Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001147

Physical Location & Seq

Genomic Coordinates Forward (+)

8002210 .. 8006433

Gene Structure 4224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00166600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGAGTATGGCGAGGCCGGTGCCTGAGAATCCTTCTGAGCAGGGAATTGCAAAAGCTTCGACAAGCATGTGCATTCCACAGGAGGCTCAGTGTCCTGTGAGAAAGTGGTATTTTACGAAACAGGAAATCGAAGACTCTCCGTCCCGGAGGGATGGCATTGGCACGAAGAAGGAGTCGCACTTGCGGAGTTTATACTGCTCGTTTCTTCAGGAGATTGGGATGAAGCTTAAAGTGCCTCAGCTGACAATATCATCTGCAATGATGTTGTGCCACCAGTTTTATATGCGTCAATCTCACGCTAAGAATGGTTGGCAGACGGTGGCAACTGCAAGCATCTTTCTCGCATGTAAAGCAGAAGATACACCACGCTATCTGAATGATGTTGTTGTGGTGGCATATGAGATGGTGCACAAATTTGATTCATCTGCCTTGCACCGAATCAGACAAAAAGAATTTCTCAATAAGCAAAAGGAATTGATCCTAGTTGCGGAGAGACTTCTGCTGTCAACAATTGGCTTTGATCTGGACATTCAGCTTCCATACAAGATACTTGTTGCTGCTCTAAAGAGATTAGATCTTCTCCCTGACCTAGCTAAGGCAGCATGGAGTTTTGTGAATGATTGGCTTCGCACATCATTGTGCTTGCAGTACAAGCCCCATTACATTGCTGCTGGTTCAGTCGCTCTTGCTGCTAATTTTCAAAAGGTGAAACTACCTAAAGAGAAGGGAAAAGTTTGGTGGCTGGAGTTTGATGTTACGCCGAAACAGTTAGATGAGGTCATTCAGCGGATGCATAGTATGTTCAAGCCTCTACCAGCTAAGACTGGGAAGGCCGTTCAACCTGAAACTTTATCCAGAAAGCCAATTGATAGTAGCCCTCAATCATGTATTTCAAGTGAAGCAATGGTAGACCAGCATTCTAGGCATGGTGCCACTGTGGATGATAGAGGATTAGGAGGAGAGTCTGTTATGTCTGCATGTAGGCAAAATCTTGGAGGTGAGAACAATCTTACTGGGAAGGATGCTTTACCATGCCAAACAAATAATAGGAGTATTGTCAAGGATAGTGGTGGTGAGATCAAGCCAATAAGAGGGGAATTGGACGATCAGAGCACAAGATGCAAGATTCTTGATGTTCCTAAAAGCTGTGGTAAGATTGATATTAACCGTATTCGAGAATTGAAGAGGAGAAGATGTGATAAAGGTGTAAATAAGAAGTTGGCGGGCTCCATTACTGATGAGTTAGATCCTGAAGCCTGGATAGAAAGTGAGCTTGAAAACGGAGTAGAGCTGGAAGATGCATCTGCAGCAAAGAAACAAAGGAAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

443

Amino Acids

49.72

Weight (kDa)

8.98

Isoelectric Point (pI)

