Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001147

Physical Location & Seq

Genomic Coordinates Reverse (-)

36442989 .. 36446873

Gene Structure 3885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g48420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGTGGGTAGCGGAAGAAGAACCACAGTGCTCTGTCCGTGGGAGGTATTATACGAGGCAGGAGATAGAGCTTCGTTCTCCATCTCGGAGGGATGGCATTAGCCGGAAGAAAGAGACAGAATTGCGCGGCTTGTATTGCTCTTATCTTAAAGAGCTCGGCATGAGGATTGAATTGCCTCAGGTGACAATAGCATGTGCAATGATGTTGTGCCACCATTTTTACATGCGTCAATCTCATGCCAAGAATGATTGGAAGACAATTGCAACTGTAAGTATCTTTCTTGCTTGCAAAATACAAGATACCCGGCGCCCTTTGAATGATGTTCTTCGTCAAGCATCTGATATACTCCAGAAATTGGATGCTTCTGCATTACCATCTTTAAGACGGAAAGAAGTCTTCAAGGAATTGGTTTTAGGTGCAGAGATAATTCTGTTGTCCACAGTTGGTTTTGATTTTGAGATGCAGCTTCCTTACATCTCACTTGTTGAAGCTCTAAGGAGGTTAAATCTTCTCCCTGTCCTTGCTGAGAGGGCATGGAATTACGTTAATGATTGCCTTTGTACATCATTGTGCTTGCAGTACGAGGCCCACTACATTGCAGCTGGTTCACTGTTTCTTGCTGCAGAAATACAAAAAGTCAAACTTCCCAAAGAGGATGGAAAAGTTTGGTGGGCGGAGTTTGATGTTTCAGCGAAACAGTTAGATGACGTCATTCAAGAGATGGTACAAAGTTTGCAGAAGGCAAGCAGAAAACAAGCTCTATCTCCCAAAAAGGGGAAGGGAAATCAGTCTGAAACTTTAATTAGAAGGCCAAGTGATCCTAGTAGCTCTCAATCATGTGTTTCAAGTGAAGCAGCGATTGATGGTCATTGTAGGCACAGCACCTTGGCGGAAGAGGACAGAGGACTAGGAGAGTCTATTATGTCTTTCAACCAAAATGCTATAGAAGGTGAGAACTGTACCACCACGAAGGAAGCTTTATCATGTCACACATGTGATAGTGGTAGTCCAAGTGCCAATGTTGAGGATGGTGGTGCTGAGATCAAAGGTGAACAATATGATCCGAACGATAATGCGATTGACATTGACCGGATTAGAGATAAATTGAAGAGGCGGAGATCAGGCGGTAAAGTTTCCAATAAGAAGGTGGATACCCCAGATGTAGAGATAGATGCTGAAGCATGGATAGAAAGTGAGCTTGAAGGTGGTATAGTGCTAGAAGATGCCTCCCCAGAGAAGAAACAAAAGGAGGTATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

420

Amino Acids

47.12

Weight (kDa)

5.62

Isoelectric Point (pI)

