pycom06g04240

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
5329710 .. 5330350
641 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g04240.2

Sequence Viewer

Length: 561 bp
ATGAATGAAAAAGTTTGGTGGCATAAGTTTGAAGTTTCACCAGAGCAGTTACATGAGGTCGTTCAGCGGATGCGTGGTATGTTGACGAGGAAGGCAGACGGAAAACCAGCTCTATGTCATCCACCACTACCAAAGTCCAACAATGGGAATAACAAGGTCATTTGGTACCAACGGTATGAAACTTCGTCTAGAAACCCAAGTGCAAGTTGTAGTAGCTCTCAGTCATGCGTTTCAATTGAAGAAACAATTGATTATTTGCAACCTACAAAGAAACAAAGGACGTCGTTGCCGTTGGAGGGGCACTATGATTGGGAATCTGATTCCAATAATTCCGTAATTTTGCTAATAGATATATCGAGATACAGACACGAAACATTAATTTGTTATGTTTCACTTGATTTCCAGATCATTAATTTGTTATGTTTCTTCTCTTTTGGCACAAATTTGTTTCACTCTTGGAAAGTTAAGCTGCTTCATTGGTTGGTGTTTAAGTTAATCTCCTTCATTGGGCTGTACGCCAATTGGAAGGAAAGGAGCAACTGCATAGTTCATTCCAACTAG

Protein Analysis

187

Amino Acids

21.81

Weight (kDa)

8.72

Isoelectric Point (pI)

