Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00891

Orthogroup ID

OG0001147

Physical Location & Seq

Genomic Coordinates Forward (+)

24122 .. 26761

Gene Structure 2640 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G019830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGTGCACACCAGAAGAAGAACCACAGTGCCGTGGGTGGTATTTTACGAGGCAGGAGATAGAACATTGTTCTCCATCTCGGAGGGATGGGATTAGCAGGAAGAAAGAGACAGAATTGCGCGAGTTATATTGCTCGTATCTTAAAGAGCTTGGCATGAGGCTTGAATTGCCTCAGGTGACAATAGCATGTGCAATGATGTTGTGCCACCGATTTTTCATGCGTCAATCTCATGCTAAGAATGATTGGAAGACAATTGCAACTGTAAGCATCTTTGTTGCTTGCAAAATACAAGATACAAGGCGCCCTCTGAATGATGTTCTTCGTGAGGCATCTGATATGCTTCACAAATCGGATGCTTCTGCATTACCATATGTCAGACGAAAAGAAGTCTTCAAGGAATTGATTTTAGTTGCAGAGATACTTCTGTTGTCCACAATTGGTTTTGATTTTGAGATGAAGCTTCCGTACATGTCACTTGTTGAAGCTTTAAGGAGATTAGATCTTTTCTCTGCCCTTGCTGAGAGGGCATGGAATTATGTTAATGATTGCCTTTGCACATCATTGTGCTTGCAGTATGAGCCCAACTACATTGCAGCTGGTTCACTGTTTCTTGCTGCAGAAATAGAAAAAGTCAAACTTCCTAAAGATGAAGGAAAAGTTTGGTGGGCGGAATTTAATGTTTCGCCGAAACAGTTAGATGATGTCATTCAAGAGATGGTACGTAGTTTGCAGAAGGCAAGCAGAAAACAAGCTCCATCACCCAAAAATGGTGGGAAGGGAAATCAGTCTGAAACTTTAATAAGAAGGCCAAGTGATCCTAGTAGCTCTCAATCATGTGTTTCAAGTGAAGCAGTGGTTGATTGTCATTTTAGGCACAGCACCTTGGTGGAAGAGGACAGAGGACTAGGAGAGTCTATTATGTCTTGCGGCCAAAATGTTCTTTGTCATGTCACACATGTGATAGTGGCAGTCCAAGTGGCAATGTTGAGGATGGTGGTGCTGAGATCAAACCTGTTGGAGGGGAACCAGATTATCAGAACGATAATGCGATTGACATTGACCGGATTAGAGATAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

359

Amino Acids

40.95

Weight (kDa)

7.5

Isoelectric Point (pI)

