Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001147

Physical Location & Seq

Genomic Coordinates Forward (+)

34027006 .. 34030038

Gene Structure 3033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G374900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGCTAGAGGGGTGCCCGAGAATCCTTCTGAGCAAGGGATTGCTGAGGCTTCAACTAGCATGTGCATTCCGGAACCAGAAGAACCTCAGTGCTCTATGCGTAAGTGGTATTTTACAAGACAGGAAATAGAAGATCAATCTCCATCGCGGAGGGATGGCATCAGCCTCAAGAAAGAGTCACAATTGCGGGATTCCTATTGCTCATTTCTTCAAGCGATTGGGATGAAGCTTAAAGTATCTCAAACGACTATAGCATGTGCAATGATGTTGTGCCACCGGTTTTACATGCGTCAATCTCATGCTAAGAATGGTTGGCAGGTAATTGCAACTGCAAGCTTCTTTCTTGCTTGCAAAGTACGAGACACACCATGCTTTCTGAAGGATGTTGTTGTTGTGGCATATGAGATGGTGCACAAATTGGATCCTTCTGCCTTACAAAGCATCAGACAAAGAGAAGTTTTCAATAAGCAAAAGGAATTGATTATAGTTGGGGAGAGACTTCTTTTGTCCACAATTGGTTTTGATCTTGACATCCAGCTTCCATACGCATCACTTGTTGCAGCTTTAAAGAGTTTAAATATTCTACCTGACCTTGCTCAGATGGCGTTGAATTTTGTTAATGATTGTGTCCGAACATCACTGTGCTTGCAGTACAAGCCCCATTATATTGCAGCTGGTTCAGTGGCTCTTGCTGCCAAAATTCAAAAAGTGAAATTACCTACACAGCAGGGAAAAGTTTGGTGGCTTGAGTTTGATGTTTCGCCGAAGCAGTTAAATGAGGTCATTCAGCGGATGATGAGGCCAGACAGAAAACAAGCTCTAGCACCTGAAAATGGGAGAGTCATTGAATCTGAAACTATACCGAGAAAGCAAAGTGGTATTGATGAGGATGGTAGTGCTCAGATTAAACAAATCAAAGGAGAATTGGATGATCGGAACTCAAGATGCAAGACTGATTCTGTTCATAATAACTGTGTTAAGATTGATATTAACCGGATTAGAGATGCTATAAAGAGGAAAAGATGTGAAAGAAGTGTAAATAAGAAGGTGGTGCACGCCACAGATGATGAGATAGATACTGAAGCCTGGATAGAAAGTGAGCTCGAAAATGGAGTAGAGCTAGAAGATACATCCGCAAAGAAGAAACAAAGGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

386

Amino Acids

43.77

Weight (kDa)

8.62

Isoelectric Point (pI)