69.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	18 - 151	3.5e-12	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630
fragaria_vesca	FvH4_2g39390 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420
malus_domestica	MD04G1049900.v1.1 MD06G1050000.v1.1 MD08G1026200.v1.1
prunus_persica	Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1
pyrus_communis	pycom04g04390 pycom06g04230 pycom06g04240 pycom08g02030
rosa_chinensis	RchiOBHm_Chr2g0168341 RchiOBHm_Chr3g0451061 RchiOBHm_Chr6g0301611
rosa_laevigata	RLG00000011239 RLG00000021768 RLG00000025695
rosa_multiflora	Rmu_co8487951.1_g000001 Rmu_sc0000078.1_g000004 Rmu_sc0016462.1_g000004 Rmu_ssc0000452.1_g000012
rosa_roxburghii	Rroxscaffold_2G00083130 Rroxscaffold_7G00166600
rosa_rugosa	Rorug02G0532800 Rorug02G0532900 Rorug02G0533000 Rorug02G0533000 Rorug02G0630800 Rorug06G0307200 Rorug06G0307300
rosa_samantha	Rh2AG602100 Rh2BG615400 Rh2CG583100 Rh2DG625600 Rh3AG033200 Rh3BG033500 Rh3CG032200 Rh3DG033200 Rh6AG420100 Rh6BG426200 Rh6CG433100 Rh6DG419500
rosa_wichuraiana	Rw0G019830 Rw2G049980 Rw3G002440 Rw6G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	711
AccB1I	GGYRCC	1 cut(s)	306
AccB7I	CCANNNNNTGG	1 cut(s)	355
AccII	CGCG	1 cut(s)	126
AciI	CCGC	6 cut(s)	11, 126, 674, 890, 1114, 1125
AclWI	GGATC	2 cut(s)	812, 1055
AcuI	CTGAAG	1 cut(s)	1197
AcyI	GRCGYC	2 cut(s)	307, 708
AfaI	GTAC	4 cut(s)	562, 581, 726, 961
AfiI	CCNNNNNNNGG	3 cut(s)	355, 773, 774
AflIII	ACRYGT	1 cut(s)	992
AgsI	TTSAA	9 cut(s)	170, 316, 400, 488, 716, 846, 931, 1108, 1202
AleI	CACNNNNGTG	1 cut(s)	993
AluBI	AGCT	9 cut(s)	70, 154, 466, 491, 602, 758, 828, 977, 1198
AluI	AGCT	9 cut(s)	70, 154, 466, 491, 602, 758, 828, 977, 1198
Alw21I	GWGCWC	2 cut(s)	32, 156
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	2 cut(s)	812, 1055
AoxI	GGCC	2 cut(s)	585, 809
ApeKI	GCWGC	4 cut(s)	463, 599, 620, 854
AspLEI	GCGC	2 cut(s)	126, 309
AspS9I	GGNCC	1 cut(s)	586
AsuC2I	CCSGG	1 cut(s)	304
AsuHPI	GGTGA	3 cut(s)	193, 962, 1061
AxyI	CCTNAGG	1 cut(s)	177
BanI	GGYRCC	1 cut(s)	306
BanII	GRGCYC	1 cut(s)	156
BbsI	GAAGAC	2 cut(s)	260, 388
Bbv12I	GWGCWC	2 cut(s)	32, 156
BbvI	GCAGC	4 cut(s)	475, 607, 611, 866
BccI	CCATC	7 cut(s)	86, 88, 382, 650, 715, 857, 1022
BciVI	GTATCC	1 cut(s)	1144
BcnI	CCSGG	1 cut(s)	304
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	3 cut(s)	822, 908, 1217
BfmI	CTRYAG	2 cut(s)	621, 942
BfoI	RGCGCY	1 cut(s)	310
BfuI	GTATCC	1 cut(s)	1144
BisI	GCNGC	5 cut(s)	127, 464, 600, 621, 855
BlsI	GCNGC	5 cut(s)	128, 465, 601, 622, 856