65.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	14 - 150	4.9e-14	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630
fragaria_vesca	FvH4_2g39390 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420
malus_domestica	MD04G1049900.v1.1 MD06G1050000.v1.1 MD08G1026200.v1.1
prunus_persica	Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1
pyrus_communis	pycom04g04390 pycom06g04230 pycom06g04240 pycom08g02030
rosa_chinensis	RchiOBHm_Chr2g0168341 RchiOBHm_Chr3g0451061 RchiOBHm_Chr6g0301611
rosa_laevigata	RLG00000011239 RLG00000021768 RLG00000025695
rosa_multiflora	Rmu_co8487951.1_g000001 Rmu_sc0000078.1_g000004 Rmu_sc0016462.1_g000004 Rmu_ssc0000452.1_g000012
rosa_roxburghii	Rroxscaffold_2G00083130 Rroxscaffold_7G00166600
rosa_rugosa	Rorug02G0532800 Rorug02G0532900 Rorug02G0533000 Rorug02G0533000 Rorug02G0630800 Rorug06G0307200 Rorug06G0307300
rosa_samantha	Rh2AG602100 Rh2BG615400 Rh2CG583100 Rh2DG625600 Rh3AG033200 Rh3BG033500 Rh3CG032200 Rh3DG033200 Rh6AG420100 Rh6BG426200 Rh6CG433100 Rh6DG419500
rosa_wichuraiana	Rw0G019830 Rw2G049980 Rw3G002440 Rw6G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	300
AccII	CGCG	1 cut(s)	120
AciI	CCGC	2 cut(s)	668, 927
AclWI	GGATC	1 cut(s)	809
AcoI	YGGCCR	1 cut(s)	928
AcsI	RAATTY	1 cut(s)	671
AcyI	GRCGYC	1 cut(s)	301
AfaI	GTAC	2 cut(s)	467, 720
AfiI	CCNNNNNNNGG	2 cut(s)	767, 1018
AflIII	ACRYGT	2 cut(s)	468, 955
AgsI	TTSAA	5 cut(s)	164, 394, 482, 710, 843
AleI	CACNNNNGTG	2 cut(s)	884, 956
AluBI	AGCT	6 cut(s)	148, 460, 485, 596, 752, 825
AluI	AGCT	6 cut(s)	148, 460, 485, 596, 752, 825
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	101
Alw44I	GTGCAC	1 cut(s)	4
AlwI	GGATC	1 cut(s)	809
AoxI	GGCC	2 cut(s)	806, 928
ApaLI	GTGCAC	1 cut(s)	4
ApeKI	GCWGC	2 cut(s)	593, 614
ApoI	RAATTY	1 cut(s)	671
AspLEI	GCGC	2 cut(s)	120, 303
AsuHPI	GGTGA	2 cut(s)	187, 750
AxyI	CCTNAGG	1 cut(s)	171
BaeGI	GKGCMC	1 cut(s)	8
BaeI	ACNNNNGTAYC	2 cut(s)	410, 443
BanI	GGYRCC	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	582
BarI	GAAGNNNNNNTAC	2 cut(s)	449, 481
BbsI	GAAGAC	2 cut(s)	254, 382
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	601, 605
BccI	CCATC	5 cut(s)	80, 82, 709, 763, 985
BceAI	ACGGC	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	2 cut(s)	819, 905
BfmI	CTRYAG	1 cut(s)	615
BfoI	RGCGCY	1 cut(s)	304
BglII	AGATCT	1 cut(s)	499
BisI	GCNGC	3 cut(s)	594, 615, 928
