Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001147

Physical Location & Seq

Genomic Coordinates Reverse (-)

3972168 .. 3973118

Gene Structure 951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g04390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGGTGGAACTGGAAAGTGGTATTTCACAAAAGGGGAGATAGAAACGGAAACCCCATCTCGGAGGGACGGGATTAGCCGGATGAAAGAGTCGGAATTGCGGAGGTCTTACTGCTTGTTTCAGAGGGAGTTTGGGACGAAATTGAAGGTGGGTAGGGTTACGATTTCGACGGCGATGATGCTGTGCCACCAATTTTACATGCGGCAATCTCATGGCAAGAACGATTGGAAGATTGTTGCAACTTCAAGCATGCTTCTTGCTTGCAAATTAGTCGACGAAGTTAGGTTTTTGAATGACATTGTTTTCGTGGGGTACGAGATTGGGGAAAAATTCGAATCGAGTCAAAAGAGTAGTAGTGGTGGTAGTATTAGGCAGAGAGAGTTCTTCAGGAAGCAGAGGGATTTGATCTTGCTTGGGGAGAGACTTGTTATGCAAACAATCGGTTTTGAATTTGATCGAATTAAGCTTCCGTTCGATCCACTTACTTCGGCTCTAAAGAGATTGAATTGTAGTAGCTCTGGAGACCTTGGTATGTTGACTAAGAGTTTGATTGAGGAGTGCCTTCAAACCACATTGTGCTTGGAGTTCAAGCCCCATTGCATTGCAGCTGGTTCAGTGGCTGTTGCGGCTGAAATTCTCAAGGTACCGATACCATCTACCGGAGTACCTCAGATGAATGGAAAAGTTTGGTGGCATGAGTTTGAAGTTTCGCCACAGCAGTTACGTGAGGTTGTTCGGCGGATGCAAGGTATGTTAACAAGGAAGGCAGATGGAAAACAGGCTCTGTGTCGTCCACCACTACCCAAGTCAAACAATAGGAATAACAAGGTCATTCAGCATGAAATTTCATCTAGAAACCCAAGTGCAAGTTGCAGTAGCTCTCAGTCATGTGTTTCAATTGAAGCAACAGTTGATTCGCATCCTACGAAGAAACAAAGGACGTCGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

317

Amino Acids

35.68

Weight (kDa)

9.49

Isoelectric Point (pI)

