Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001147

Physical Location & Seq

Genomic Coordinates Forward (+)

66304051 .. 66305527

Gene Structure 1477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0532900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCTATTCATCAAAAGCTTCTCTCAGTTTTTGTCTTGCTTGTTCTGTTGGCTTTCAACTTGAGCGATGCGCAGAACTTGAAAGTTGGGTTCTACCATAAAACATGCCCAAATCTAGAGGCCATTGTTGCAGCGACTACTAATCAGTACATATCTCGGGCACCAACACTTGCTGCTCCTTTGTTGAGGATGCATTTTCATGATTGCTTCGTTAGGGGATGTGATGGCTCTGTGCTAATTAATTCAACAGCAAGCAATCAAGCAGAGAAAGCAAATACCGCCAACCAAAGCTTGAGAGGGTTCCATGTCATTGACGCTGTAAAATCTGCAGTAGAAAAGAAGTGTCCCGGCATTGTTTCCTGTGCAGATATCTTGGCGTTGGTAGCACGCGACGCAGTAGGATTTCTTCATCATGGAGCATTTTGGCAAGTTCCAACAGGACGTAGAGATGGGAGAGTGTCATTAGCCTCAGAGGCCGCAAGAAACTTACCTCCTCCAATTGCCAACATTACTCAGCTAAAAGCAATGTTTAGCGGAAAGGGTCTAAGTGTTAAAGACCTTGCGGTTCTATCAGGAGGGCACACAATCGGAACATCTCACTGTGGACCCGTCACAAATCGATTGTACAACTTCACTGGCCGCGGTGATACAGACCCGAGTTTGGACAAAAATTACATTGCACAGTTGAAGATCAAATGCAAACCAGGAGATATCACTACCACCATTTTGGAGATGGACCCCGGAAGCTTCAAGAGGTTTGATGAAGATTACTACACTCTAGTCTCTAAAAGAAGAGGGCTTTTCCAATCTGATGCTGCTCTTCTCGATGACACTGAGACGAAAGCGTACGTGTTACGTCAAGCCACCACTCATGGATCTACATTTCTAAAAGATTTTGCTGCCTCAATGGTGAAGATGGGTAAAATTGGAGTCCTCACTGGCTCAGCTGGTGAAATTAGGAAGCAATGTGCTTTTATTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

327

Amino Acids

35.37

Weight (kDa)

9.22

Isoelectric Point (pI)