BlsI	GCNGC	3 cut(s)	595, 616, 929
BmiI	GGNNCC	2 cut(s)	302, 1025
BmsI	GCATC	3 cut(s)	276, 338, 343
BpiI	GAAGAC	2 cut(s)	254, 382
BsaAI	YACGTR	1 cut(s)	722
BsaHI	GRCGYC	1 cut(s)	301
BsaJI	CCNNGG	2 cut(s)	31, 882
BsaWI	WCCGGW	1 cut(s)	1061
Bsc4I	CCNNNNNNNGG	2 cut(s)	767, 1018
Bse21I	CCTNAGG	1 cut(s)	171
Bse3DI	GCAATG	3 cut(s)	198, 588, 987
BseDI	CCNNGG	2 cut(s)	31, 882
BseGI	GGATG	3 cut(s)	91, 358, 996
BseLI	CCNNNNNNNGG	2 cut(s)	767, 1018
BseMI	GCAATG	3 cut(s)	198, 588, 987
BseMII	CTCAG	3 cut(s)	185, 510, 992
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	2 cut(s)	601, 605
Bsh1236I	CGCG	1 cut(s)	120
BshFI	GGCC	2 cut(s)	808, 930
BshNI	GGYRCC	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	1062
BslI	CCNNNNNNNGG	2 cut(s)	767, 1018
BsmAI	GTCTC	1 cut(s)	101
BsnI	GGCC	2 cut(s)	808, 930
Bsp1286I	GDGCHC	2 cut(s)	8, 582
Bsp143I	GATC	3 cut(s)	499, 814, 1004
BspACI	CCGC	2 cut(s)	668, 927
BspANI	GGCC	2 cut(s)	808, 930
BspCNI	CTCAG	3 cut(s)	184, 511, 993
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	2 cut(s)	302, 1025
BspMAI	CTGCAG	1 cut(s)	619
BspPI	GGATC	1 cut(s)	809
BspT107I	GGYRCC	1 cut(s)	300
BsrDI	GCAATG	3 cut(s)	198, 588, 987
BssECI	CCNNGG	2 cut(s)	31, 882
BssMI	GATC	3 cut(s)	499, 814, 1004
BssNI	GRCGYC	1 cut(s)	301
BssT1I	CCWWGG	1 cut(s)	882
Bst4CI	ACNGT	4 cut(s)	27, 262, 606, 693
Bst6I	CTCTTC	1 cut(s)	885
BstACI	GRCGYC	1 cut(s)	301
BstBAI	YACGTR	1 cut(s)	722
BstC8I	GCNNGC	3 cut(s)	280, 569, 739
BstDEI	CTNAG	4 cut(s)	171, 234, 519, 1001
BstDSI	CCRYGG	1 cut(s)	31
BstENI	CCTNNNNNAGG	1 cut(s)	1016
BstF5I	GGATG	3 cut(s)	91, 358, 996
BstFNI	CGCG	1 cut(s)	120
BstH2I	RGCGCY	1 cut(s)	304
BstHHI	GCGC	2 cut(s)	120, 303
BstKTI	GATC	3 cut(s)	502, 817, 1007
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	3 cut(s)	499, 814, 1004
BstMWI	GCNNNNNNNGC	3 cut(s)	166, 524, 577
BstNSI	RCATGY	3 cut(s)	189, 472, 959
BstSFI	CTRYAG	1 cut(s)	615
BstSLI	GKGCMC	1 cut(s)	8
BstSNI	TACGTA	1 cut(s)	722
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	2 cut(s)	601, 605
BstV2I	GAAGAC	2 cut(s)	254, 382
BstX2I	RGATCY	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	499
Bsu36I	CCTNAGG	1 cut(s)	171
BsuRI	GGCC	2 cut(s)	808, 930
BtgI	CCRYGG	1 cut(s)	31
BtsCI	GGATG	3 cut(s)	91, 358, 996
BtsI	GCAGTG	1 cut(s)	858
BtsIMutI	CAGTG	3 cut(s)	32, 602, 858
Cac8I	GCNNGC	3 cut(s)	280, 569, 739
CfoI	GCGC	2 cut(s)	120, 303
