 cut(s) 992
PspGI CCWGG 1 cut(s) 1190
PspN4I GGNNCC 2 cut(s) 302, 1059
PstI CTGCAG 1 cut(s) 619
PsuI RGATCY 1 cut(s) 499
PvuII CAGCTG 1 cut(s) 596
RsaI GTAC 3 cut(s) 467, 720, 958
RsaNI GTAC 3 cut(s) 466, 719, 957
RseI CAYNNNNRTG 3 cut(s) 562, 884, 990
SaqAI TTAA 5 cut(s) 141, 488, 540, 797, 1142
SatI GCNGC 3 cut(s) 594, 615, 928
Sau3AI GATC 5 cut(s) 499, 814, 1038, 1066, 1124
SchI GAGTC 2 cut(s) 639, 920
ScrFI CCNGG 1 cut(s) 1192
SduI GDGCHC 2 cut(s) 8, 582
SfaNI GCATC 6 cut(s) 276, 338, 343, 1150, 1171, 1222
SfcI CTRYAG 1 cut(s) 615
SfoI GGCGCC 1 cut(s) 302
SmiMI CAYNNNNRTG 3 cut(s) 562, 884, 990
SnaBI TACGTA 1 cut(s) 722
SsiI CCGC 3 cut(s) 927, 1120, 1131
SspDI GGCGCC 1 cut(s) 300
SspMI CTAG 3 cut(s) 819, 905, 1226
StyD4I CCNGG 1 cut(s) 1190
StyI CCWWGG 1 cut(s) 882
TaaI ACNGT 6 cut(s) 27, 262, 606, 693, 956, 1156
TaiI ACGT 2 cut(s) 724, 994
TauI GCSGC 1 cut(s) 930
Tru1I TTAA 5 cut(s) 141, 488, 540, 797, 1142
Tru9I TTAA 5 cut(s) 141, 488, 540, 797, 1142
TscAI CASTG 4 cut(s) 32, 609, 858, 1171
TseFI GTSAC 3 cut(s) 175, 471, 983
TseI GCWGC 2 cut(s) 593, 614
Tsp45I GTSAC 3 cut(s) 175, 471, 983
TspDTI ATGAA 2 cut(s) 470, 980
TspGWI ACGGA 1 cut(s) 453
TspRI CASTG 4 cut(s) 32, 609, 858, 1171
VneI GTGCAC 1 cut(s) 4
XagI CCTNNNNNAGG 1 cut(s) 1050
XapI RAATTY 1 cut(s) 671
XceI RCATGY 2 cut(s) 189, 472
XspI CTAG 3 cut(s) 819, 905, 1226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.