Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8487951.1

Orthogroup ID

OG0001147

Physical Location & Seq

Genomic Coordinates Reverse (-)

306 .. 2030

Gene Structure 1725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8487951.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

atgttgtgccaccagttttatatgcgtcaatctcacgctaagaatggttggcagacggtggcaactgcgagcatctttctcgcatgcaaagcagaagatacaccacgctatctgaatgatgttgttgtggtggcatatgagatggtgcacaaatttgattcatctgccttgcaccgaatcagacaaaaagaatttctcaataagcaaaaggaattgatcctagttgcggagagacttctgctgtcaacaattggctttgatctagacattcagcttccatacaagatacttgttgctgctctaaagagattggatcttctccctgaccttgctaaggcggcatggagttttgtgaacgattggcttcgcacatcattgtgcttgcagtacaagccccattacattgcagctggttcggttgctcttgctgctaattttcaaaaggtgaaactacctaaagagaagggaaaagtttggtggctggagtttgatgttacgccgaaacagttggatgaggtcattcagcggatgcatagtatgttcaagcctctaccagctaaaactgggaaggccgttcaacctgaaattttatccggaaagccaattgatagtagccctcaatcatgtatttcaagtgaagcaatggtagaccagcattctaggcatggtgccactgtggatgatagaggattaggaggagagtctgttatgtctacatgtaggcaaaatcttggaggtgagaacaatcttactgggaaggatgccttaccatgccagacgaataataggagtattgtcaaggatagtggtggtgagattaagccaataagaggggaattggacgatcagagcacaagatgcaagattcttgatgttcctaaaagctgtggtaagatcgatattaaccgtattcgagaattgaagaggagaagatgtgataaaggtgtaaataagaagttggcgggctccattactgatgagttagatcctgaagcctggatagaaagtgagcttgaaaacggagtagagctggaagatgcatctgcagcaaagaaacaaaggaaggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

356

Amino Acids

39.89

Weight (kDa)