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	2 cut(s)	466, 719
CspCI	CAANNNNNGTGG	2 cut(s)	751, 786
CviAII	CATG	9 cut(s)	154, 186, 217, 230, 469, 528, 834, 947, 956
CviQI	GTAC	2 cut(s)	466, 719
DdeI	CTNAG	4 cut(s)	171, 234, 519, 1001
DinI	GGCGCC	1 cut(s)	302
DpnI	GATC	3 cut(s)	501, 816, 1006
DpnII	GATC	3 cut(s)	499, 814, 1004
EaeI	YGGCCR	1 cut(s)	928
Eam1104I	CTCTTC	1 cut(s)	885
EarI	CTCTTC	1 cut(s)	885
EciI	GGCGGA	1 cut(s)	683
Eco105I	TACGTA	1 cut(s)	722
Eco130I	CCWWGG	1 cut(s)	882
Eco24I	GRGCYC	1 cut(s)	582
Eco81I	CCTNAGG	1 cut(s)	171
EcoNI	CCTNNNNNAGG	1 cut(s)	1016
EcoT14I	CCWWGG	1 cut(s)	882
EcoT38I	GRGCYC	1 cut(s)	582
EgeI	GGCGCC	1 cut(s)	302
EheI	GGCGCC	1 cut(s)	302
ErhI	CCWWGG	1 cut(s)	882
FaeI	CATG	9 cut(s)	157, 189, 220, 233, 472, 531, 837, 950, 959
FalI	AAGNNNNNCTT	2 cut(s)	621, 653
FatI	CATG	9 cut(s)	153, 185, 216, 229, 468, 527, 833, 946, 955
FauNDI	CATATG	1 cut(s)	370
Fnu4HI	GCNGC	3 cut(s)	594, 615, 928
FokI	GGATG	3 cut(s)	98, 365, 1003
FriOI	GRGCYC	1 cut(s)	582
Fsp4HI	GCNGC	3 cut(s)	594, 615, 928
FspBI	CTAG	2 cut(s)	819, 905
GlaI	GCGC	2 cut(s)	119, 302
GluI	GCNGC	3 cut(s)	594, 615, 928
HaeII	RGCGCY	1 cut(s)	304
HaeIII	GGCC	2 cut(s)	808, 930
HapII	CCGG	1 cut(s)	1062
HgaI	GACGC	1 cut(s)	209
HhaI	GCGC	2 cut(s)	120, 303
Hin1I	GRCGYC	1 cut(s)	301
Hin1II	CATG	9 cut(s)	157, 189, 220, 233, 472, 531, 837, 950, 959
Hin6I	GCGC	2 cut(s)	118, 301
HinP1I	GCGC	2 cut(s)	118, 301
HindIII	AAGCTT	2 cut(s)	458, 483
HinfI	GANTC	1 cut(s)	911
HpaII	CCGG	1 cut(s)	1062
HphI	GGTGA	2 cut(s)	187, 750
Hpy166II	GTNNAC	3 cut(s)	6, 432, 602
Hpy188I	TCNGA	7 cut(s)	81, 309, 334, 352, 377, 790, 1037
Hpy188III	TCNNGA	2 cut(s)	323, 710
Hpy8I	GTNNAC	3 cut(s)	6, 432, 602
HpyAV	CCTTC	4 cut(s)	644, 727, 769, 798
HpyCH4III	ACNGT	4 cut(s)	27, 262, 606, 693
HpyCH4IV	ACGT	1 cut(s)	721
HpyF10VI	GCNNNNNNNGC	3 cut(s)	166, 524, 577
HpyF3I	CTNAG	4 cut(s)	171, 234, 519, 1001
HpySE526I	ACGT	1 cut(s)	721
Hsp92I	GRCGYC	1 cut(s)	301
Hsp92II	CATG	9 cut(s)	157, 189, 220, 233, 472, 531, 837, 950, 959
HspAI	GCGC	2 cut(s)	118, 301
KasI	GGCGCC	1 cut(s)	300
Kzo9I	GATC	3 cut(s)	499, 814, 1004
LmnI	GCTCC	1 cut(s)	757
LpnPI	CCDG	8 cut(s)	24, 38, 82, 158, 582, 1025, 1040, 1075
Lsp1109I	GCAGC	2 cut(s)	601, 605
LweI	GCATC	3 cut(s)	276, 338, 343
MaeI	CTAG	2 cut(s)	819, 905
MaeII	ACGT	1 cut(s)	721
MaeIII	GTNAC	3 cut(s)	175, 471, 949
MalI	GATC	3 cut(s)	501, 816, 1006
MboI	GATC	3 cut(s)	499, 814, 1004