56.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	15 - 149	1e-08	Cyclin, N-terminal domain
Cyclin_C	PF02984	173 - 262	5.4e-06	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630
fragaria_vesca	FvH4_2g39390 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420
malus_domestica	MD04G1049900.v1.1 MD06G1050000.v1.1 MD08G1026200.v1.1
prunus_persica	Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1
pyrus_communis	pycom04g04390 pycom06g04230 pycom06g04240 pycom08g02030
rosa_chinensis	RchiOBHm_Chr2g0168341 RchiOBHm_Chr3g0451061 RchiOBHm_Chr6g0301611
rosa_laevigata	RLG00000011239 RLG00000021768 RLG00000025695
rosa_multiflora	Rmu_co8487951.1_g000001 Rmu_sc0000078.1_g000004 Rmu_sc0016462.1_g000004 Rmu_ssc0000452.1_g000012
rosa_roxburghii	Rroxscaffold_2G00083130 Rroxscaffold_7G00166600
rosa_rugosa	Rorug02G0532800 Rorug02G0532900 Rorug02G0533000 Rorug02G0533000 Rorug02G0630800 Rorug06G0307200 Rorug06G0307300
rosa_samantha	Rh2AG602100 Rh2BG615400 Rh2CG583100 Rh2DG625600 Rh3AG033200 Rh3BG033500 Rh3CG032200 Rh3DG033200 Rh6AG420100 Rh6BG426200 Rh6CG433100 Rh6DG419500
rosa_wichuraiana	Rw0G019830 Rw2G049980 Rw3G002440 Rw6G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	944
Acc65I	GGTACC	1 cut(s)	643
AccB1I	GGYRCC	1 cut(s)	643
AccI	GTMKAC	1 cut(s)	273
AciI	CCGC	4 cut(s)	100, 202, 626, 739
AclWI	GGATC	1 cut(s)	470
AcsI	RAATTY	4 cut(s)	329, 449, 633, 843
AcuI	CTGAAG	1 cut(s)	370
AcyI	GRCGYC	1 cut(s)	941
AdeI	CACNNNGTG	1 cut(s)	576
AfaI	GTAC	3 cut(s)	314, 645, 666
AfiI	CCNNNNNNNGG	2 cut(s)	60, 659
AluBI	AGCT	4 cut(s)	466, 516, 608, 879
AluI	AGCT	4 cut(s)	466, 516, 608, 879
Alw26I	GTCTC	2 cut(s)	415, 516
AlwI	GGATC	1 cut(s)	470
AlwNI	CAGNNNCTG	2 cut(s)	620, 784
ApeKI	GCWGC	1 cut(s)	605
ApoI	RAATTY	4 cut(s)	329, 449, 633, 843
ArsI	GACNNNNNNTTYG	4 cut(s)	287, 319, 529, 561
Asp718I	GGTACC	1 cut(s)	643
AsuII	TTCGAA	1 cut(s)	333
BaeI	ACNNNNGTAYC	2 cut(s)	648, 681
BanI	GGYRCC	1 cut(s)	643
BbvI	GCAGC	1 cut(s)	617
BccI	CCATC	3 cut(s)	64, 661, 764
BceAI	ACGGC	1 cut(s)	186
BcgI	CGANNNNNNTGC	2 cut(s)	253, 287
BcoDI	GTCTC	2 cut(s)	415, 516
BfaI	CTAG	1 cut(s)	852
BisI	GCNGC	3 cut(s)	203, 606, 627
BlsI	GCNGC	3 cut(s)	204, 607, 628
BmiI	GGNNCC	1 cut(s)	645
BmsI	GCATC	3 cut(s)	168, 732, 928
BpmI	CTGGAG	1 cut(s)	540
Bpu14I	TTCGAA	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	623
BsaAI	YACGTR	1 cut(s)	725
BsaBI	GATNNNNATC	1 cut(s)	918
BsaHI	GRCGYC	1 cut(s)	941
BsaI	GGTCTC	1 cut(s)	516
BsaJI	CCNNGG	1 cut(s)	526
BsaWI	WCCGGW	1 cut(s)	659
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 659
Bse1I	ACTGG	1 cut(s)	16
Bse3DI	GCAATG	2 cut(s)	595, 600
Bse8I	GATNNNNATC	1 cut(s)	918
BseDI	CCNNGG	1 cut(s)	526
