Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001147

Physical Location & Seq

Genomic Coordinates Forward (+)

45824262 .. 45825854

Gene Structure 1593 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0307200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGAGAGGATTTTGGATCAGAAGCTTGTTTCAAGCTGGTTTGACGTTCATCAATCCGTGCCCGAAACATATGTTTTCCCACCCGAAAAACGACCCGGCAAGCTCAACGTTCCCCTATGCAAAAGCATTCCAGTAGTTGATCTCGGGAGCCATGATCGCCGTGACACCATTCAGCAGATTTTCAAAGCCAGCCAAGACTTCGGCTTTTTCCAGGTTATCAACCATGGAGTTTCGAATAAGTTAATCGATGATACAATGAGTGTTTTCAAGGAGTTCCATGAAATGCCCTCCAAAGACAAGGCAAGAGAATGCTCCAAGGATCCAAGTCGAGACTGCAAGCTCTACACAAGCAGTGAAAACTACGCAAATGAAGAAGTTCACTACTGGAGAGATGCATTGACTCACCCTGGTCATACTTCAGAAAAATACCTGCAATATTGGCCTCAAAAACCAACTCAGTACCGAGATGTTGTGAAGCGGTATTTGGAGGAGGCGAGGAACTTGGGTGCTGTGATTCTGGAGCTGCTTGCTGAAGGGTTGGGACTTAGCGCTGAGTTCTTCAATGGTGGGCTTAGTGATAGTCCGATGCTGTTGTCGAATCATTATCCGCCGTGTCCGGATCCTAGCTTAACCTTGGGGTTAACCAAACACCGGGATCCTACCCTCATAACCATTTTGCTTCAAGATACAGAAGGGCTTCAAGTTTTCAAAGATGGGAATTGGATTGGGGTTGAGCCTGTTTCTACAGCTTTTGTGGTCAACATAGGCTATGTACTCCAGATTATCAGCAACTCAGAGTTTAAAGGTGCAGAACACAGAGTGGTGACTAATTCAAGAGTCGCAAGGACAACCATTGCTTACTTGATTTATCCTTCTAATGAGAACCTTATAGAACCTGCAAAAGCTCTATGCAACCAAAATCCGCCACTCTACCGATCGTTGACATTCAAGGAGTTCCTTAAAAACTTTAAGGCAAACTTTAAATCTAAAATCGACAGTACTGAAGCAGTGTTGCAGACTATAAGCCTCTCAGGTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

346

Amino Acids

39.25

Weight (kDa)