8.82

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630
fragaria_vesca	FvH4_2g39390 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420
malus_domestica	MD04G1049900.v1.1 MD06G1050000.v1.1 MD08G1026200.v1.1
prunus_persica	Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1
pyrus_communis	pycom04g04390 pycom06g04230 pycom06g04240 pycom08g02030
rosa_chinensis	RchiOBHm_Chr2g0168341 RchiOBHm_Chr3g0451061 RchiOBHm_Chr6g0301611
rosa_laevigata	RLG00000011239 RLG00000021768 RLG00000025695
rosa_multiflora	Rmu_co8487951.1_g000001 Rmu_sc0000078.1_g000004 Rmu_sc0016462.1_g000004 Rmu_ssc0000452.1_g000012
rosa_roxburghii	Rroxscaffold_2G00083130 Rroxscaffold_7G00166600
rosa_rugosa	Rorug02G0532800 Rorug02G0532900 Rorug02G0533000 Rorug02G0533000 Rorug02G0630800 Rorug06G0307200 Rorug06G0307300
rosa_samantha	Rh2AG602100 Rh2BG615400 Rh2CG583100 Rh2DG625600 Rh3AG033200 Rh3BG033500 Rh3CG032200 Rh3DG033200 Rh6AG420100 Rh6BG426200 Rh6CG433100 Rh6DG419500
rosa_wichuraiana	Rw0G019830 Rw2G049980 Rw3G002440 Rw6G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	668
AccI	GTMKAC	2 cut(s)	648, 713
AccIII	TCCGGA	1 cut(s)	593
AciI	CCGC	4 cut(s)	227, 338, 526, 962
AclWI	GGATC	3 cut(s)	211, 321, 980
AcsI	RAATTY	3 cut(s)	152, 191, 585
AcuI	CTGAAG	1 cut(s)	1011
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	3 cut(s)	226, 334, 830
AflIII	ACRYGT	1 cut(s)	716
AgsI	TTSAA	6 cut(s)	440, 544, 578, 633, 922, 1016
AjnI	CCWGG	1 cut(s)	995
AluBI	AGCT	6 cut(s)	274, 410, 557, 885, 1012, 1030
AluI	AGCT	6 cut(s)	274, 410, 557, 885, 1012, 1030
Alw21I	GWGCWC	2 cut(s)	150, 854
Alw26I	GTCTC	1 cut(s)	226
Alw44I	GTGCAC	1 cut(s)	146
AlwI	GGATC	3 cut(s)	211, 321, 980
Aor13HI	TCCGGA	1 cut(s)	593
AoxI	GGCC	1 cut(s)	570
ApaLI	GTGCAC	1 cut(s)	146
ApeKI	GCWGC	4 cut(s)	296, 407, 428, 1046
ApoI	RAATTY	3 cut(s)	152, 191, 585
AsuHPI	GGTGA	3 cut(s)	457, 749, 824
BaeGI	GKGCMC	1 cut(s)	150
BanI	GGYRCC	1 cut(s)	668
BanII	GRGCYC	1 cut(s)	968
Bbv12I	GWGCWC	2 cut(s)	150, 854
BbvI	GCAGC	4 cut(s)	283, 415, 419, 1058
BccI	CCATC	1 cut(s)	136
BceAI	ACGGC	1 cut(s)	557
BcgI	CGANNNNNNTGC	4 cut(s)	61, 95, 396, 430
BciT130I	CCWGG	1 cut(s)	997
BcoDI	GTCTC	1 cut(s)	226
BfaI	CTAG	3 cut(s)	221, 263, 660
BfmI	CTRYAG	1 cut(s)	1044
BisI	GCNGC	5 cut(s)	297, 339, 408, 429, 1047
BlsI	GCNGC	5 cut(s)	298, 340, 409, 430, 1048
Bme1390I	CCNGG	1 cut(s)	997
BmiI	GGNNCC	2 cut(s)	670, 967
BmrFI	CCNGG	1 cut(s)	997
BmrI	ACTGGG	2 cut(s)	573, 762
BmsI	GCATC	6 cut(s)	81, 519, 751, 848, 1027, 1049
BmuI	ACTGGG	2 cut(s)	573, 762
BpmI	CTGGAG	1 cut(s)	503
Bpu10I	CCTNAGC	1 cut(s)	333
Bsa29I	ATCGAT	1 cut(s)	897
BsaWI	WCCGGW	1 cut(s)	593
BsaXI	ACNNNNNCTCC	4 cut(s)	690, 720, 919, 949
Bsc4I	CCNNNNNNNGG	3 cut(s)	226, 334, 830
Bse1I	ACTGG	3 cut(s)	13, 568, 757
Bse3DI	GCAATG	2 cut(s)	402, 648
BseAI	TCCGGA	1 cut(s)	593
BseBI	CCWGG	1 cut(s)	997
BseCI	ATCGAT	1 cut(s)	897
BseGI	GGATG	4 cut(s)	517, 534, 685, 766
BseLI	CCNNNNNNNGG	3 cut(s)	226, 334, 830
BseMI	GCAATG	2 cut(s)	402, 648
BseNI	ACTGG	3 cut(s)	13, 568, 757
BseRI	GAGGAG	2 cut(s)	711, 940
BseSI	GKGCMC	1 cut(s)	150
BseXI	GCAGC	4 cut(s)	283, 415, 419, 1058
BshFI	GGCC	1 cut(s)	572
BshNI	GGYRCC	1 cut(s)	668
BshVI	ATCGAT	1 cut(s)	897
