Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001147

Physical Location & Seq

Genomic Coordinates Reverse (-)

64778379 .. 64781892

Gene Structure 3514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG426200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGCCCAACAGTTTTTGCATTTTATTTAGCTTTAGTAAGTATGCCTTTTTTATTTATGTGATTGTAAACATCTTACAGACGGTGGCAACTGCGAGCATCTTTCTCGCATGCAAAGCAGAAGATACACCACGCTATCTGAATGATGTTGTTGTGGTGGCATATGAGATGGTGCACAAATTTGATTCATCTGCCTTGCACCGAATCAGACAAAAAGAATTTCTCAATAAGCAAAAGGAATTGATCCTAGTTGCGGAGAGACTTCTGCTGTCAACAATTGGCTTTGATCTGGACATTCAGCTTCCATACAAGATACTTGTTGCTGCTCTAAAGAGATTAGATCTTCTCCCTGACCTTGCTAAGGCAGCATGGAGTTTTGTGAACGATTGGCTTCGCACATCATTGTGCTTGCAGTACAAGCCCCATTACATTGCAGCTGGTTCAGTCGCTCTTGCTGCTAATTTTCAAAAGGTGAAACTACCTAAAGAGAAGGGAAAAGTTTGGTGGCTGGAGTTTGATGTTACGCCGAAACAGTTAGATGAGGTTATTCAGCGGATGCATAGTATGTTCAAGCCTCTACCAGCTAAAACTGGGAAGGCCGTTCAACCTGAAATTTTATCCAGAAAGCCAATTGATAGTAGCCCTCAATCATGTATTTCAAGTGAAGCAATGGTAGACCAGCATTCTAGGCATGGTGCCACTGTGGATGATAGAGGATTAGGAGGAGAGTCTGTTATGTCTACATGTAGGCAAAATCTTGGAGGTGAGAACAATCTTACTGGGAAGGATGCTTTACCATGCCAGACGAATAATAGGAGTATTGTTAAGGATAGTGGTGGTGAGATCAAGCCAATAAGAGGGGAATTGGACGATCAGAGCACAAGATGCAAGATTCTCGATGTTCCTAAAAGCTGTGGTAAGATCGATATTAACCGTATTCGAGAATTGAAGAGGAGAAGATGTGATAAAGGTGTAAATAAGAAGTTGGCGGGCCCCATTACTGATGAGTTAGATCCTGAAGCCTGGATAGAAAGTGAGCTTGAAAACGGAGTAGAGCTGGAAGATGCATCTGCAGCAAAGAAACAAAGGAAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

364

Amino Acids

40.84

Weight (kDa)

8.82

Isoelectric Point (pI)