6.22

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	43 - 148	6.3e-20	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	195 - 289	1.1e-28	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630
fragaria_vesca	FvH4_2g39390 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420
malus_domestica	MD04G1049900.v1.1 MD06G1050000.v1.1 MD08G1026200.v1.1
prunus_persica	Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1
pyrus_communis	pycom04g04390 pycom06g04230 pycom06g04240 pycom08g02030
rosa_chinensis	RchiOBHm_Chr2g0168341 RchiOBHm_Chr3g0451061 RchiOBHm_Chr6g0301611
rosa_laevigata	RLG00000011239 RLG00000021768 RLG00000025695
rosa_multiflora	Rmu_co8487951.1_g000001 Rmu_sc0000078.1_g000004 Rmu_sc0016462.1_g000004 Rmu_ssc0000452.1_g000012
rosa_roxburghii	Rroxscaffold_2G00083130 Rroxscaffold_7G00166600
rosa_rugosa	Rorug02G0532800 Rorug02G0532900 Rorug02G0533000 Rorug02G0533000 Rorug02G0630800 Rorug06G0307200 Rorug06G0307300
rosa_samantha	Rh2AG602100 Rh2BG615400 Rh2CG583100 Rh2DG625600 Rh3AG033200 Rh3BG033500 Rh3CG032200 Rh3DG033200 Rh6AG420100 Rh6BG426200 Rh6CG433100 Rh6DG419500
rosa_wichuraiana	Rw0G019830 Rw2G049980 Rw3G002440 Rw6G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	438, 904
AccIII	TCCGGA	1 cut(s)	616
AciI	CCGC	3 cut(s)	478, 608, 923
AclI	AACGTT	1 cut(s)	108
AclWI	GGATC	7 cut(s)	24, 314, 327, 614, 627, 650, 663
AcuI	CTGAAG	3 cut(s)	402, 552, 1023
AdeI	CACNNNGTG	1 cut(s)	820
AfaI	GTAC	3 cut(s)	461, 774, 1000
AfeI	AGCGCT	1 cut(s)	550
AfiI	CCNNNNNNNGG	1 cut(s)	651
AgsI	TTSAA	9 cut(s)	33, 184, 268, 562, 683, 701, 709, 834, 949
AjnI	CCWGG	2 cut(s)	210, 406
AjuI	GAANNNNNNNTTGG	2 cut(s)	467, 499
AluBI	AGCT	9 cut(s)	25, 36, 103, 340, 523, 627, 749, 905, 1038
AluI	AGCT	9 cut(s)	25, 36, 103, 340, 523, 627, 749, 905, 1038
Alw26I	GTCTC	1 cut(s)	324
AlwI	GGATC	7 cut(s)	24, 314, 327, 614, 627, 650, 663
Ama87I	CYCGRG	1 cut(s)	143
Aor13HI	TCCGGA	1 cut(s)	616
Aor51HI	AGCGCT	1 cut(s)	550
AoxI	GGCC	1 cut(s)	440
ApeKI	GCWGC	1 cut(s)	523
Asp700I	GAANNNNTTC	2 cut(s)	375, 696
AspLEI	GCGC	1 cut(s)	551
AsuC2I	CCSGG	2 cut(s)	96, 653
AsuHPI	GGTGA	2 cut(s)	395, 835
AsuII	TTCGAA	1 cut(s)	233
AvaI	CYCGRG	1 cut(s)	143
BaeGI	GKGCMC	1 cut(s)	63
BamHI	GGATCC	3 cut(s)	319, 619, 655
BbvI	GCAGC	1 cut(s)	510
BccI	CCATC	1 cut(s)	707
BceAI	ACGGC	2 cut(s)	144, 595
BciT130I	CCWGG	2 cut(s)	212, 408
BcnI	CCSGG	2 cut(s)	96, 653
BcoDI	GTCTC	1 cut(s)	324
BfaI	CTAG	2 cut(s)	624, 1039
BfmI	CTRYAG	1 cut(s)	744
BfoI	RGCGCY	1 cut(s)	552
BfuAI	ACCTGC	2 cut(s)	438, 904
BisI	GCNGC	1 cut(s)	524
BlsI	GCNGC	1 cut(s)	525