BsiHKAI	GWGCWC	2 cut(s)	150, 854
BsiSI	CCGG	1 cut(s)	594
BslI	CCNNNNNNNGG	3 cut(s)	226, 334, 830
BsmAI	GTCTC	1 cut(s)	226
BsmI	GAATGC	1 cut(s)	655
BsnI	GGCC	1 cut(s)	572
Bsp1286I	GDGCHC	3 cut(s)	150, 854, 968
Bsp13I	TCCGGA	1 cut(s)	593
Bsp143I	GATC	6 cut(s)	216, 259, 313, 844, 894, 985
BspACI	CCGC	4 cut(s)	227, 338, 526, 962
BspANI	GGCC	1 cut(s)	572
BspDI	ATCGAT	1 cut(s)	897
BspEI	TCCGGA	1 cut(s)	593
BspLI	GGNNCC	2 cut(s)	670, 967
BspMAI	CTGCAG	1 cut(s)	1048
BspPI	GGATC	3 cut(s)	211, 321, 980
BspT107I	GGYRCC	1 cut(s)	668
BsrDI	GCAATG	2 cut(s)	402, 648
BsrI	ACTGG	3 cut(s)	13, 568, 757
BssMI	GATC	6 cut(s)	216, 259, 313, 844, 894, 985
Bst2UI	CCWGG	1 cut(s)	997
Bst4CI	ACNGT	4 cut(s)	58, 507, 676, 908
Bst6I	CTCTTC	1 cut(s)	917
BstAPI	GCANNNNNTGC	1 cut(s)	858
BstC8I	GCNNGC	4 cut(s)	70, 85, 383, 964
BstDEI	CTNAG	3 cut(s)	39, 333, 1068
BstENI	CCTNNNNNAGG	1 cut(s)	332
BstF5I	GGATG	4 cut(s)	517, 534, 685, 766
BstKTI	GATC	6 cut(s)	219, 262, 316, 847, 897, 988
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	6 cut(s)	216, 259, 313, 844, 894, 985
BstMWI	GCNNNNNNNGC	7 cut(s)	89, 338, 391, 428, 661, 858, 1046
BstNI	CCWGG	1 cut(s)	997
BstNSI	RCATGY	2 cut(s)	87, 720
BstSCI	CCNGG	1 cut(s)	995
BstSFI	CTRYAG	1 cut(s)	1044
BstSLI	GKGCMC	1 cut(s)	150
BstV1I	GCAGC	4 cut(s)	283, 415, 419, 1058
BstX2I	RGATCY	2 cut(s)	313, 985
BstYI	RGATCY	2 cut(s)	313, 985
Bsu15I	ATCGAT	1 cut(s)	897
BsuRI	GGCC	1 cut(s)	572
BsuTUI	ATCGAT	1 cut(s)	897
BtsCI	GGATG	4 cut(s)	517, 534, 685, 766
BtsIMutI	CAGTG	1 cut(s)	672
Cac8I	GCNNGC	4 cut(s)	70, 85, 383, 964
ClaI	ATCGAT	1 cut(s)	897
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	388
CspCI	CAANNNNNGTGG	2 cut(s)	787, 822
CviAII	CATG	6 cut(s)	84, 342, 624, 665, 717, 771
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	3 cut(s)	39, 333, 1068
DpnI	GATC	6 cut(s)	218, 261, 315, 846, 896, 987
DpnII	GATC	6 cut(s)	216, 259, 313, 844, 894, 985
Eam1104I	CTCTTC	1 cut(s)	917
EarI	CTCTTC	1 cut(s)	917
Eco24I	GRGCYC	1 cut(s)	968
Eco57I	CTGAAG	1 cut(s)	1011
EcoNI	CCTNNNNNAGG	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	995
EcoT22I	ATGCAT	2 cut(s)	534, 1042
EcoT38I	GRGCYC	1 cut(s)	968
FaeI	CATG	6 cut(s)	87, 345, 627, 668, 720, 774
FalI	AAGNNNNNCTT	3 cut(s)	749, 781, 1051
FatI	CATG	6 cut(s)	83, 341, 623, 664, 716, 770
FauI	CCCGC	1 cut(s)	955
FauNDI	CATATG	1 cut(s)	136
FblI	GTMKAC	2 cut(s)	648, 713
Fnu4HI	GCNGC	5 cut(s)	297, 339, 408, 429, 1047
FokI	GGATG	4 cut(s)	524, 541, 692, 773
FriOI	GRGCYC	1 cut(s)	968
Fsp4HI	GCNGC	5 cut(s)	297, 339, 408, 429, 1047
FspBI	CTAG	3 cut(s)	221, 263, 660
GluI	GCNGC	5 cut(s)	297, 339, 408, 429, 1047
GsuI	CTGGAG	1 cut(s)	503
HaeIII	GGCC	1 cut(s)	572
HapII	CCGG	1 cut(s)	594
HgaI	GACGC	1 cut(s)	14
Hin1II	CATG	6 cut(s)	87, 345, 627, 668, 720, 774
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HinfI	GANTC	4 cut(s)	158, 177, 701, 865
HpaII	CCGG	1 cut(s)	594
HphI	GGTGA	3 cut(s)	457, 749, 824
Hpy166II	GTNNAC	5 cut(s)	148, 246, 355, 649, 714
Hpy188I	TCNGA	3 cut(s)	114, 182, 849
Hpy188III	TCNNGA	5 cut(s)	263, 594, 869, 914, 989
Hpy8I	GTNNAC	5 cut(s)	148, 246, 355, 649, 714
HpyAV	CCTTC	4 cut(s)	457, 562, 751, 1057
HpyCH4III	ACNGT	4 cut(s)	58, 507, 676, 908