Bme1390I	CCNGG	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	586
BmiI	GGNNCC	1 cut(s)	308
BmrFI	CCNGG	1 cut(s)	304
BmsI	GCATC	5 cut(s)	344, 349, 450, 1162, 1213
BpiI	GAAGAC	2 cut(s)	260, 388
BpmI	CTGGAG	1 cut(s)	332
BpuMI	CCSGG	1 cut(s)	304
BsaHI	GRCGYC	2 cut(s)	307, 708
BsaJI	CCNNGG	2 cut(s)	37, 885
BsaWI	WCCGGW	1 cut(s)	1089
BsaXI	ACNNNNNCTCC	1 cut(s)	1241
Bsc4I	CCNNNNNNNGG	3 cut(s)	355, 773, 774
Bse21I	CCTNAGG	1 cut(s)	177
Bse3DI	GCAATG	2 cut(s)	204, 594
BseDI	CCNNGG	2 cut(s)	37, 885
BseGI	GGATG	4 cut(s)	97, 364, 661, 1033
BseLI	CCNNNNNNNGG	3 cut(s)	355, 773, 774
BseMI	GCAATG	2 cut(s)	204, 594
BseMII	CTCAG	3 cut(s)	191, 516, 1029
BseXI	GCAGC	4 cut(s)	475, 607, 611, 866
BsgI	GTGCAG	1 cut(s)	438
Bsh1236I	CGCG	1 cut(s)	126
BshFI	GGCC	2 cut(s)	587, 811
BshNI	GGYRCC	1 cut(s)	306
BsiHKAI	GWGCWC	2 cut(s)	32, 156
BsiSI	CCGG	3 cut(s)	103, 304, 1090
BslI	CCNNNNNNNGG	3 cut(s)	355, 773, 774
BsmAI	GTCTC	1 cut(s)	107
BsnI	GGCC	2 cut(s)	587, 811
Bsp1286I	GDGCHC	2 cut(s)	32, 156
Bsp1407I	TGTACA	1 cut(s)	560
Bsp143I	GATC	4 cut(s)	817, 1041, 1060, 1118
BspACI	CCGC	6 cut(s)	11, 126, 674, 890, 1114, 1125
BspANI	GGCC	2 cut(s)	587, 811
BspCNI	CTCAG	3 cut(s)	190, 517, 1030
BspFNI	CGCG	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	308
BspMAI	CTGCAG	1 cut(s)	625
BspPI	GGATC	2 cut(s)	812, 1055
BspT107I	GGYRCC	1 cut(s)	306
BsrDI	GCAATG	2 cut(s)	204, 594
BsrGI	TGTACA	1 cut(s)	560
BssECI	CCNNGG	2 cut(s)	37, 885
BssMI	GATC	4 cut(s)	817, 1041, 1060, 1118
BssNI	GRCGYC	2 cut(s)	307, 708
BssT1I	CCWWGG	1 cut(s)	885
Bst4CI	ACNGT	6 cut(s)	27, 268, 442, 612, 699, 959
Bst6I	CTCTTC	2 cut(s)	888, 1103
BstACI	GRCGYC	2 cut(s)	307, 708
BstAUI	TGTACA	1 cut(s)	560
BstC8I	GCNNGC	3 cut(s)	286, 575, 745
BstDEI	CTNAG	4 cut(s)	177, 494, 525, 1038
BstDSI	CCRYGG	1 cut(s)	37
BstF5I	GGATG	4 cut(s)	97, 364, 661, 1033
BstFNI	CGCG	1 cut(s)	126
BstH2I	RGCGCY	1 cut(s)	310
BstHHI	GCGC	2 cut(s)	126, 309
BstKTI	GATC	4 cut(s)	820, 1044, 1063, 1121
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	4 cut(s)	817, 1041, 1060, 1118
BstMWI	GCNNNNNNNGC	2 cut(s)	135, 530
BstNSI	RCATGY	3 cut(s)	195, 226, 996
BstSCI	CCNGG	1 cut(s)	302
BstSFI	CTRYAG	2 cut(s)	621, 942
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	4 cut(s)	475, 607, 611, 866
BstV2I	GAAGAC	2 cut(s)	260, 388
Bsu36I	CCTNAGG	1 cut(s)	177
BsuI	GTATCC	1 cut(s)	1144
BsuRI	GGCC	2 cut(s)	587, 811
BtgI	CCRYGG	1 cut(s)	37
BtsCI	GGATG	4 cut(s)	97, 364, 661, 1033
BtsIMutI	CAGTG	2 cut(s)	32, 608
Cac8I	GCNNGC	3 cut(s)	286, 575, 745
CfoI	GCGC	2 cut(s)	126, 309
Cfr13I	GGNCC	1 cut(s)	586