BseGI	GGATG	3 cut(s)	87, 747, 919
BseJI	GATNNNNATC	1 cut(s)	918
BseLI	CCNNNNNNNGG	2 cut(s)	60, 659
BseMI	GCAATG	2 cut(s)	595, 600
BseMII	CTCAG	2 cut(s)	683, 896
BseNI	ACTGG	1 cut(s)	16
BseRI	GAGGAG	1 cut(s)	569
BseXI	GCAGC	1 cut(s)	617
BshNI	GGYRCC	1 cut(s)	643
BsiSI	CCGG	2 cut(s)	79, 660
BslFI	GGGAC	2 cut(s)	80, 148
BslI	CCNNNNNNNGG	2 cut(s)	60, 659
BsmAI	GTCTC	2 cut(s)	415, 516
BsmFI	GGGAC	2 cut(s)	80, 148
Bso31I	GGTCTC	1 cut(s)	516
Bsp119I	TTCGAA	1 cut(s)	333
Bsp143I	GATC	3 cut(s)	405, 454, 475
BspACI	CCGC	4 cut(s)	100, 202, 626, 739
BspCNI	CTCAG	2 cut(s)	682, 895
BspLI	GGNNCC	1 cut(s)	645
BspPI	GGATC	1 cut(s)	470
BspT104I	TTCGAA	1 cut(s)	333
BspT107I	GGYRCC	1 cut(s)	643
BspTNI	GGTCTC	1 cut(s)	516
BsrDI	GCAATG	2 cut(s)	595, 600
BsrI	ACTGG	1 cut(s)	16
BssECI	CCNNGG	1 cut(s)	526
BssMI	GATC	3 cut(s)	405, 454, 475
BssNI	GRCGYC	1 cut(s)	941
BssT1I	CCWWGG	1 cut(s)	526
Bst4CI	ACNGT	1 cut(s)	910
BstACI	GRCGYC	1 cut(s)	941
BstBAI	YACGTR	1 cut(s)	725
BstBI	TTCGAA	1 cut(s)	333
BstC8I	GCNNGC	2 cut(s)	251, 262
BstDEI	CTNAG	3 cut(s)	540, 669, 882
BstF5I	GGATG	3 cut(s)	87, 747, 919
BstKTI	GATC	3 cut(s)	408, 457, 478
BstMAI	GTCTC	2 cut(s)	415, 516
BstMBI	GATC	3 cut(s)	405, 454, 475
BstMWI	GCNNNNNNNGC	1 cut(s)	626
BstNSI	RCATGY	2 cut(s)	202, 253
BstV1I	GCAGC	1 cut(s)	617
BtgZI	GCGATG	1 cut(s)	188
BtsCI	GGATG	3 cut(s)	87, 747, 919
BtsIMutI	CAGTG	1 cut(s)	621
Cac8I	GCNNGC	2 cut(s)	251, 262
CaiI	CAGNNNCTG	2 cut(s)	620, 784
Csp6I	GTAC	3 cut(s)	313, 644, 665
CviAII	CATG	6 cut(s)	199, 212, 250, 695, 839, 888
CviQI	GTAC	3 cut(s)	313, 644, 665
DdeI	CTNAG	3 cut(s)	540, 669, 882
DpnI	GATC	3 cut(s)	407, 456, 477
DpnII	GATC	3 cut(s)	405, 454, 475
DraIII	CACNNNGTG	1 cut(s)	576
EciI	GGCGGA	1 cut(s)	754
Eco130I	CCWWGG	1 cut(s)	526
Eco31I	GGTCTC	1 cut(s)	516
Eco57I	CTGAAG	1 cut(s)	370
EcoT14I	CCWWGG	1 cut(s)	526
ErhI	CCWWGG	1 cut(s)	526
FaeI	CATG	6 cut(s)	202, 215, 253, 698, 842, 891
FaiI	YATR	9 cut(s)	200, 213, 251, 431, 533, 696, 752, 840, 889
FaqI	GGGAC	2 cut(s)	80, 148
FatI	CATG	6 cut(s)	198, 211, 249, 694, 838, 887
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	3 cut(s)	203, 606, 627
FokI	GGATG	3 cut(s)	94, 754, 906
Fsp4HI	GCNGC	3 cut(s)	203, 606, 627
FspBI	CTAG	1 cut(s)	852
GluI	GCNGC	3 cut(s)	203, 606, 627
GsuI	CTGGAG	1 cut(s)	540
HapII	CCGG	2 cut(s)	79, 660
Hin1I	GRCGYC	1 cut(s)	941
Hin1II	CATG	6 cut(s)	202, 215, 253, 698, 842, 891
HincII	GTYRAC	3 cut(s)	274, 537, 756
HindII	GTYRAC	3 cut(s)	274, 537, 756
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	4 cut(s)	89, 335, 340, 914
HpaI	GTTAAC	1 cut(s)	756
HpaII	CCGG	2 cut(s)	79, 660
Hpy166II	GTNNAC	4 cut(s)	274, 537, 756, 794
Hpy188I	TCNGA	4 cut(s)	63, 94, 123, 672