56.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	36 - 175	3.1e-15	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630
fragaria_vesca	FvH4_2g39390 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420
malus_domestica	MD04G1049900.v1.1 MD06G1050000.v1.1 MD08G1026200.v1.1
prunus_persica	Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1
pyrus_communis	pycom04g04390 pycom06g04230 pycom06g04240 pycom08g02030
rosa_chinensis	RchiOBHm_Chr2g0168341 RchiOBHm_Chr3g0451061 RchiOBHm_Chr6g0301611
rosa_laevigata	RLG00000011239 RLG00000021768 RLG00000025695
rosa_multiflora	Rmu_co8487951.1_g000001 Rmu_sc0000078.1_g000004 Rmu_sc0016462.1_g000004 Rmu_ssc0000452.1_g000012
rosa_roxburghii	Rroxscaffold_2G00083130 Rroxscaffold_7G00166600
rosa_rugosa	Rorug02G0532800 Rorug02G0532900 Rorug02G0533000 Rorug02G0533000 Rorug02G0630800 Rorug06G0307200 Rorug06G0307300
rosa_samantha	Rh2AG602100 Rh2BG615400 Rh2CG583100 Rh2DG625600 Rh3AG033200 Rh3BG033500 Rh3CG032200 Rh3DG033200 Rh6AG420100 Rh6BG426200 Rh6CG433100 Rh6DG419500
rosa_wichuraiana	Rw0G019830 Rw2G049980 Rw3G002440 Rw6G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	19, 929
AccI	GTMKAC	1 cut(s)	909
AciI	CCGC	4 cut(s)	184, 488, 787, 1223
AclWI	GGATC	2 cut(s)	472, 1241
AcsI	RAATTY	2 cut(s)	413, 452
AcuI	CTGAAG	2 cut(s)	191, 1272
AfaI	GTAC	1 cut(s)	650
AfiI	CCNNNNNNNGG	3 cut(s)	487, 595, 1091
AgsI	TTSAA	6 cut(s)	701, 805, 839, 894, 1183, 1277
AhdI	GACNNNNNGTC	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	1256
AluBI	AGCT	9 cut(s)	56, 226, 241, 535, 593, 818, 1146, 1273, 1291
AluI	AGCT	9 cut(s)	56, 226, 241, 535, 593, 818, 1146, 1273, 1291
Alw21I	GWGCWC	2 cut(s)	411, 1115
Alw26I	GTCTC	1 cut(s)	487
Alw44I	GTGCAC	1 cut(s)	407
AlwI	GGATC	2 cut(s)	472, 1241
AoxI	GGCC	2 cut(s)	14, 831
ApaLI	GTGCAC	1 cut(s)	407
ApeKI	GCWGC	5 cut(s)	557, 599, 668, 689, 1307
ApoI	RAATTY	2 cut(s)	413, 452
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
AsuC2I	CCSGG	1 cut(s)	145
AsuHPI	GGTGA	3 cut(s)	718, 1010, 1085
BaeGI	GKGCMC	1 cut(s)	411
BanI	GGYRCC	2 cut(s)	19, 929
BanII	GRGCYC	1 cut(s)	1229
BbsI	GAAGAC	1 cut(s)	138
Bbv12I	GWGCWC	2 cut(s)	411, 1115
BbvCI	CCTCAGC	1 cut(s)	237
BbvI	GCAGC	5 cut(s)	544, 611, 655, 676, 1319
BccI	CCATC	2 cut(s)	146, 397
BceAI	ACGGC	1 cut(s)	818
BcgI	CGANNNNNNTGC	5 cut(s)	35, 39, 73, 322, 356
BciT130I	CCWGG	1 cut(s)	1258
BcnI	CCSGG	1 cut(s)	145
BcoDI	GTCTC	1 cut(s)	487
BfaI	CTAG	3 cut(s)	482, 590, 921
BfmI	CTRYAG	1 cut(s)	1305
BglII	AGATCT	1 cut(s)	574
BisI	GCNGC	5 cut(s)	558, 600, 669, 690, 1308