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	4 cut(s)	561, 580, 725, 960
CviAII	CATG	9 cut(s)	160, 192, 223, 236, 534, 837, 984, 993, 1182
CviQI	GTAC	4 cut(s)	561, 580, 725, 960
DdeI	CTNAG	4 cut(s)	177, 494, 525, 1038
DinI	GGCGCC	1 cut(s)	308
DpnI	GATC	4 cut(s)	819, 1043, 1062, 1120
DpnII	GATC	4 cut(s)	817, 1041, 1060, 1118
Eam1104I	CTCTTC	2 cut(s)	888, 1103
EarI	CTCTTC	2 cut(s)	888, 1103
EciI	GGCGGA	3 cut(s)	689, 905, 1129
Ecl136II	GAGCTC	1 cut(s)	154
Eco130I	CCWWGG	1 cut(s)	885
Eco24I	GRGCYC	1 cut(s)	156
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	1197
Eco81I	CCTNAGG	1 cut(s)	177
EcoICRI	GAGCTC	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	885
EcoT38I	GRGCYC	1 cut(s)	156
EgeI	GGCGCC	1 cut(s)	308
EheI	GGCGCC	1 cut(s)	308
ErhI	CCWWGG	1 cut(s)	885
FaeI	CATG	9 cut(s)	163, 195, 226, 239, 537, 840, 987, 996, 1185
FalI	AAGNNNNNCTT	2 cut(s)	627, 659
FatI	CATG	9 cut(s)	159, 191, 222, 235, 533, 836, 983, 992, 1181
Fnu4HI	GCNGC	5 cut(s)	127, 464, 600, 621, 855
FokI	GGATG	4 cut(s)	104, 371, 668, 1040
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	5 cut(s)	127, 464, 600, 621, 855
FspBI	CTAG	3 cut(s)	822, 908, 1217
GlaI	GCGC	2 cut(s)	125, 308
GluI	GCNGC	5 cut(s)	127, 464, 600, 621, 855
GsuI	CTGGAG	1 cut(s)	332
HaeII	RGCGCY	1 cut(s)	310
HaeIII	GGCC	2 cut(s)	587, 811
HapII	CCGG	3 cut(s)	103, 304, 1090
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	2 cut(s)	126, 309
Hin1I	GRCGYC	2 cut(s)	307, 708
Hin1II	CATG	9 cut(s)	163, 195, 226, 239, 537, 840, 987, 996, 1185
Hin6I	GCGC	2 cut(s)	124, 307
HinP1I	GCGC	2 cut(s)	124, 307
HindIII	AAGCTT	1 cut(s)	975
HinfI	GANTC	1 cut(s)	914
HpaII	CCGG	3 cut(s)	103, 304, 1090
HphI	GGTGA	3 cut(s)	193, 962, 1061
Hpy166II	GTNNAC	3 cut(s)	438, 608, 1052
Hpy188I	TCNGA	4 cut(s)	87, 340, 793, 1065
Hpy188III	TCNNGA	2 cut(s)	349, 716
Hpy8I	GTNNAC	3 cut(s)	438, 608, 1052
HpyAV	CCTTC	7 cut(s)	733, 772, 801, 941, 964, 1138, 1196
HpyCH4III	ACNGT	6 cut(s)	27, 268, 442, 612, 699, 959
HpyCH4IV	ACGT	2 cut(s)	543, 708
HpyF10VI	GCNNNNNNNGC	2 cut(s)	135, 530
HpyF3I	CTNAG	4 cut(s)	177, 494, 525, 1038
HpySE526I	ACGT	2 cut(s)	543, 708
Hsp92I	GRCGYC	2 cut(s)	307, 708
Hsp92II	CATG	9 cut(s)	163, 195, 226, 239, 537, 840, 987, 996, 1185
HspAI	GCGC	2 cut(s)	124, 307
KasI	GGCGCC	1 cut(s)	306
Kzo9I	GATC	4 cut(s)	817, 1041, 1060, 1118
Lsp1109I	GCAGC	4 cut(s)	475, 607, 611, 866
LweI	GCATC	5 cut(s)	344, 349, 450, 1162, 1213
MaeI	CTAG	3 cut(s)	822, 908, 1217
MaeII	ACGT	2 cut(s)	543, 708
MaeIII	GTNAC	2 cut(s)	181, 986
MalI	GATC	4 cut(s)	819, 1043, 1062, 1120
MboI	GATC	4 cut(s)	817, 1041, 1060, 1118