MboII	GAAGA	7 cut(s)	26, 29, 112, 259, 311, 382, 902
MfeI	CAATTG	2 cut(s)	252, 435
MflI	RGATCY	1 cut(s)	499
MhlI	GDGCHC	2 cut(s)	8, 582
MluCI	AATT	8 cut(s)	113, 164, 252, 398, 435, 532, 671, 1075
Mly113I	GGCGCC	1 cut(s)	301
MlyI	GAGTC	1 cut(s)	920
MmeI	TCCRAC	1 cut(s)	996
MseI	TTAA	5 cut(s)	141, 488, 540, 675, 797
MslI	CAYNNNNRTG	3 cut(s)	562, 884, 956
MspA1I	CMGCKG	1 cut(s)	596
MspI	CCGG	1 cut(s)	1062
MunI	CAATTG	2 cut(s)	252, 435
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	3 cut(s)	166, 524, 577
NarI	GGCGCC	1 cut(s)	301
NdeI	CATATG	1 cut(s)	370
NdeII	GATC	3 cut(s)	499, 814, 1004
NlaIII	CATG	9 cut(s)	157, 189, 220, 233, 472, 531, 837, 950, 959
NlaIV	GGNNCC	2 cut(s)	302, 1025
NmuCI	GTSAC	3 cut(s)	175, 471, 949
NspI	RCATGY	3 cut(s)	189, 472, 959
OliI	CACNNNNGTG	2 cut(s)	884, 956
PciI	ACATGT	2 cut(s)	468, 955
PkrI	GCNGC	3 cut(s)	595, 616, 929
PleI	GAGTC	1 cut(s)	919
PluTI	GGCGCC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	919
Ppu21I	YACGTR	1 cut(s)	722
PscI	ACATGT	2 cut(s)	468, 955
PspN4I	GGNNCC	2 cut(s)	302, 1025
PstI	CTGCAG	1 cut(s)	619
PsuI	RGATCY	1 cut(s)	499
PvuII	CAGCTG	1 cut(s)	596
RsaI	GTAC	2 cut(s)	467, 720
RsaNI	GTAC	2 cut(s)	466, 719
RseI	CAYNNNNRTG	3 cut(s)	562, 884, 956
SaqAI	TTAA	5 cut(s)	141, 488, 540, 675, 797
SatI	GCNGC	3 cut(s)	594, 615, 928
Sau3AI	GATC	3 cut(s)	499, 814, 1004
SchI	GAGTC	1 cut(s)	920
SduI	GDGCHC	2 cut(s)	8, 582
SfaNI	GCATC	3 cut(s)	276, 338, 343
SfcI	CTRYAG	1 cut(s)	615
SfoI	GGCGCC	1 cut(s)	302
SmiMI	CAYNNNNRTG	3 cut(s)	562, 884, 956
SnaBI	TACGTA	1 cut(s)	722
Sse9I	AATT	8 cut(s)	113, 164, 252, 398, 435, 532, 671, 1075
SsiI	CCGC	2 cut(s)	668, 927
SspDI	GGCGCC	1 cut(s)	300
SspMI	CTAG	2 cut(s)	819, 905
StyI	CCWWGG	1 cut(s)	882
TaaI	ACNGT	4 cut(s)	27, 262, 606, 693
TaiI	ACGT	1 cut(s)	724
TasI	AATT	8 cut(s)	113, 164, 252, 398, 435, 532, 671, 1075
TauI	GCSGC	1 cut(s)	930
Tru1I	TTAA	5 cut(s)	141, 488, 540, 675, 797
Tru9I	TTAA	5 cut(s)	141, 488, 540, 675, 797
TscAI	CASTG	3 cut(s)	32, 609, 858
TseFI	GTSAC	3 cut(s)	175, 471, 949
TseI	GCWGC	2 cut(s)	593, 614
Tsp45I	GTSAC	3 cut(s)	175, 471, 949
TspDTI	ATGAA	3 cut(s)	205, 470, 663
TspGWI	ACGGA	1 cut(s)	453
TspRI	CASTG	3 cut(s)	32, 609, 858
VneI	GTGCAC	1 cut(s)	4
XagI	CCTNNNNNAGG	1 cut(s)	1016
XapI	RAATTY	1 cut(s)	671
XceI	RCATGY	3 cut(s)	189, 472, 959
XspI	CTAG	2 cut(s)	819, 905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.