27.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	45 - 288	4.5e-79	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630
fragaria_vesca	FvH4_2g39390 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420
malus_domestica	MD04G1049900.v1.1 MD06G1050000.v1.1 MD08G1026200.v1.1
prunus_persica	Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1
pyrus_communis	pycom04g04390 pycom06g04230 pycom06g04240 pycom08g02030
rosa_chinensis	RchiOBHm_Chr2g0168341 RchiOBHm_Chr3g0451061 RchiOBHm_Chr6g0301611
rosa_laevigata	RLG00000011239 RLG00000021768 RLG00000025695
rosa_multiflora	Rmu_co8487951.1_g000001 Rmu_sc0000078.1_g000004 Rmu_sc0016462.1_g000004 Rmu_ssc0000452.1_g000012
rosa_roxburghii	Rroxscaffold_2G00083130 Rroxscaffold_7G00166600
rosa_rugosa	Rorug02G0532800 Rorug02G0532900 Rorug02G0533000 Rorug02G0533000 Rorug02G0630800 Rorug06G0307200 Rorug06G0307300
rosa_samantha	Rh2AG602100 Rh2BG615400 Rh2CG583100 Rh2DG625600 Rh3AG033200 Rh3BG033500 Rh3CG032200 Rh3DG033200 Rh6AG420100 Rh6BG426200 Rh6CG433100 Rh6DG419500
rosa_wichuraiana	Rw0G019830 Rw2G049980 Rw3G002440 Rw6G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	72
AccB1I	GGYRCC	1 cut(s)	160
AccII	CGCG	2 cut(s)	390, 642
AciI	CCGC	6 cut(s)	279, 477, 534, 563, 640, 642
AclWI	GGATC	1 cut(s)	883
AcoI	YGGCCR	1 cut(s)	637
AfaI	GTAC	3 cut(s)	149, 626, 848
AfiI	CCNNNNNNNGG	1 cut(s)	661
AflIII	ACRYGT	1 cut(s)	849
AgsI	TTSAA	5 cut(s)	58, 82, 246, 688, 751
AjnI	CCWGG	1 cut(s)	703
AluBI	AGCT	5 cut(s)	19, 291, 517, 747, 947
AluI	AGCT	5 cut(s)	19, 291, 517, 747, 947
Alw26I	GTCTC	2 cut(s)	787, 830
AlwI	GGATC	1 cut(s)	883
Ama87I	CYCGRG	2 cut(s)	156, 655
AoxI	GGCC	3 cut(s)	120, 474, 637
ApeKI	GCWGC	4 cut(s)	131, 173, 815, 899
AseI	ATTAAT	2 cut(s)	240, 978
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	2 cut(s)	605, 736
AsuC2I	CCSGG	2 cut(s)	348, 741
AsuHPI	GGTGA	3 cut(s)	656, 922, 962
AvaI	CYCGRG	2 cut(s)	156, 655
AvaII	GGWCC	2 cut(s)	605, 736
BaeGI	GKGCMC	2 cut(s)	163, 582
BanI	GGYRCC	1 cut(s)	160
BarI	GAAGNNNNNNTAC	2 cut(s)	390, 422
BbvI	GCAGC	4 cut(s)	143, 160, 802, 886
BccI	CCATC	4 cut(s)	218, 443, 727, 910
BciT130I	CCWGG	1 cut(s)	705
BcnI	CCSGG	2 cut(s)	348, 741
BcoDI	GTCTC	2 cut(s)	787, 830
BfaI	CTAG	2 cut(s)	116, 779
BfmI	CTRYAG	1 cut(s)	327
BglI	GCCNNNNNGGC	1 cut(s)	473
BisI	GCNGC	6 cut(s)	132, 174, 477, 640, 816, 900
BlpI	GCTNAGC	1 cut(s)	943
BlsI	GCNGC	6 cut(s)	133, 175, 478, 641, 817, 901
Bme1390I	CCNGG	3 cut(s)	348, 705, 741
Bme18I	GGWCC	2 cut(s)	605, 736
BmeT110I	CYCGRG	2 cut(s)	156, 655
BmgT120I	GGNCC	2 cut(s)	605, 736
BmiI	GGNNCC	4 cut(s)	162, 302, 607, 738
BmrFI	CCNGG	3 cut(s)	348, 705, 741
BmsI	GCATC	3 cut(s)	58, 180, 802