MfeI	CAATTG	1 cut(s)	258
MhlI	GDGCHC	2 cut(s)	32, 156
MluCI	AATT	9 cut(s)	119, 170, 258, 353, 404, 426, 538, 801, 1103
Mly113I	GGCGCC	1 cut(s)	307
MlyI	GAGTC	1 cut(s)	923
MseI	TTAA	5 cut(s)	147, 380, 503, 546, 800
MslI	CAYNNNNRTG	2 cut(s)	568, 993
MspA1I	CMGCKG	1 cut(s)	602
MspI	CCGG	3 cut(s)	103, 304, 1090
MspR9I	CCNGG	1 cut(s)	304
MunI	CAATTG	1 cut(s)	258
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	2 cut(s)	135, 530
NarI	GGCGCC	1 cut(s)	307
NciI	CCSGG	1 cut(s)	304
NdeII	GATC	4 cut(s)	817, 1041, 1060, 1118
NlaIII	CATG	9 cut(s)	163, 195, 226, 239, 537, 840, 987, 996, 1185
NlaIV	GGNNCC	1 cut(s)	308
NmeAIII	GCCGAG	1 cut(s)	135
NmuCI	GTSAC	2 cut(s)	181, 986
NspI	RCATGY	3 cut(s)	195, 226, 996
OliI	CACNNNNGTG	1 cut(s)	993
PciI	ACATGT	1 cut(s)	992
PflMI	CCANNNNNTGG	1 cut(s)	355
PkrI	GCNGC	5 cut(s)	128, 465, 601, 622, 856
PleI	GAGTC	1 cut(s)	922
PluTI	GGCGCC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	922
PscI	ACATGT	1 cut(s)	992
Psp124BI	GAGCTC	1 cut(s)	156
PspN4I	GGNNCC	1 cut(s)	308
PspPI	GGNCC	1 cut(s)	586
PstI	CTGCAG	1 cut(s)	625
PvuII	CAGCTG	1 cut(s)	602
RsaI	GTAC	4 cut(s)	562, 581, 726, 961
RsaNI	GTAC	4 cut(s)	561, 580, 725, 960
RseI	CAYNNNNRTG	2 cut(s)	568, 993
SacI	GAGCTC	1 cut(s)	156
SaqAI	TTAA	5 cut(s)	147, 380, 503, 546, 800
SatI	GCNGC	5 cut(s)	127, 464, 600, 621, 855
Sau3AI	GATC	4 cut(s)	817, 1041, 1060, 1118
Sau96I	GGNCC	1 cut(s)	586
SchI	GAGTC	1 cut(s)	923
ScrFI	CCNGG	1 cut(s)	304
SduI	GDGCHC	2 cut(s)	32, 156
SfaNI	GCATC	5 cut(s)	344, 349, 450, 1162, 1213
SfcI	CTRYAG	2 cut(s)	621, 942
SfoI	GGCGCC	1 cut(s)	308
SmiMI	CAYNNNNRTG	2 cut(s)	568, 993
Sse9I	AATT	9 cut(s)	119, 170, 258, 353, 404, 426, 538, 801, 1103
SsiI	CCGC	6 cut(s)	11, 126, 674, 890, 1114, 1125
SspDI	GGCGCC	1 cut(s)	306
SspMI	CTAG	3 cut(s)	822, 908, 1217
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	302
StyI	CCWWGG	1 cut(s)	885
TaaI	ACNGT	6 cut(s)	27, 268, 442, 612, 699, 959
TaiI	ACGT	2 cut(s)	546, 711
TasI	AATT	9 cut(s)	119, 170, 258, 353, 404, 426, 538, 801, 1103
TatI	WGTACW	1 cut(s)	560
TauI	GCSGC	1 cut(s)	129
Tru1I	TTAA	5 cut(s)	147, 380, 503, 546, 800
Tru9I	TTAA	5 cut(s)	147, 380, 503, 546, 800
TscAI	CASTG	2 cut(s)	32, 615
TseFI	GTSAC	2 cut(s)	181, 986
TseI	GCWGC	4 cut(s)	463, 599, 620, 854
Tsp45I	GTSAC	2 cut(s)	181, 986
TspGWI	ACGGA	2 cut(s)	26, 400
TspRI	CASTG	2 cut(s)	32, 615
Van91I	CCANNNNNTGG	1 cut(s)	355
XceI	RCATGY	3 cut(s)	195, 226, 996
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1144
XspI	CTAG	3 cut(s)	822, 908, 1217
ZraI	GACGTC	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.