BmcAI	AGTACT	1 cut(s)	1000
Bme1390I	CCNGG	4 cut(s)	96, 212, 408, 653
BmeT110I	CYCGRG	1 cut(s)	143
BmiI	GGNNCC	4 cut(s)	149, 321, 621, 657
BmrFI	CCNGG	4 cut(s)	96, 212, 408, 653
BmsI	GCATC	2 cut(s)	382, 576
BpmI	CTGGAG	3 cut(s)	406, 539, 761
Bpu14I	TTCGAA	1 cut(s)	233
BpuMI	CCSGG	2 cut(s)	96, 653
Bsa29I	ATCGAT	1 cut(s)	246
BsaJI	CCNNGG	4 cut(s)	223, 315, 406, 633
BsaWI	WCCGGW	1 cut(s)	616
Bsc4I	CCNNNNNNNGG	1 cut(s)	651
Bse1I	ACTGG	2 cut(s)	131, 389
Bse3DI	GCAATG	1 cut(s)	852
BseAI	TCCGGA	1 cut(s)	616
BseBI	CCWGG	2 cut(s)	212, 408
BseCI	ATCGAT	1 cut(s)	246
BseDI	CCNNGG	4 cut(s)	223, 315, 406, 633
BseLI	CCNNNNNNNGG	1 cut(s)	651
BseMI	GCAATG	1 cut(s)	852
BseMII	CTCAG	3 cut(s)	470, 543, 807
BseNI	ACTGG	2 cut(s)	131, 389
BseRI	GAGGAG	1 cut(s)	503
BseSI	GKGCMC	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	510
BsgI	GTGCAG	1 cut(s)	828
Bsh1285I	CGRYCG	1 cut(s)	938
BshFI	GGCC	1 cut(s)	442
BshVI	ATCGAT	1 cut(s)	246
BsiEI	CGRYCG	1 cut(s)	938
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	3 cut(s)	96, 617, 652
BslFI	GGGAC	1 cut(s)	555
BslI	CCNNNNNNNGG	1 cut(s)	651
BsmAI	GTCTC	1 cut(s)	324
BsmFI	GGGAC	1 cut(s)	555
BsmI	GAATGC	2 cut(s)	126, 314
BsnI	GGCC	1 cut(s)	442
BsoBI	CYCGRG	1 cut(s)	143
Bsp119I	TTCGAA	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp13I	TCCGGA	1 cut(s)	616
Bsp143I	GATC	7 cut(s)	16, 139, 154, 319, 619, 655, 935
Bsp19I	CCATGG	1 cut(s)	223
BspACI	CCGC	3 cut(s)	478, 608, 923
BspANI	GGCC	1 cut(s)	442
BspCNI	CTCAG	3 cut(s)	469, 544, 806
BspDI	ATCGAT	1 cut(s)	246
BspEI	TCCGGA	1 cut(s)	616
BspLI	GGNNCC	4 cut(s)	149, 321, 621, 657
BspMI	ACCTGC	2 cut(s)	438, 904
BspPI	GGATC	7 cut(s)	24, 314, 327, 614, 627, 650, 663
BspT104I	TTCGAA	1 cut(s)	233
BsrDI	GCAATG	1 cut(s)	852
BsrI	ACTGG	2 cut(s)	131, 389
BssECI	CCNNGG	4 cut(s)	223, 315, 406, 633
BssMI	GATC	7 cut(s)	16, 139, 154, 319, 619, 655, 935
BssT1I	CCWWGG	3 cut(s)	223, 315, 633
Bst2UI	CCWGG	2 cut(s)	212, 408
Bst4CI	ACNGT	1 cut(s)	998
BstBI	TTCGAA	1 cut(s)	233
BstC8I	GCNNGC	4 cut(s)	101, 190, 338, 528
BstDEI	CTNAG	6 cut(s)	456, 545, 552, 572, 793, 1030
BstDSI	CCRYGG	1 cut(s)	223
BstH2I	RGCGCY	1 cut(s)	552
BstHHI	GCGC	1 cut(s)	551
BstKTI	GATC	7 cut(s)	19, 142, 157, 322, 622, 658, 938
BstMAI	GTCTC	1 cut(s)	324
BstMBI	GATC	7 cut(s)	16, 139, 154, 319, 619, 655, 935
BstMCI	CGRYCG	1 cut(s)	938
BstMWI	GCNNNNNNNGC	2 cut(s)	156, 439
BstNI	CCWGG	2 cut(s)	212, 408
BstSCI	CCNGG	4 cut(s)	94, 210, 406, 651
BstSFI	CTRYAG	1 cut(s)	744
BstSLI	GKGCMC	1 cut(s)	63
BstV1I	GCAGC	1 cut(s)	510
BstX2I	RGATCY	3 cut(s)	319, 619, 655
BstYI	RGATCY	3 cut(s)	319, 619, 655