Hpy188III	TCNNGA	3 cut(s)	388, 519, 852
Hpy8I	GTNNAC	4 cut(s)	274, 537, 756, 794
Hpy99I	CGWCG	3 cut(s)	172, 278, 946
HpyAV	CCTTC	3 cut(s)	139, 572, 757
HpyCH4III	ACNGT	1 cut(s)	910
HpyCH4IV	ACGT	2 cut(s)	724, 941
HpyCH4V	TGCA	8 cut(s)	239, 264, 433, 600, 605, 745, 866, 873
HpyF10VI	GCNNNNNNNGC	1 cut(s)	626
HpyF3I	CTNAG	3 cut(s)	540, 669, 882
HpySE526I	ACGT	2 cut(s)	724, 941
Hsp92I	GRCGYC	1 cut(s)	941
Hsp92II	CATG	6 cut(s)	202, 215, 253, 698, 842, 891
KpnI	GGTACC	1 cut(s)	647
KspAI	GTTAAC	1 cut(s)	756
Kzo9I	GATC	3 cut(s)	405, 454, 475
LpnPI	CCDG	6 cut(s)	92, 373, 504, 594, 673, 764
Lsp1109I	GCAGC	1 cut(s)	617
LweI	GCATC	3 cut(s)	168, 732, 928
MaeI	CTAG	1 cut(s)	852
MaeII	ACGT	2 cut(s)	724, 941
MaeIII	GTNAC	2 cut(s)	157, 720
MalI	GATC	3 cut(s)	407, 456, 477
MboI	GATC	3 cut(s)	405, 454, 475
MboII	GAAGA	3 cut(s)	241, 376, 940
MfeI	CAATTG	1 cut(s)	897
MlyI	GAGTC	2 cut(s)	98, 349
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	7 cut(s)	57, 96, 117, 390, 547, 678, 721
MseI	TTAA	2 cut(s)	462, 755
MspA1I	CMGCKG	1 cut(s)	608
MspI	CCGG	2 cut(s)	79, 660
MunI	CAATTG	1 cut(s)	897
MwoI	GCNNNNNNNGC	1 cut(s)	626
NdeII	GATC	3 cut(s)	405, 454, 475
NlaIII	CATG	6 cut(s)	202, 215, 253, 698, 842, 891
NlaIV	GGNNCC	1 cut(s)	645
NspI	RCATGY	2 cut(s)	202, 253
NspV	TTCGAA	1 cut(s)	333
PaeI	GCATGC	1 cut(s)	253
PcsI	WCGNNNNNNNCGW	2 cut(s)	312, 923
PfeI	GAWTC	2 cut(s)	335, 914
PkrI	GCNGC	3 cut(s)	204, 607, 628
PleI	GAGTC	2 cut(s)	97, 348
PpsI	GAGTC	2 cut(s)	97, 348
Ppu21I	YACGTR	1 cut(s)	725
PspN4I	GGNNCC	1 cut(s)	645
PstNI	CAGNNNCTG	2 cut(s)	620, 784
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	3 cut(s)	314, 645, 666
RsaNI	GTAC	3 cut(s)	313, 644, 665
SalI	GTCGAC	1 cut(s)	272
SaqAI	TTAA	2 cut(s)	462, 755
SatI	GCNGC	3 cut(s)	203, 606, 627
Sau3AI	GATC	3 cut(s)	405, 454, 475
SchI	GAGTC	2 cut(s)	98, 349
SfaNI	GCATC	3 cut(s)	168, 732, 928
SfuI	TTCGAA	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	638
SmoI	CTYRAG	1 cut(s)	638
SphI	GCATGC	1 cut(s)	253
SsiI	CCGC	4 cut(s)	100, 202, 626, 739
SspMI	CTAG	1 cut(s)	852
StyI	CCWWGG	1 cut(s)	526
TaaI	ACNGT	1 cut(s)	910
TaiI	ACGT	2 cut(s)	727, 944
TaqI	TCGA	6 cut(s)	167, 273, 333, 338, 457, 474
TauI	GCSGC	2 cut(s)	205, 629
TfiI	GAWTC	2 cut(s)	335, 914
Tru1I	TTAA	2 cut(s)	462, 755
Tru9I	TTAA	2 cut(s)	462, 755
TscAI	CASTG	1 cut(s)	621
TseI	GCWGC	1 cut(s)	605
TspDTI	ATGAA	4 cut(s)	98, 689, 837, 855
TspGWI	ACGGA	2 cut(s)	62, 459
TspRI	CASTG	1 cut(s)	621
XapI	RAATTY	4 cut(s)	329, 449, 633, 843
XbaI	TCTAGA	1 cut(s)	851
XceI	RCATGY	2 cut(s)	202, 253
XcmI	CCANNNNNNNNNTGG	1 cut(s)	577
XmiI	GTMKAC	1 cut(s)	273
XspI	CTAG	1 cut(s)	852
ZraI	GACGTC	1 cut(s)	942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.