Bpu1102I	GCTNAGC	1 cut(s)	943
BpuEI	CTTGAG	2 cut(s)	82, 313
BpuMI	CCSGG	2 cut(s)	348, 741
Bsa29I	ATCGAT	1 cut(s)	619
BsaAI	YACGTR	1 cut(s)	850
BsaJI	CCNNGG	2 cut(s)	640, 739
Bsc4I	CCNNNNNNNGG	1 cut(s)	661
Bse1I	ACTGG	2 cut(s)	640, 943
Bse3DI	GCAATG	3 cut(s)	531, 675, 971
BseBI	CCWGG	1 cut(s)	705
BseCI	ATCGAT	1 cut(s)	619
BseDI	CCNNGG	2 cut(s)	640, 739
BseGI	GGATG	2 cut(s)	195, 224
BseLI	CCNNNNNNNGG	1 cut(s)	661
BseMI	GCAATG	3 cut(s)	531, 675, 971
BseMII	CTCAG	5 cut(s)	39, 483, 527, 825, 957
BseNI	ACTGG	2 cut(s)	640, 943
BseRI	GAGGAG	1 cut(s)	483
BseSI	GKGCMC	2 cut(s)	163, 582
BseXI	GCAGC	4 cut(s)	143, 160, 802, 886
BsgI	GTGCAG	1 cut(s)	384
Bsh1236I	CGCG	2 cut(s)	390, 642
BshFI	GGCC	3 cut(s)	122, 476, 639
BshNI	GGYRCC	1 cut(s)	160
BshVI	ATCGAT	1 cut(s)	619
BsiHKCI	CYCGRG	2 cut(s)	156, 655
BsiSI	CCGG	2 cut(s)	348, 741
BsiWI	CGTACG	1 cut(s)	846
BslFI	GGGAC	1 cut(s)	330
BslI	CCNNNNNNNGG	1 cut(s)	661
BsmAI	GTCTC	2 cut(s)	787, 830
BsmBI	CGTCTC	1 cut(s)	830
BsmFI	GGGAC	1 cut(s)	330
BsnI	GGCC	3 cut(s)	122, 476, 639
BsoBI	CYCGRG	2 cut(s)	156, 655
Bsp1286I	GDGCHC	2 cut(s)	163, 582
Bsp1407I	TGTACA	1 cut(s)	624
Bsp143I	GATC	2 cut(s)	690, 875
Bsp1720I	GCTNAGC	1 cut(s)	943
BspACI	CCGC	6 cut(s)	279, 477, 534, 563, 640, 642
BspANI	GGCC	3 cut(s)	122, 476, 639
BspCNI	CTCAG	5 cut(s)	38, 482, 526, 826, 956
BspDI	ATCGAT	1 cut(s)	619
BspFNI	CGCG	2 cut(s)	390, 642
BspHI	TCATGA	1 cut(s)	199
BspLI	GGNNCC	4 cut(s)	162, 302, 607, 738
BspMAI	CTGCAG	1 cut(s)	331
BspPI	GGATC	1 cut(s)	883
BspQI	GCTCTTC	1 cut(s)	825
BspT107I	GGYRCC	1 cut(s)	160
BsrDI	GCAATG	3 cut(s)	531, 675, 971
BsrGI	TGTACA	1 cut(s)	624
BsrI	ACTGG	2 cut(s)	640, 943
BssECI	CCNNGG	2 cut(s)	640, 739
BssMI	GATC	2 cut(s)	690, 875
Bst2UI	CCWGG	1 cut(s)	705
Bst4CI	ACNGT	2 cut(s)	602, 684
Bst6I	CTCTTC	2 cut(s)	787, 825
BstAUI	TGTACA	1 cut(s)	624
BstBAI	YACGTR	1 cut(s)	850
BstC8I	GCNNGC	2 cut(s)	253, 388
BstDEI	CTNAG	6 cut(s)	25, 469, 513, 545, 834, 943
BstDSI	CCRYGG	1 cut(s)	640
BstF5I	GGATG	2 cut(s)	195, 224
BstFNI	CGCG	2 cut(s)	390, 642
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	2 cut(s)	693, 878
BstMAI	GTCTC	2 cut(s)	787, 830
BstMBI	GATC	2 cut(s)	690, 875
BstMWI	GCNNNNNNNGC	6 cut(s)	128, 269, 278, 383, 392, 473
BstNI	CCWGG	1 cut(s)	705
BstNSI	RCATGY	1 cut(s)	108
BstSCI	CCNGG	3 cut(s)	346, 703, 739
BstSFI	CTRYAG	1 cut(s)	327
BstSLI	GKGCMC	2 cut(s)	163, 582
BstUI	CGCG	2 cut(s)	390, 642
BstV1I	GCAGC	4 cut(s)	143, 160, 802, 886
BstX2I	RGATCY	1 cut(s)	875
BstXI	CCANNNNNNTGG	1 cut(s)	727
BstYI	RGATCY	1 cut(s)	875
Bsu15I	ATCGAT	1 cut(s)	619
BsuRI	GGCC	3 cut(s)	122, 476, 639
BsuTUI	ATCGAT	1 cut(s)	619
BtgI	CCRYGG	1 cut(s)	640