Bsu15I	ATCGAT	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	442
BsuTUI	ATCGAT	1 cut(s)	246
BtgI	CCRYGG	1 cut(s)	223
BtsI	GCAGTG	2 cut(s)	358, 1014
BtsIMutI	CAGTG	2 cut(s)	358, 1014
BveI	ACCTGC	2 cut(s)	438, 904
Cac8I	GCNNGC	4 cut(s)	101, 190, 338, 528
CfoI	GCGC	1 cut(s)	551
ClaI	ATCGAT	1 cut(s)	246
Csp6I	GTAC	3 cut(s)	460, 773, 999
CviAII	CATG	3 cut(s)	152, 224, 278
CviQI	GTAC	3 cut(s)	460, 773, 999
DdeI	CTNAG	6 cut(s)	456, 545, 552, 572, 793, 1030
DpnI	GATC	7 cut(s)	18, 141, 156, 321, 621, 657, 937
DpnII	GATC	7 cut(s)	16, 139, 154, 319, 619, 655, 935
DraI	TTTAAA	2 cut(s)	802, 982
DraIII	CACNNNGTG	1 cut(s)	820
EciI	GGCGGA	2 cut(s)	597, 912
Eco130I	CCWWGG	3 cut(s)	223, 315, 633
Eco47III	AGCGCT	1 cut(s)	550
Eco57I	CTGAAG	3 cut(s)	402, 552, 1023
Eco88I	CYCGRG	1 cut(s)	143
EcoRII	CCWGG	2 cut(s)	210, 406
EcoT14I	CCWWGG	3 cut(s)	223, 315, 633
EcoT22I	ATGCAT	1 cut(s)	397
ErhI	CCWWGG	3 cut(s)	223, 315, 633
FaeI	CATG	3 cut(s)	155, 227, 281
FalI	AAGNNNNNCTT	2 cut(s)	962, 994
FaqI	GGGAC	1 cut(s)	555
FatI	CATG	3 cut(s)	151, 223, 277
FauNDI	CATATG	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	524
Fsp4HI	GCNGC	1 cut(s)	524
FspBI	CTAG	2 cut(s)	624, 1039
GlaI	GCGC	1 cut(s)	550
GluI	GCNGC	1 cut(s)	524
GsuI	CTGGAG	3 cut(s)	406, 539, 761
HaeII	RGCGCY	1 cut(s)	552
HaeIII	GGCC	1 cut(s)	442
HapII	CCGG	3 cut(s)	96, 617, 652
HhaI	GCGC	1 cut(s)	551
Hin1II	CATG	3 cut(s)	155, 227, 281
Hin6I	GCGC	1 cut(s)	549
HinP1I	GCGC	1 cut(s)	549
HincII	GTYRAC	3 cut(s)	642, 760, 942
HindII	GTYRAC	3 cut(s)	642, 760, 942
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	4 cut(s)	400, 514, 598, 837
HpaI	GTTAAC	1 cut(s)	642
HpaII	CCGG	3 cut(s)	96, 617, 652
HphI	GGTGA	2 cut(s)	395, 835
Hpy166II	GTNNAC	4 cut(s)	379, 642, 760, 942
Hpy188I	TCNGA	4 cut(s)	21, 421, 585, 796
Hpy188III	TCNNGA	7 cut(s)	145, 329, 518, 617, 683, 778, 834
Hpy8I	GTNNAC	4 cut(s)	379, 642, 760, 942
HpyAV	CCTTC	3 cut(s)	527, 686, 882
HpyCH4III	ACNGT	1 cut(s)	998
HpyCH4IV	ACGT	2 cut(s)	45, 108
HpyCH4V	TGCA	8 cut(s)	120, 336, 395, 433, 809, 899, 912, 1015
HpyF10VI	GCNNNNNNNGC	2 cut(s)	156, 439
HpyF3I	CTNAG	6 cut(s)	456, 545, 552, 572, 793, 1030
HpySE526I	ACGT	2 cut(s)	45, 108
Hsp92II	CATG	3 cut(s)	155, 227, 281
HspAI	GCGC	1 cut(s)	549
Kpn2I	TCCGGA	1 cut(s)	616
KspAI	GTTAAC	1 cut(s)	642
Kzo9I	GATC	7 cut(s)	16, 139, 154, 319, 619, 655, 935
LmnI	GCTCC	3 cut(s)	147, 317, 520
Lsp1109I	GCAGC	1 cut(s)	510
LweI	GCATC	2 cut(s)	382, 576
MaeI	CTAG	2 cut(s)	624, 1039
MaeII	ACGT	2 cut(s)	45, 108
MaeIII	GTNAC	2 cut(s)	161, 823