HpyCH4V	TGCA	9 cut(s)	87, 148, 172, 385, 407, 532, 861, 1040, 1046
HpyF10VI	GCNNNNNNNGC	7 cut(s)	89, 338, 391, 428, 661, 858, 1046
HpyF3I	CTNAG	3 cut(s)	39, 333, 1068
Hsp92II	CATG	6 cut(s)	87, 345, 627, 668, 720, 774
Kpn2I	TCCGGA	1 cut(s)	593
Kzo9I	GATC	6 cut(s)	216, 259, 313, 844, 894, 985
LmnI	GCTCC	1 cut(s)	971
Lsp1109I	GCAGC	4 cut(s)	283, 415, 419, 1058
LweI	GCATC	6 cut(s)	81, 519, 751, 848, 1027, 1049
MaeI	CTAG	3 cut(s)	221, 263, 660
MaeIII	GTNAC	1 cut(s)	493
MalI	GATC	6 cut(s)	218, 261, 315, 846, 896, 987
MboI	GATC	6 cut(s)	216, 259, 313, 844, 894, 985
MboII	GAAGA	5 cut(s)	107, 308, 934, 942, 1046
MfeI	CAATTG	2 cut(s)	249, 603
MflI	RGATCY	2 cut(s)	313, 985
MhlI	GDGCHC	3 cut(s)	150, 854, 968
MluCI	AATT	9 cut(s)	152, 191, 212, 249, 433, 585, 603, 836, 917
MlyI	GAGTC	1 cut(s)	710
MmeI	TCCRAC	1 cut(s)	489
MnlI	CCTC	8 cut(s)	508, 558, 627, 680, 689, 728, 824, 918
Mph1103I	ATGCAT	2 cut(s)	534, 1042
MroI	TCCGGA	1 cut(s)	593
MseI	TTAA	2 cut(s)	819, 903
MslI	CAYNNNNRTG	1 cut(s)	376
MspA1I	CMGCKG	2 cut(s)	410, 526
MspI	CCGG	1 cut(s)	594
MspR9I	CCNGG	1 cut(s)	997
MunI	CAATTG	2 cut(s)	249, 603
Mva1269I	GAATGC	1 cut(s)	655
MvaI	CCWGG	1 cut(s)	997
MwoI	GCNNNNNNNGC	7 cut(s)	89, 338, 391, 428, 661, 858, 1046
NdeI	CATATG	1 cut(s)	136
NdeII	GATC	6 cut(s)	216, 259, 313, 844, 894, 985
NlaIII	CATG	6 cut(s)	87, 345, 627, 668, 720, 774
NlaIV	GGNNCC	2 cut(s)	670, 967
NsiI	ATGCAT	2 cut(s)	534, 1042
NspI	RCATGY	2 cut(s)	87, 720
PaeI	GCATGC	1 cut(s)	87
PciI	ACATGT	1 cut(s)	716
PctI	GAATGC	1 cut(s)	655
PfeI	GAWTC	3 cut(s)	158, 177, 865
PkrI	GCNGC	5 cut(s)	298, 340, 409, 430, 1048
PleI	GAGTC	1 cut(s)	709
PpsI	GAGTC	1 cut(s)	709
PscI	ACATGT	1 cut(s)	716
Psp6I	CCWGG	1 cut(s)	995
PspGI	CCWGG	1 cut(s)	995
PspN4I	GGNNCC	2 cut(s)	670, 967
PstI	CTGCAG	1 cut(s)	1048
PsuI	RGATCY	2 cut(s)	313, 985
PvuII	CAGCTG	1 cut(s)	410
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
RseI	CAYNNNNRTG	1 cut(s)	376
SaqAI	TTAA	2 cut(s)	819, 903
SatI	GCNGC	5 cut(s)	297, 339, 408, 429, 1047
Sau3AI	GATC	6 cut(s)	216, 259, 313, 844, 894, 985
SchI	GAGTC	1 cut(s)	710
ScrFI	CCNGG	1 cut(s)	997
SduI	GDGCHC	3 cut(s)	150, 854, 968
SfaNI	GCATC	6 cut(s)	81, 519, 751, 848, 1027, 1049
SfcI	CTRYAG	1 cut(s)	1044
SmiMI	CAYNNNNRTG	1 cut(s)	376
SphI	GCATGC	1 cut(s)	87
Sse9I	AATT	9 cut(s)	152, 191, 212, 249, 433, 585, 603, 836, 917
SsiI	CCGC	4 cut(s)	227, 338, 526, 962
SspMI	CTAG	3 cut(s)	221, 263, 660
StyD4I	CCNGG	1 cut(s)	995
TaaI	ACNGT	4 cut(s)	58, 507, 676, 908
TaqI	TCGA	2 cut(s)	897, 913
TasI	AATT	9 cut(s)	152, 191, 212, 249, 433, 585, 603, 836, 917
TatI	WGTACW	1 cut(s)	387
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	3 cut(s)	158, 177, 865
Tru1I	TTAA	2 cut(s)	819, 903
Tru9I	TTAA	2 cut(s)	819, 903
TscAI	CASTG	1 cut(s)	679
TseI	GCWGC	4 cut(s)	296, 407, 428, 1046
TspDTI	ATGAA	1 cut(s)	150
TspGWI	ACGGA	1 cut(s)	1035
TspRI	CASTG	1 cut(s)	679
VneI	GTGCAC	1 cut(s)	146
XagI	CCTNNNNNAGG	1 cut(s)	332
XapI	RAATTY	3 cut(s)	152, 191, 585
XbaI	TCTAGA	1 cut(s)	262
XceI	RCATGY	2 cut(s)	87, 720
XmiI	GTMKAC	2 cut(s)	648, 713
XspI	CTAG	3 cut(s)	221, 263, 660
Zsp2I	ATGCAT	2 cut(s)	534, 1042

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.