45.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 284
Acc65I GGTACC 1 cut(s) 165
AccB1I GGYRCC 1 cut(s) 165
AciI CCGC 1 cut(s) 67
AcsI RAATTY 1 cut(s) 442
AcyI GRCGYC 1 cut(s) 281
AfaI GTAC 2 cut(s) 167, 515
AfiI CCNNNNNNNGG 3 cut(s) 144, 296, 507
AgsI TTSAA 3 cut(s) 32, 234, 239
AluBI AGCT 3 cut(s) 110, 216, 469
AluI AGCT 3 cut(s) 110, 216, 469
ApeKI GCWGC 1 cut(s) 469
ApoI RAATTY 1 cut(s) 442
AseI ATTAAT 2 cut(s) 377, 411
Asp718I GGTACC 1 cut(s) 165
AsuHPI GGTGA 1 cut(s) 30
BaeGI GKGCMC 1 cut(s) 303
BanI GGYRCC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 456
BceAI ACGGC 1 cut(s) 274
BfaI CTAG 2 cut(s) 189, 559
BisI GCNGC 1 cut(s) 470
BlsI GCNGC 1 cut(s) 471
BmiI GGNNCC 1 cut(s) 167
BmsI GCATC 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 281
Bsc4I CCNNNNNNNGG 3 cut(s) 144, 296, 507
BseGI GGATG 2 cut(s) 75, 118
BseLI CCNNNNNNNGG 3 cut(s) 144, 296, 507
BseMII CTCAG 1 cut(s) 233
BseSI GKGCMC 1 cut(s) 303
BseXI GCAGC 1 cut(s) 456
BshNI GGYRCC 1 cut(s) 165
BslI CCNNNNNNNGG 3 cut(s) 144, 296, 507
Bsp1286I GDGCHC 1 cut(s) 303
Bsp143I GATC 1 cut(s) 405
BspACI CCGC 1 cut(s) 67
BspCNI CTCAG 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 167
BspT107I GGYRCC 1 cut(s) 165
BssMI GATC 1 cut(s) 405
BssNI GRCGYC 1 cut(s) 281
Bst4CI ACNGT 1 cut(s) 174
BstACI GRCGYC 1 cut(s) 281
BstDEI CTNAG 1 cut(s) 219
BstF5I GGATG 2 cut(s) 75, 118
BstKTI GATC 1 cut(s) 408
BstMBI GATC 1 cut(s) 405
BstSLI GKGCMC 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 456
BtsCI GGATG 2 cut(s) 75, 118
Csp6I GTAC 2 cut(s) 166, 514
CviAII CATG 2 cut(s) 53, 225
CviJI RGCY 4 cut(s) 110, 216, 469, 511
CviKI_1 RGCY 4 cut(s) 110, 216, 469, 511
CviQI GTAC 2 cut(s) 166, 514
DdeI CTNAG 1 cut(s) 219
DpnI GATC 1 cut(s) 407
DpnII GATC 1 cut(s) 405
FaeI CATG 2 cut(s) 56, 228
FatI CATG 2 cut(s) 52, 224
Fnu4HI GCNGC 1 cut(s) 470
FokI GGATG 2 cut(s) 82, 105
Fsp4HI GCNGC 1 cut(s) 470
FspBI CTAG 2 cut(s) 189, 559
GluI GCNGC 1 cut(s) 470
Hin1I GRCGYC 1 cut(s) 281
Hin1II CATG 2 cut(s) 56, 228
HincII GTYRAC 1 cut(s) 84
HindII GTYRAC 1 cut(s) 84
HinfI GANTC 2 cut(s) 314, 320
HphI GGTGA 1 cut(s) 30
Hpy166II GTNNAC 1 cut(s) 84
Hpy188I TCNGA 1 cut(s) 319
Hpy188III TCNNGA 3 cut(s) 189, 357, 403
Hpy8I GTNNAC 1 cut(s) 84
Hpy99I CGWCG 1 cut(s) 286
HpyAV CCTTC 3 cut(s) 85, 511, 520
HpyCH4III ACNGT 1 cut(s) 174
HpyCH4IV ACGT 1 cut(s) 281
HpyCH4V TGCA 3 cut(s) 203, 259, 543
HpyF3I CTNAG 1 cut(s) 219
HpySE526I ACGT 1 cut(s) 281
Hsp92I GRCGYC 1 cut(s) 281
Hsp92II CATG 2 cut(s) 56, 228
KpnI GGTACC 1 cut(s) 169
Kzo9I GATC 1 cut(s) 405
LmnI GCTCC 1 cut(s) 534
LpnPI CCDG 3 cut(s) 54, 120, 416
Lsp1109I GCAGC 1 cut(s) 456
LweI GCATC 1 cut(s) 60
MaeI CTAG 2 cut(s) 189, 559
MaeII ACGT 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 48
MalI GATC 1 cut(s) 407
MboI GATC 1 cut(s) 405
MboII GAAGA 2 cut(s) 251, 418
MfeI CAATTG 3 cut(s) 234, 246, 520
MhlI GDGCHC 1 cut(s) 303
MluCI AATT 8 cut(s) 234, 246, 328, 336, 378, 412, 442, 520
MmeI TCCRAC 2 cut(s) 162, 273
MnlI CCTC 3 cut(s) 49, 81, 289
MseI TTAA 5 cut(s) 377, 411, 465, 489, 494
MspA1I CMGCKG 1 cut(s) 67
MunI CAATTG 3 cut(s) 234, 246, 520
NdeII GATC 1 cut(s) 405
NlaIII CATG 2 cut(s) 56, 228
NlaIV GGNNCC 1 cut(s) 167
PcsI WCGNNNNNNNCGW 1 cut(s) 287
PfeI GAWTC 2 cut(s) 314, 320
PkrI GCNGC 1 cut(s) 471
PshBI ATTAAT 2 cut(s) 377, 411
PspN4I GGNNCC 1 cut(s) 167
RsaI GTAC 2 cut(s) 167, 515
RsaNI GTAC 2 cut(s) 166, 514
SaqAI TTAA 5 cut(s) 377, 411, 465, 489, 494
SatI GCNGC 1 cut(s) 470
Sau3AI GATC 1 cut(s) 405
SduI GDGCHC 1 cut(s) 303
SetI ASST 7 cut(s) 60, 112, 159, 218, 265, 284, 471
SfaNI GCATC 1 cut(s) 60
Sse9I AATT 8 cut(s) 234, 246, 328, 336, 378, 412, 442, 520
SsiI CCGC 1 cut(s) 67
SspMI CTAG 2 cut(s) 189, 559
TaaI ACNGT 1 cut(s) 174
TaiI ACGT 1 cut(s) 284
TaqI TCGA 1 cut(s) 356
TasI AATT 8 cut(s) 234, 246, 328, 336, 378, 412, 442, 520
TfiI GAWTC 2 cut(s) 314, 320
Tru1I TTAA 5 cut(s) 377, 411, 465, 489, 494
Tru9I TTAA 5 cut(s) 377, 411, 465, 489, 494
TseI GCWGC 1 cut(s) 469
TspDTI ATGAA 6 cut(s) 17, 21, 192, 464, 493, 539
TspGWI ACGGA 2 cut(s) 114, 322
VspI ATTAAT 2 cut(s) 377, 411
XapI RAATTY 1 cut(s) 442
XbaI TCTAGA 1 cut(s) 188
XspI CTAG 2 cut(s) 189, 559
ZraI GACGTC 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.