MalI	GATC	7 cut(s)	18, 141, 156, 321, 621, 657, 937
MboI	GATC	7 cut(s)	16, 139, 154, 319, 619, 655, 935
MboII	GAAGA	2 cut(s)	383, 550
MflI	RGATCY	3 cut(s)	319, 619, 655
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	2 cut(s)	718, 829
MlyI	GAGTC	2 cut(s)	394, 846
MnlI	CCTC	7 cut(s)	298, 453, 481, 484, 489, 674, 1037
Mph1103I	ATGCAT	1 cut(s)	397
MroI	TCCGGA	1 cut(s)	616
MroXI	GAANNNNTTC	2 cut(s)	375, 696
MseI	TTAA	7 cut(s)	242, 629, 641, 801, 960, 969, 981
MspI	CCGG	3 cut(s)	96, 617, 652
MspR9I	CCNGG	4 cut(s)	96, 212, 408, 653
Mva1269I	GAATGC	2 cut(s)	126, 314
MvaI	CCWGG	2 cut(s)	212, 408
MwoI	GCNNNNNNNGC	2 cut(s)	156, 439
NciI	CCSGG	2 cut(s)	96, 653
NcoI	CCATGG	1 cut(s)	223
NdeI	CATATG	1 cut(s)	70
NdeII	GATC	7 cut(s)	16, 139, 154, 319, 619, 655, 935
NlaIII	CATG	3 cut(s)	155, 227, 281
NlaIV	GGNNCC	4 cut(s)	149, 321, 621, 657
NmuCI	GTSAC	2 cut(s)	161, 823
NsiI	ATGCAT	1 cut(s)	397
NspV	TTCGAA	1 cut(s)	233
PctI	GAATGC	2 cut(s)	126, 314
PdmI	GAANNNNTTC	2 cut(s)	375, 696
PfeI	GAWTC	2 cut(s)	514, 598
PkrI	GCNGC	1 cut(s)	525
Ple19I	CGATCG	1 cut(s)	938
PleI	GAGTC	2 cut(s)	394, 845
PpsI	GAGTC	2 cut(s)	394, 845
Psp1406I	AACGTT	1 cut(s)	108
Psp6I	CCWGG	2 cut(s)	210, 406
PspGI	CCWGG	2 cut(s)	210, 406
PspN4I	GGNNCC	4 cut(s)	149, 321, 621, 657
PsuI	RGATCY	3 cut(s)	319, 619, 655
PvuI	CGATCG	1 cut(s)	938
RsaI	GTAC	3 cut(s)	461, 774, 1000
RsaNI	GTAC	3 cut(s)	460, 773, 999
SaqAI	TTAA	7 cut(s)	242, 629, 641, 801, 960, 969, 981
SatI	GCNGC	1 cut(s)	524
Sau3AI	GATC	7 cut(s)	16, 139, 154, 319, 619, 655, 935
ScaI	AGTACT	1 cut(s)	1000
SchI	GAGTC	2 cut(s)	394, 846
ScrFI	CCNGG	4 cut(s)	96, 212, 408, 653
SduI	GDGCHC	1 cut(s)	63
SfaNI	GCATC	2 cut(s)	382, 576
SfcI	CTRYAG	1 cut(s)	744
SfuI	TTCGAA	1 cut(s)	233
Sse9I	AATT	2 cut(s)	718, 829
SsiI	CCGC	3 cut(s)	478, 608, 923
SspI	AATATT	1 cut(s)	437
SspMI	CTAG	2 cut(s)	624, 1039
StyD4I	CCNGG	4 cut(s)	94, 210, 406, 651
StyI	CCWWGG	3 cut(s)	223, 315, 633
TaaI	ACNGT	1 cut(s)	998
TaiI	ACGT	2 cut(s)	48, 111
TaqI	TCGA	5 cut(s)	233, 246, 328, 596, 993
TasI	AATT	2 cut(s)	718, 829
TatI	WGTACW	2 cut(s)	772, 998
TfiI	GAWTC	2 cut(s)	514, 598
Tru1I	TTAA	7 cut(s)	242, 629, 641, 801, 960, 969, 981
Tru9I	TTAA	7 cut(s)	242, 629, 641, 801, 960, 969, 981
TscAI	CASTG	2 cut(s)	358, 1014
TseFI	GTSAC	2 cut(s)	161, 823
TseI	GCWGC	1 cut(s)	523
Tsp45I	GTSAC	2 cut(s)	161, 823
TspDTI	ATGAA	3 cut(s)	38, 294, 384
TspGWI	ACGGA	1 cut(s)	46
TspRI	CASTG	2 cut(s)	358, 1014
XmnI	GAANNNNTTC	2 cut(s)	375, 696
XspI	CTAG	2 cut(s)	624, 1039
ZrmI	AGTACT	1 cut(s)	1000
Zsp2I	ATGCAT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.