BlsI	GCNGC	5 cut(s)	559, 601, 670, 691, 1309
Bme1390I	CCNGG	2 cut(s)	145, 1258
BmeRI	GACNNNNNGTC	1 cut(s)	139
BmiI	GGNNCC	3 cut(s)	21, 931, 1228
BmrFI	CCNGG	2 cut(s)	145, 1258
BmrI	ACTGGG	2 cut(s)	834, 1023
BmsI	GCATC	6 cut(s)	342, 780, 1012, 1109, 1288, 1310
BmuI	ACTGGG	2 cut(s)	834, 1023
BpiI	GAAGAC	1 cut(s)	138
BpmI	CTGGAG	1 cut(s)	764
Bpu10I	CCTNAGC	2 cut(s)	237, 594
BpuMI	CCSGG	1 cut(s)	145
BsaXI	ACNNNNNCTCC	6 cut(s)	74, 104, 951, 981, 1180, 1210
Bsc4I	CCNNNNNNNGG	3 cut(s)	487, 595, 1091
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	3 cut(s)	274, 829, 1018
Bse3DI	GCAATG	3 cut(s)	264, 663, 909
BseBI	CCWGG	1 cut(s)	1258
BseGI	GGATG	5 cut(s)	157, 225, 795, 946, 1027
BseLI	CCNNNNNNNGG	3 cut(s)	487, 595, 1091
BseMI	GCAATG	3 cut(s)	264, 663, 909
BseMII	CTCAG	4 cut(s)	15, 27, 101, 251
BseNI	ACTGG	3 cut(s)	274, 829, 1018
BseRI	GAGGAG	2 cut(s)	972, 1201
BseSI	GKGCMC	1 cut(s)	411
BseXI	GCAGC	5 cut(s)	544, 611, 655, 676, 1319
BshFI	GGCC	2 cut(s)	16, 833
BshNI	GGYRCC	2 cut(s)	19, 929
BsiHKAI	GWGCWC	2 cut(s)	411, 1115
BsiSI	CCGG	2 cut(s)	17, 145
BslFI	GGGAC	1 cut(s)	127
BslI	CCNNNNNNNGG	3 cut(s)	487, 595, 1091
BsmAI	GTCTC	1 cut(s)	487
BsmFI	GGGAC	1 cut(s)	127
BsmI	GAATGC	2 cut(s)	72, 916
BsnI	GGCC	2 cut(s)	16, 833
Bsp1286I	GDGCHC	3 cut(s)	411, 1115, 1229
Bsp143I	GATC	6 cut(s)	477, 520, 574, 1077, 1105, 1246
BspACI	CCGC	4 cut(s)	184, 488, 787, 1223
BspANI	GGCC	2 cut(s)	16, 833
BspCNI	CTCAG	4 cut(s)	16, 28, 100, 250
BspLI	GGNNCC	3 cut(s)	21, 931, 1228
BspMAI	CTGCAG	1 cut(s)	1309
BspPI	GGATC	2 cut(s)	472, 1241
BspT107I	GGYRCC	2 cut(s)	19, 929
BsrDI	GCAATG	3 cut(s)	264, 663, 909
BsrFI	RCCGGY	1 cut(s)	16
BsrI	ACTGG	3 cut(s)	274, 829, 1018
BssAI	RCCGGY	1 cut(s)	16
BssMI	GATC	6 cut(s)	477, 520, 574, 1077, 1105, 1246
Bst2UI	CCWGG	1 cut(s)	1258
Bst4CI	ACNGT	4 cut(s)	319, 768, 937, 1169
Bst6I	CTCTTC	1 cut(s)	1178
BstAPI	GCANNNNNTGC	1 cut(s)	1119
BstC8I	GCNNGC	3 cut(s)	331, 644, 1225
BstDEI	CTNAG	8 cut(s)	24, 36, 87, 237, 300, 594, 819, 1329
BstENI	CCTNNNNNAGG	1 cut(s)	593
BstF5I	GGATG	5 cut(s)	157, 225, 795, 946, 1027
BstKTI	GATC	6 cut(s)	480, 523, 577, 1080, 1108, 1249
BstMAI	GTCTC	1 cut(s)	487
BstMBI	GATC	6 cut(s)	477, 520, 574, 1077, 1105, 1246
BstMWI	GCNNNNNNNGC	8 cut(s)	232, 350, 599, 652, 689, 922, 1119, 1307
BstNI	CCWGG	1 cut(s)	1258
BstNSI	RCATGY	3 cut(s)	70, 348, 981
BstSCI	CCNGG	2 cut(s)	143, 1256
BstSFI	CTRYAG	1 cut(s)	1305
BstSLI	GKGCMC	1 cut(s)	411
BstV1I	GCAGC	5 cut(s)	544, 611, 655, 676, 1319
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	2 cut(s)	574, 1246