BtgZI	GCGATG	1 cut(s)	81
BtsCI	GGATG	2 cut(s)	195, 224
BtsIMutI	CAGTG	4 cut(s)	598, 633, 831, 936
Cac8I	GCNNGC	2 cut(s)	253, 388
CciI	TCATGA	1 cut(s)	199
CfoI	GCGC	1 cut(s)	73
Cfr13I	GGNCC	2 cut(s)	605, 736
Cfr42I	CCGCGG	1 cut(s)	643
ClaI	ATCGAT	1 cut(s)	619
CseI	GACGC	2 cut(s)	323, 401
Csp6I	GTAC	3 cut(s)	148, 625, 847
CviAII	CATG	5 cut(s)	105, 200, 305, 413, 872
CviQI	GTAC	3 cut(s)	148, 625, 847
DdeI	CTNAG	6 cut(s)	25, 469, 513, 545, 834, 943
DpnI	GATC	2 cut(s)	692, 877
DpnII	GATC	2 cut(s)	690, 875
EaeI	YGGCCR	1 cut(s)	637
Eam1104I	CTCTTC	2 cut(s)	787, 825
EarI	CTCTTC	2 cut(s)	787, 825
Eco32I	GATATC	2 cut(s)	370, 712
Eco47I	GGWCC	2 cut(s)	605, 736
Eco88I	CYCGRG	2 cut(s)	156, 655
EcoRII	CCWGG	1 cut(s)	703
EcoRV	GATATC	2 cut(s)	370, 712
EcoT22I	ATGCAT	1 cut(s)	195
Esp3I	CGTCTC	1 cut(s)	830
FaeI	CATG	5 cut(s)	108, 203, 308, 416, 875
FaiI	YATR	7 cut(s)	99, 106, 152, 201, 306, 414, 873
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	5 cut(s)	104, 199, 304, 412, 871
Fnu4HI	GCNGC	6 cut(s)	132, 174, 477, 640, 816, 900
FokI	GGATG	2 cut(s)	202, 231
Fsp4HI	GCNGC	6 cut(s)	132, 174, 477, 640, 816, 900
FspBI	CTAG	2 cut(s)	116, 779
FspI	TGCGCA	1 cut(s)	72
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	6 cut(s)	132, 174, 477, 640, 816, 900
HaeIII	GGCC	3 cut(s)	122, 476, 639
HapII	CCGG	2 cut(s)	348, 741
HgaI	GACGC	2 cut(s)	323, 401
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	5 cut(s)	108, 203, 308, 416, 875
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HindIII	AAGCTT	3 cut(s)	17, 289, 745
HinfI	GANTC	1 cut(s)	930
HpaII	CCGG	2 cut(s)	348, 741
HphI	GGTGA	3 cut(s)	656, 922, 962
Hpy166II	GTNNAC	1 cut(s)	605
Hpy188I	TCNGA	3 cut(s)	472, 590, 811
Hpy188III	TCNNGA	5 cut(s)	116, 200, 573, 751, 824
Hpy8I	GTNNAC	1 cut(s)	605
Hpy99I	CGWCG	1 cut(s)	395
HpyCH4III	ACNGT	2 cut(s)	602, 684
HpyCH4IV	ACGT	3 cut(s)	442, 849, 856
HpyCH4V	TGCA	6 cut(s)	131, 193, 329, 365, 680, 699
HpyF10VI	GCNNNNNNNGC	6 cut(s)	128, 269, 278, 383, 392, 473
HpyF3I	CTNAG	6 cut(s)	25, 469, 513, 545, 834, 943
HpySE526I	ACGT	3 cut(s)	442, 849, 856
Hsp92II	CATG	5 cut(s)	108, 203, 308, 416, 875
HspAI	GCGC	1 cut(s)	71
KspI	CCGCGG	1 cut(s)	643
Kzo9I	GATC	2 cut(s)	690, 875
LguI	GCTCTTC	1 cut(s)	825
LmnI	GCTCC	2 cut(s)	181, 416
Lsp1109I	GCAGC	4 cut(s)	143, 160, 802, 886
LweI	GCATC	3 cut(s)	58, 180, 802
MaeI	CTAG	2 cut(s)	116, 779
MaeII	ACGT	3 cut(s)	442, 849, 856
MaeIII	GTNAC	2 cut(s)	610, 852
MalI	GATC	2 cut(s)	692, 877
MboI	GATC	2 cut(s)	690, 875
MboII	GAAGA	6 cut(s)	398, 700, 776, 804, 812, 925
MfeI	CAATTG	1 cut(s)	498
MflI	RGATCY	1 cut(s)	875
MhlI	GDGCHC	2 cut(s)	163, 582