47.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630
fragaria_vesca	FvH4_2g39390 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420
malus_domestica	MD04G1049900.v1.1 MD06G1050000.v1.1 MD08G1026200.v1.1
prunus_persica	Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1
pyrus_communis	pycom04g04390 pycom06g04230 pycom06g04240 pycom08g02030
rosa_chinensis	RchiOBHm_Chr2g0168341 RchiOBHm_Chr3g0451061 RchiOBHm_Chr6g0301611
rosa_laevigata	RLG00000011239 RLG00000021768 RLG00000025695
rosa_multiflora	Rmu_co8487951.1_g000001 Rmu_sc0000078.1_g000004 Rmu_sc0016462.1_g000004 Rmu_ssc0000452.1_g000012
rosa_roxburghii	Rroxscaffold_2G00083130 Rroxscaffold_7G00166600
rosa_rugosa	Rorug02G0532800 Rorug02G0532900 Rorug02G0533000 Rorug02G0533000 Rorug02G0630800 Rorug06G0307200 Rorug06G0307300
rosa_samantha	Rh2AG602100 Rh2BG615400 Rh2CG583100 Rh2DG625600 Rh3AG033200 Rh3BG033500 Rh3CG032200 Rh3DG033200 Rh6AG420100 Rh6BG426200 Rh6CG433100 Rh6DG419500
rosa_wichuraiana	Rw0G019830 Rw2G049980 Rw3G002440 Rw6G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	692
AccI	GTMKAC	2 cut(s)	672, 737
AciI	CCGC	3 cut(s)	251, 550, 986
AclWI	GGATC	2 cut(s)	235, 1004
AcsI	RAATTY	3 cut(s)	176, 215, 609
AcuI	CTGAAG	1 cut(s)	1035
AfaI	GTAC	1 cut(s)	413
AfiI	CCNNNNNNNGG	3 cut(s)	250, 358, 854
AflIII	ACRYGT	1 cut(s)	740
AgsI	TTSAA	6 cut(s)	464, 568, 602, 657, 946, 1040
AjnI	CCWGG	1 cut(s)	1019
AluBI	AGCT	7 cut(s)	30, 298, 434, 581, 909, 1036, 1054
AluI	AGCT	7 cut(s)	30, 298, 434, 581, 909, 1036, 1054
Alw21I	GWGCWC	2 cut(s)	174, 878
Alw26I	GTCTC	1 cut(s)	250
Alw44I	GTGCAC	1 cut(s)	170
AlwI	GGATC	2 cut(s)	235, 1004
AoxI	GGCC	2 cut(s)	594, 988
ApaI	GGGCCC	1 cut(s)	992
ApaLI	GTGCAC	1 cut(s)	170
ApeKI	GCWGC	5 cut(s)	320, 362, 431, 452, 1070
ApoI	RAATTY	3 cut(s)	176, 215, 609
AspS9I	GGNCC	2 cut(s)	988, 989
AsuHPI	GGTGA	3 cut(s)	481, 773, 848
BaeGI	GKGCMC	2 cut(s)	174, 992
BanI	GGYRCC	1 cut(s)	692
BanII	GRGCYC	1 cut(s)	992
Bbv12I	GWGCWC	2 cut(s)	174, 878
BbvI	GCAGC	5 cut(s)	307, 374, 439, 443, 1082
BccI	CCATC	1 cut(s)	160
BceAI	ACGGC	1 cut(s)	581
BcgI	CGANNNNNNTGC	4 cut(s)	85, 119, 874, 908
BciT130I	CCWGG	1 cut(s)	1021
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	2 cut(s)	245, 684
BfmI	CTRYAG	1 cut(s)	1068
BglII	AGATCT	1 cut(s)	337
BisI	GCNGC	5 cut(s)	321, 363, 432, 453, 1071