BstYI	RGATCY	2 cut(s)	574, 1246
BsuRI	GGCC	2 cut(s)	16, 833
BtsCI	GGATG	5 cut(s)	157, 225, 795, 946, 1027
BtsIMutI	CAGTG	2 cut(s)	95, 933
Cac8I	GCNNGC	3 cut(s)	331, 644, 1225
Cfr10I	RCCGGY	1 cut(s)	16
CseI	GACGC	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	649
CspCI	CAANNNNNGTGG	2 cut(s)	1048, 1083
CviAII	CATG	7 cut(s)	67, 345, 603, 885, 926, 978, 1032
CviQI	GTAC	1 cut(s)	649
DdeI	CTNAG	8 cut(s)	24, 36, 87, 237, 300, 594, 819, 1329
DpnI	GATC	6 cut(s)	479, 522, 576, 1079, 1107, 1248
DpnII	GATC	6 cut(s)	477, 520, 574, 1077, 1105, 1246
DriI	GACNNNNNGTC	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	1178
Eam1105I	GACNNNNNGTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	1178
Eco24I	GRGCYC	1 cut(s)	1229
Eco57I	CTGAAG	2 cut(s)	191, 1272
EcoNI	CCTNNNNNAGG	1 cut(s)	593
EcoRII	CCWGG	1 cut(s)	1256
EcoT22I	ATGCAT	2 cut(s)	795, 1303
EcoT38I	GRGCYC	1 cut(s)	1229
FaeI	CATG	7 cut(s)	70, 348, 606, 888, 929, 981, 1035
FalI	AAGNNNNNCTT	1 cut(s)	1312
FaqI	GGGAC	1 cut(s)	127
FatI	CATG	7 cut(s)	66, 344, 602, 884, 925, 977, 1031
FauI	CCCGC	1 cut(s)	1216
FauNDI	CATATG	1 cut(s)	397
FblI	GTMKAC	1 cut(s)	909
Fnu4HI	GCNGC	5 cut(s)	558, 600, 669, 690, 1308
FokI	GGATG	5 cut(s)	164, 232, 802, 953, 1034
FriOI	GRGCYC	1 cut(s)	1229
Fsp4HI	GCNGC	5 cut(s)	558, 600, 669, 690, 1308
FspBI	CTAG	3 cut(s)	482, 590, 921
GluI	GCNGC	5 cut(s)	558, 600, 669, 690, 1308
GsuI	CTGGAG	1 cut(s)	764
HaeIII	GGCC	2 cut(s)	16, 833
HapII	CCGG	2 cut(s)	17, 145
HgaI	GACGC	1 cut(s)	275
Hin1II	CATG	7 cut(s)	70, 348, 606, 888, 929, 981, 1035
HincII	GTYRAC	1 cut(s)	507
HindII	GTYRAC	1 cut(s)	507
HindIII	AAGCTT	2 cut(s)	54, 224
HinfI	GANTC	7 cut(s)	28, 134, 173, 419, 438, 962, 1126
HpaII	CCGG	2 cut(s)	17, 145
HphI	GGTGA	3 cut(s)	718, 1010, 1085
Hpy166II	GTNNAC	3 cut(s)	409, 507, 910
Hpy188I	TCNGA	4 cut(s)	37, 375, 443, 1110
Hpy188III	TCNNGA	6 cut(s)	209, 524, 855, 1130, 1175, 1250
Hpy8I	GTNNAC	3 cut(s)	409, 507, 910
HpyAV	CCTTC	6 cut(s)	42, 163, 718, 823, 1012, 1318
HpyCH4III	ACNGT	4 cut(s)	319, 768, 937, 1169
HpyF10VI	GCNNNNNNNGC	8 cut(s)	232, 350, 599, 652, 689, 922, 1119, 1307
HpyF3I	CTNAG	8 cut(s)	24, 36, 87, 237, 300, 594, 819, 1329
Hsp92II	CATG	7 cut(s)	70, 348, 606, 888, 929, 981, 1035
Kzo9I	GATC	6 cut(s)	477, 520, 574, 1077, 1105, 1246
LmnI	GCTCC	1 cut(s)	1232
Lsp1109I	GCAGC	5 cut(s)	544, 611, 655, 676, 1319
LweI	GCATC	6 cut(s)	342, 780, 1012, 1109, 1288, 1310
MaeI	CTAG	3 cut(s)	482, 590, 921
MaeIII	GTNAC	1 cut(s)	754
MalI	GATC	6 cut(s)	479, 522, 576, 1079, 1107, 1248
MboI	GATC	6 cut(s)	477, 520, 574, 1077, 1105, 1246