MluCI	AATT	7 cut(s)	237, 241, 498, 670, 924, 954, 979
MlyI	GAGTC	1 cut(s)	939
MmeI	TCCRAC	1 cut(s)	458
Mph1103I	ATGCAT	1 cut(s)	195
MseI	TTAA	3 cut(s)	240, 552, 978
MslI	CAYNNNNRTG	1 cut(s)	198
MspA1I	CMGCKG	2 cut(s)	642, 947
MspI	CCGG	2 cut(s)	348, 741
MspR9I	CCNGG	3 cut(s)	348, 705, 741
MunI	CAATTG	1 cut(s)	498
MvaI	CCWGG	1 cut(s)	705
MvnI	CGCG	2 cut(s)	390, 642
MwoI	GCNNNNNNNGC	6 cut(s)	128, 269, 278, 383, 392, 473
NciI	CCSGG	2 cut(s)	348, 741
NdeII	GATC	2 cut(s)	690, 875
NlaIII	CATG	5 cut(s)	108, 203, 308, 416, 875
NlaIV	GGNNCC	4 cut(s)	162, 302, 607, 738
NmuCI	GTSAC	1 cut(s)	610
NsbI	TGCGCA	1 cut(s)	72
NsiI	ATGCAT	1 cut(s)	195
NspI	RCATGY	1 cut(s)	108
PagI	TCATGA	1 cut(s)	199
PciSI	GCTCTTC	1 cut(s)	825
Pfl23II	CGTACG	1 cut(s)	846
PkrI	GCNGC	6 cut(s)	133, 175, 478, 641, 817, 901
PleI	GAGTC	1 cut(s)	938
PpsI	GAGTC	1 cut(s)	938
Ppu21I	YACGTR	1 cut(s)	850
PshBI	ATTAAT	2 cut(s)	240, 978
Psp6I	CCWGG	1 cut(s)	703
PspGI	CCWGG	1 cut(s)	703
PspLI	CGTACG	1 cut(s)	846
PspN4I	GGNNCC	4 cut(s)	162, 302, 607, 738
PspPI	GGNCC	2 cut(s)	605, 736
PstI	CTGCAG	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	875
PvuII	CAGCTG	1 cut(s)	947
RsaI	GTAC	3 cut(s)	149, 626, 848
RsaNI	GTAC	3 cut(s)	148, 625, 847
RseI	CAYNNNNRTG	1 cut(s)	198
SacII	CCGCGG	1 cut(s)	643
SapI	GCTCTTC	1 cut(s)	825
SaqAI	TTAA	3 cut(s)	240, 552, 978
SatI	GCNGC	6 cut(s)	132, 174, 477, 640, 816, 900
Sau3AI	GATC	2 cut(s)	690, 875
Sau96I	GGNCC	2 cut(s)	605, 736
SchI	GAGTC	1 cut(s)	939
ScrFI	CCNGG	3 cut(s)	348, 705, 741
SduI	GDGCHC	2 cut(s)	163, 582
SfaNI	GCATC	3 cut(s)	58, 180, 802
SfcI	CTRYAG	1 cut(s)	327
Sfr303I	CCGCGG	1 cut(s)	643
SgrBI	CCGCGG	1 cut(s)	643
SinI	GGWCC	2 cut(s)	605, 736
SmiMI	CAYNNNNRTG	1 cut(s)	198
SmlI	CTYRAG	2 cut(s)	61, 292
SmoI	CTYRAG	2 cut(s)	61, 292
Sse9I	AATT	7 cut(s)	237, 241, 498, 670, 924, 954, 979
SsiI	CCGC	6 cut(s)	279, 477, 534, 563, 640, 642
SspMI	CTAG	2 cut(s)	116, 779
StyD4I	CCNGG	3 cut(s)	346, 703, 739
TaaI	ACNGT	2 cut(s)	602, 684
TaiI	ACGT	3 cut(s)	445, 852, 859
TaqI	TCGA	2 cut(s)	619, 825
TasI	AATT	7 cut(s)	237, 241, 498, 670, 924, 954, 979
TatI	WGTACW	2 cut(s)	147, 624
TauI	GCSGC	2 cut(s)	479, 642
Tru1I	TTAA	3 cut(s)	240, 552, 978
Tru9I	TTAA	3 cut(s)	240, 552, 978
TscAI	CASTG	4 cut(s)	605, 640, 838, 943
TseFI	GTSAC	1 cut(s)	610
TseI	GCWGC	4 cut(s)	131, 173, 815, 899
Tsp45I	GTSAC	1 cut(s)	610
TspDTI	ATGAA	3 cut(s)	188, 398, 777
TspRI	CASTG	4 cut(s)	605, 640, 838, 943
VpaK11BI	GGWCC	2 cut(s)	605, 736
VspI	ATTAAT	2 cut(s)	240, 978
XbaI	TCTAGA	1 cut(s)	115
XceI	RCATGY	1 cut(s)	108
XcmI	CCANNNNNNNNNTGG	1 cut(s)	730
XspI	CTAG	2 cut(s)	116, 779
Zsp2I	ATGCAT	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.