BlsI	GCNGC	5 cut(s)	322, 364, 433, 454, 1072
Bme1390I	CCNGG	1 cut(s)	1021
BmgT120I	GGNCC	2 cut(s)	988, 989
BmiI	GGNNCC	3 cut(s)	694, 990, 991
BmrFI	CCNGG	1 cut(s)	1021
BmrI	ACTGGG	2 cut(s)	597, 786
BmsI	GCATC	6 cut(s)	105, 543, 775, 872, 1051, 1073
BmuI	ACTGGG	2 cut(s)	597, 786
BpmI	CTGGAG	1 cut(s)	527
Bpu10I	CCTNAGC	1 cut(s)	357
Bsa29I	ATCGAT	1 cut(s)	921
BsaXI	ACNNNNNCTCC	4 cut(s)	714, 744, 943, 973
Bsc4I	CCNNNNNNNGG	3 cut(s)	250, 358, 854
Bse1I	ACTGG	2 cut(s)	592, 781
Bse3DI	GCAATG	2 cut(s)	426, 672
BseBI	CCWGG	1 cut(s)	1021
BseCI	ATCGAT	1 cut(s)	921
BseGI	GGATG	3 cut(s)	558, 709, 790
BseLI	CCNNNNNNNGG	3 cut(s)	250, 358, 854
BseMI	GCAATG	2 cut(s)	426, 672
BseNI	ACTGG	2 cut(s)	592, 781
BseRI	GAGGAG	2 cut(s)	735, 964
BseSI	GKGCMC	2 cut(s)	174, 992
BseXI	GCAGC	5 cut(s)	307, 374, 439, 443, 1082
BshFI	GGCC	2 cut(s)	596, 990
BshNI	GGYRCC	1 cut(s)	692
BshVI	ATCGAT	1 cut(s)	921
BsiHKAI	GWGCWC	2 cut(s)	174, 878
BslI	CCNNNNNNNGG	3 cut(s)	250, 358, 854
BsmAI	GTCTC	1 cut(s)	250
BsmI	GAATGC	1 cut(s)	679
BsnI	GGCC	2 cut(s)	596, 990
Bsp120I	GGGCCC	1 cut(s)	988
Bsp1286I	GDGCHC	3 cut(s)	174, 878, 992
Bsp143I	GATC	7 cut(s)	240, 283, 337, 840, 868, 918, 1009
BspACI	CCGC	3 cut(s)	251, 550, 986
BspANI	GGCC	2 cut(s)	596, 990
BspDI	ATCGAT	1 cut(s)	921
BspLI	GGNNCC	3 cut(s)	694, 990, 991
BspMAI	CTGCAG	1 cut(s)	1072
BspPI	GGATC	2 cut(s)	235, 1004
BspT107I	GGYRCC	1 cut(s)	692
BsrDI	GCAATG	2 cut(s)	426, 672
BsrI	ACTGG	2 cut(s)	592, 781
BssMI	GATC	7 cut(s)	240, 283, 337, 840, 868, 918, 1009
Bst2UI	CCWGG	1 cut(s)	1021
Bst4CI	ACNGT	5 cut(s)	11, 82, 531, 700, 932
Bst6I	CTCTTC	1 cut(s)	941
BstAPI	GCANNNNNTGC	1 cut(s)	882
BstC8I	GCNNGC	4 cut(s)	94, 109, 407, 988
BstDEI	CTNAG	2 cut(s)	357, 1092
BstENI	CCTNNNNNAGG	1 cut(s)	356
BstF5I	GGATG	3 cut(s)	558, 709, 790
BstKTI	GATC	7 cut(s)	243, 286, 340, 843, 871, 921, 1012
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	7 cut(s)	240, 283, 337, 840, 868, 918, 1009
BstMWI	GCNNNNNNNGC	7 cut(s)	113, 362, 415, 452, 685, 882, 1070
BstNI	CCWGG	1 cut(s)	1021
BstNSI	RCATGY	2 cut(s)	111, 744
BstSCI	CCNGG	1 cut(s)	1019
BstSFI	CTRYAG	1 cut(s)	1068
BstSLI	GKGCMC	2 cut(s)	174, 992
BstV1I	GCAGC	5 cut(s)	307, 374, 439, 443, 1082
BstX2I	RGATCY	2 cut(s)	337, 1009
BstYI	RGATCY	2 cut(s)	337, 1009
Bsu15I	ATCGAT	1 cut(s)	921
BsuRI	GGCC	2 cut(s)	596, 990
BsuTUI	ATCGAT	1 cut(s)	921