MboII	GAAGA	8 cut(s)	143, 178, 197, 368, 569, 1195, 1203, 1307
MfeI	CAATTG	2 cut(s)	510, 864
MflI	RGATCY	2 cut(s)	574, 1246
MhlI	GDGCHC	3 cut(s)	411, 1115, 1229
MluCI	AATT	9 cut(s)	45, 413, 452, 473, 510, 694, 864, 1097, 1178
MlyI	GAGTC	3 cut(s)	128, 182, 971
Mph1103I	ATGCAT	2 cut(s)	795, 1303
MseI	TTAA	2 cut(s)	228, 1164
MslI	CAYNNNNRTG	1 cut(s)	637
MspA1I	CMGCKG	2 cut(s)	241, 787
MspI	CCGG	2 cut(s)	17, 145
MspR9I	CCNGG	2 cut(s)	145, 1258
MunI	CAATTG	2 cut(s)	510, 864
Mva1269I	GAATGC	2 cut(s)	72, 916
MvaI	CCWGG	1 cut(s)	1258
MwoI	GCNNNNNNNGC	8 cut(s)	232, 350, 599, 652, 689, 922, 1119, 1307
NciI	CCSGG	1 cut(s)	145
NdeI	CATATG	1 cut(s)	397
NdeII	GATC	6 cut(s)	477, 520, 574, 1077, 1105, 1246
NlaIII	CATG	7 cut(s)	70, 348, 606, 888, 929, 981, 1035
NlaIV	GGNNCC	3 cut(s)	21, 931, 1228
NsiI	ATGCAT	2 cut(s)	795, 1303
NspI	RCATGY	3 cut(s)	70, 348, 981
PctI	GAATGC	2 cut(s)	72, 916
PfeI	GAWTC	4 cut(s)	28, 419, 438, 1126
PfoI	TCCNGGA	1 cut(s)	143
PkrI	GCNGC	5 cut(s)	559, 601, 670, 691, 1309
PleI	GAGTC	3 cut(s)	128, 181, 970
PpsI	GAGTC	3 cut(s)	128, 181, 970
Psp6I	CCWGG	1 cut(s)	1256
PspGI	CCWGG	1 cut(s)	1256
PspN4I	GGNNCC	3 cut(s)	21, 931, 1228
PstI	CTGCAG	1 cut(s)	1309
PsuI	RGATCY	2 cut(s)	574, 1246
PvuII	CAGCTG	1 cut(s)	241
RsaI	GTAC	1 cut(s)	650
RsaNI	GTAC	1 cut(s)	649
RseI	CAYNNNNRTG	1 cut(s)	637
SaqAI	TTAA	2 cut(s)	228, 1164
SatI	GCNGC	5 cut(s)	558, 600, 669, 690, 1308
Sau3AI	GATC	6 cut(s)	477, 520, 574, 1077, 1105, 1246
SchI	GAGTC	3 cut(s)	128, 182, 971
ScrFI	CCNGG	2 cut(s)	145, 1258
SduI	GDGCHC	3 cut(s)	411, 1115, 1229
SfaNI	GCATC	6 cut(s)	342, 780, 1012, 1109, 1288, 1310
SfcI	CTRYAG	1 cut(s)	1305
SmiMI	CAYNNNNRTG	1 cut(s)	637
Sse9I	AATT	9 cut(s)	45, 413, 452, 473, 510, 694, 864, 1097, 1178
SsiI	CCGC	4 cut(s)	184, 488, 787, 1223
SspMI	CTAG	3 cut(s)	482, 590, 921
StyD4I	CCNGG	2 cut(s)	143, 1256
TaaI	ACNGT	4 cut(s)	319, 768, 937, 1169
TaqI	TCGA	3 cut(s)	59, 129, 1174
TasI	AATT	9 cut(s)	45, 413, 452, 473, 510, 694, 864, 1097, 1178
TatI	WGTACW	1 cut(s)	648
TfiI	GAWTC	4 cut(s)	28, 419, 438, 1126
Tru1I	TTAA	2 cut(s)	228, 1164
Tru9I	TTAA	2 cut(s)	228, 1164
TscAI	CASTG	2 cut(s)	95, 940
TseI	GCWGC	5 cut(s)	557, 599, 668, 689, 1307
TspDTI	ATGAA	2 cut(s)	236, 411
TspGWI	ACGGA	2 cut(s)	129, 1296
TspRI	CASTG	2 cut(s)	95, 940
VneI	GTGCAC	1 cut(s)	407
XagI	CCTNNNNNAGG	1 cut(s)	593
XapI	RAATTY	2 cut(s)	413, 452
XceI	RCATGY	3 cut(s)	70, 348, 981
XmiI	GTMKAC	1 cut(s)	909
XspI	CTAG	3 cut(s)	482, 590, 921
Zsp2I	ATGCAT	2 cut(s)	795, 1303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.