BtsCI	GGATG	3 cut(s)	558, 709, 790
BtsIMutI	CAGTG	1 cut(s)	696
Cac8I	GCNNGC	4 cut(s)	94, 109, 407, 988
Cfr13I	GGNCC	2 cut(s)	988, 989
ClaI	ATCGAT	1 cut(s)	921
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	6 cut(s)	108, 366, 648, 689, 741, 795
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	2 cut(s)	357, 1092
DpnI	GATC	7 cut(s)	242, 285, 339, 842, 870, 920, 1011
DpnII	GATC	7 cut(s)	240, 283, 337, 840, 868, 918, 1009
Eam1104I	CTCTTC	1 cut(s)	941
EarI	CTCTTC	1 cut(s)	941
Eco24I	GRGCYC	1 cut(s)	992
Eco57I	CTGAAG	1 cut(s)	1035
EcoNI	CCTNNNNNAGG	1 cut(s)	356
EcoO109I	RGGNCCY	1 cut(s)	989
EcoRII	CCWGG	1 cut(s)	1019
EcoT22I	ATGCAT	2 cut(s)	558, 1066
EcoT38I	GRGCYC	1 cut(s)	992
FaeI	CATG	6 cut(s)	111, 369, 651, 692, 744, 798
FalI	AAGNNNNNCTT	3 cut(s)	29, 61, 1075
FatI	CATG	6 cut(s)	107, 365, 647, 688, 740, 794
FauI	CCCGC	1 cut(s)	979
FauNDI	CATATG	1 cut(s)	160
FblI	GTMKAC	2 cut(s)	672, 737
Fnu4HI	GCNGC	5 cut(s)	321, 363, 432, 453, 1071
FokI	GGATG	3 cut(s)	565, 716, 797
FriOI	GRGCYC	1 cut(s)	992
Fsp4HI	GCNGC	5 cut(s)	321, 363, 432, 453, 1071
FspBI	CTAG	2 cut(s)	245, 684
GluI	GCNGC	5 cut(s)	321, 363, 432, 453, 1071
GsuI	CTGGAG	1 cut(s)	527
HaeIII	GGCC	2 cut(s)	596, 990
Hin1II	CATG	6 cut(s)	111, 369, 651, 692, 744, 798
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HinfI	GANTC	4 cut(s)	182, 201, 725, 889
HphI	GGTGA	3 cut(s)	481, 773, 848
Hpy166II	GTNNAC	6 cut(s)	67, 172, 270, 379, 673, 738
Hpy188I	TCNGA	3 cut(s)	138, 206, 873
Hpy188III	TCNNGA	5 cut(s)	287, 618, 893, 938, 1013
Hpy8I	GTNNAC	6 cut(s)	67, 172, 270, 379, 673, 738
HpyAV	CCTTC	4 cut(s)	481, 586, 775, 1081
HpyCH4III	ACNGT	5 cut(s)	11, 82, 531, 700, 932
HpyF10VI	GCNNNNNNNGC	7 cut(s)	113, 362, 415, 452, 685, 882, 1070
HpyF3I	CTNAG	2 cut(s)	357, 1092
Hsp92II	CATG	6 cut(s)	111, 369, 651, 692, 744, 798
Kzo9I	GATC	7 cut(s)	240, 283, 337, 840, 868, 918, 1009
Lsp1109I	GCAGC	5 cut(s)	307, 374, 439, 443, 1082
LweI	GCATC	6 cut(s)	105, 543, 775, 872, 1051, 1073
MaeI	CTAG	2 cut(s)	245, 684
MaeIII	GTNAC	1 cut(s)	517
MalI	GATC	7 cut(s)	242, 285, 339, 842, 870, 920, 1011
MboI	GATC	7 cut(s)	240, 283, 337, 840, 868, 918, 1009
MboII	GAAGA	5 cut(s)	131, 332, 958, 966, 1070
MfeI	CAATTG	2 cut(s)	273, 627
MflI	RGATCY	2 cut(s)	337, 1009
MhlI	GDGCHC	3 cut(s)	174, 878, 992
MluCI	AATT	9 cut(s)	176, 215, 236, 273, 457, 609, 627, 860, 941
MlyI	GAGTC	1 cut(s)	734
MnlI	CCTC	8 cut(s)	532, 582, 651, 704, 713, 752, 848, 942
Mph1103I	ATGCAT	2 cut(s)	558, 1066
MseI	TTAA	2 cut(s)	822, 927
MslI	CAYNNNNRTG	1 cut(s)	400
MspA1I	CMGCKG	2 cut(s)	434, 550
MspR9I	CCNGG	1 cut(s)	1021
MunI	CAATTG	2 cut(s)	273, 627
Mva1269I	GAATGC	1 cut(s)	679
MvaI	CCWGG	1 cut(s)	1021
MwoI	GCNNNNNNNGC	7 cut(s)	113, 362, 415, 452, 685, 882, 1070
NdeI	CATATG	1 cut(s)	160
NdeII	GATC	7 cut(s)	240, 283, 337, 840, 868, 918, 1009
NlaIII	CATG	6 cut(s)	111, 369, 651, 692, 744, 798
NlaIV	GGNNCC	3 cut(s)	694, 990, 991
NsiI	ATGCAT	2 cut(s)	558, 1066
NspI	RCATGY	2 cut(s)	111, 744
PaeI	GCATGC	1 cut(s)	111
PciI	ACATGT	1 cut(s)	740
PctI	GAATGC	1 cut(s)	679
PfeI	GAWTC	3 cut(s)	182, 201, 889
PkrI	GCNGC	5 cut(s)	322, 364, 433, 454, 1072
PleI	GAGTC	1 cut(s)	733
PpsI	GAGTC	1 cut(s)	733
PscI	ACATGT	1 cut(s)	740
Psp6I	CCWGG	1 cut(s)	1019
PspGI	CCWGG	1 cut(s)	1019
PspN4I	GGNNCC	3 cut(s)	694, 990, 991
PspOMI	GGGCCC	1 cut(s)	988
PspPI	GGNCC	2 cut(s)	988, 989
PstI	CTGCAG	1 cut(s)	1072
PsuI	RGATCY	2 cut(s)	337, 1009
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
RseI	CAYNNNNRTG	1 cut(s)	400
SaqAI	TTAA	2 cut(s)	822, 927
SatI	GCNGC	5 cut(s)	321, 363, 432, 453, 1071
Sau3AI	GATC	7 cut(s)	240, 283, 337, 840, 868, 918, 1009
Sau96I	GGNCC	2 cut(s)	988, 989
SchI	GAGTC	1 cut(s)	734
ScrFI	CCNGG	1 cut(s)	1021
SduI	GDGCHC	3 cut(s)	174, 878, 992
SfaNI	GCATC	6 cut(s)	105, 543, 775, 872, 1051, 1073
SfcI	CTRYAG	1 cut(s)	1068
SmiMI	CAYNNNNRTG	1 cut(s)	400
SphI	GCATGC	1 cut(s)	111
Sse9I	AATT	9 cut(s)	176, 215, 236, 273, 457, 609, 627, 860, 941
SsiI	CCGC	3 cut(s)	251, 550, 986
SspMI	CTAG	2 cut(s)	245, 684
StyD4I	CCNGG	1 cut(s)	1019
TaaI	ACNGT	5 cut(s)	11, 82, 531, 700, 932
TaqI	TCGA	3 cut(s)	894, 921, 937
TasI	AATT	9 cut(s)	176, 215, 236, 273, 457, 609, 627, 860, 941
TatI	WGTACW	1 cut(s)	411
TfiI	GAWTC	3 cut(s)	182, 201, 889
Tru1I	TTAA	2 cut(s)	822, 927
Tru9I	TTAA	2 cut(s)	822, 927
TscAI	CASTG	1 cut(s)	703
TseI	GCWGC	5 cut(s)	320, 362, 431, 452, 1070
TspDTI	ATGAA	1 cut(s)	174
TspGWI	ACGGA	1 cut(s)	1059
TspRI	CASTG	1 cut(s)	703
VneI	GTGCAC	1 cut(s)	170
XagI	CCTNNNNNAGG	1 cut(s)	356
XapI	RAATTY	3 cut(s)	176, 215, 609
XceI	RCATGY	2 cut(s)	111, 744
XmiI	GTMKAC	2 cut(s)	672, 737
XspI	CTAG	2 cut(s)	245, 684
Zsp2I	ATGCAT	2 cut(s)	558, 1066

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.