53.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630
fragaria_vesca	FvH4_2g39390 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420
malus_domestica	MD04G1049900.v1.1 MD06G1050000.v1.1 MD08G1026200.v1.1
prunus_persica	Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1
pyrus_communis	pycom04g04390 pycom06g04230 pycom06g04240 pycom08g02030
rosa_chinensis	RchiOBHm_Chr2g0168341 RchiOBHm_Chr3g0451061 RchiOBHm_Chr6g0301611
rosa_laevigata	RLG00000011239 RLG00000021768 RLG00000025695
rosa_multiflora	Rmu_co8487951.1_g000001 Rmu_sc0000078.1_g000004 Rmu_sc0016462.1_g000004 Rmu_ssc0000452.1_g000012
rosa_roxburghii	Rroxscaffold_2G00083130 Rroxscaffold_7G00166600
rosa_rugosa	Rorug02G0532800 Rorug02G0532900 Rorug02G0533000 Rorug02G0533000 Rorug02G0630800 Rorug06G0307200 Rorug06G0307300
rosa_samantha	Rh2AG602100 Rh2BG615400 Rh2CG583100 Rh2DG625600 Rh3AG033200 Rh3BG033500 Rh3CG032200 Rh3DG033200 Rh6AG420100 Rh6BG426200 Rh6CG433100 Rh6DG419500
rosa_wichuraiana	Rw0G019830 Rw2G049980 Rw3G002440 Rw6G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	307
AccB1I	GGYRCC	1 cut(s)	13
AccII	CGCG	1 cut(s)	148
AccIII	TCCGGA	1 cut(s)	70
AciI	CCGC	4 cut(s)	148, 187, 790, 1134
AclWI	GGATC	2 cut(s)	416, 429
AcsI	RAATTY	2 cut(s)	610, 699
AcuI	CTGAAG	2 cut(s)	398, 1101
AfaI	GTAC	2 cut(s)	357, 653
AfiI	CCNNNNNNNGG	1 cut(s)	833
AgeI	ACCGGT	1 cut(s)	276
AgsI	TTSAA	6 cut(s)	54, 212, 463, 610, 704, 848
AjnI	CCWGG	1 cut(s)	1085
AluBI	AGCT	8 cut(s)	229, 336, 538, 563, 674, 818, 1102, 1120
AluI	AGCT	8 cut(s)	229, 336, 538, 563, 674, 818, 1102, 1120
Alw21I	GWGCWC	5 cut(s)	95, 414, 901, 1056, 1104
Alw26I	GTCTC	2 cut(s)	354, 490
Alw44I	GTGCAC	2 cut(s)	410, 1052
AlwI	GGATC	2 cut(s)	416, 429
Ama87I	CYCGRG	1 cut(s)	17
Aor13HI	TCCGGA	1 cut(s)	70
AoxI	GGCC	1 cut(s)	800
ApaLI	GTGCAC	2 cut(s)	410, 1052
ApeKI	GCWGC	3 cut(s)	560, 671, 692
ApoI	RAATTY	2 cut(s)	610, 699
AsiGI	ACCGGT	1 cut(s)	276
AvaI	CYCGRG	1 cut(s)	17
BaeGI	GKGCMC	3 cut(s)	18, 414, 1056
BamHI	GGATCC	1 cut(s)	421
BanI	GGYRCC	1 cut(s)	13
BanII	GRGCYC	1 cut(s)	1104
Bbv12I	GWGCWC	5 cut(s)	95, 414, 901, 1056, 1104
BbvCI	CCTCAGC	1 cut(s)	45
BbvI	GCAGC	3 cut(s)	572, 679, 683
BccI	CCATC	5 cut(s)	149, 151, 400, 595, 884
BciT130I	CCWGG	1 cut(s)	1087
BcoDI	GTCTC	2 cut(s)	354, 490
BfaI	CTAG	4 cut(s)	6, 57, 821, 1121
BfmI	CTRYAG	1 cut(s)	249
BfuAI	ACCTGC	1 cut(s)	307
BisI	GCNGC	3 cut(s)	561, 672, 693
BlsI	GCNGC	3 cut(s)	562, 673, 694
Bme1390I	CCNGG	1 cut(s)	1087
BmeT110I	CYCGRG	1 cut(s)	17
BmiI	GGNNCC	3 cut(s)	15, 75, 423
BmrFI	CCNGG	1 cut(s)	1087
BmsI	GCATC	5 cut(s)	168, 450, 557, 935, 994
Bpu10I	CCTNAGC	1 cut(s)	45
BpuEI	CTTGAG	3 cut(s)	152, 767, 925
BsaWI	WCCGGW	3 cut(s)	70, 276, 993
Bsc4I	CCNNNNNNNGG	1 cut(s)	833
Bse118I	RCCGGY	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	267
BseAI	TCCGGA	1 cut(s)	70
BseBI	CCWGG	1 cut(s)	1087
BseGI	GGATG	8 cut(s)	160, 228, 388, 531, 798, 895, 934, 1130
BseLI	CCNNNNNNNGG	1 cut(s)	833
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	5 cut(s)	21, 36, 101, 611, 914
BseSI	GKGCMC	3 cut(s)	18, 414, 1056
BseXI	GCAGC	3 cut(s)	572, 679, 683
Bsh1236I	CGCG	1 cut(s)	148
BshFI	GGCC	1 cut(s)	802
BshNI	GGYRCC	1 cut(s)	13
BshTI	ACCGGT	1 cut(s)	276
BsiHKAI	GWGCWC	5 cut(s)	95, 414, 901, 1056, 1104
BsiHKCI	CYCGRG	1 cut(s)	17
BsiSI	CCGG	3 cut(s)	71, 277, 994
BslI	CCNNNNNNNGG	1 cut(s)	833
BsmAI	GTCTC	2 cut(s)	354, 490
BsmI	GAATGC	1 cut(s)	66
BsnI	GGCC	1 cut(s)	802
BsoBI	CYCGRG	1 cut(s)	17
Bsp1286I	GDGCHC	6 cut(s)	18, 95, 414, 901, 1056, 1104
Bsp13I	TCCGGA	1 cut(s)	70
Bsp143I	GATC	4 cut(s)	133, 421, 523, 931
BspACI	CCGC	4 cut(s)	148, 187, 790, 1134
BspANI	GGCC	1 cut(s)	802
BspCNI	CTCAG	5 cut(s)	22, 37, 100, 610, 913
BspEI	TCCGGA	1 cut(s)	70
BspFNI	CGCG	1 cut(s)	148
BspLI	GGNNCC	3 cut(s)	15, 75, 423
BspMI	ACCTGC	1 cut(s)	307
BspPI	GGATC	2 cut(s)	416, 429
BspT107I	GGYRCC	1 cut(s)	13
BsrDI	GCAATG	1 cut(s)	267
BsrFI	RCCGGY	1 cut(s)	276
BssAI	RCCGGY	1 cut(s)	276
BssMI	GATC	4 cut(s)	133, 421, 523, 931
Bst2UI	CCWGG	1 cut(s)	1087
Bst4CI	ACNGT	2 cut(s)	642, 974
BstC8I	GCNNGC	4 cut(s)	334, 349, 647, 1056
BstDEI	CTNAG	6 cut(s)	30, 45, 87, 303, 597, 900
BstF5I	GGATG	8 cut(s)	160, 228, 388, 531, 798, 895, 934, 1130
BstFNI	CGCG	1 cut(s)	148
BstKTI	GATC	4 cut(s)	136, 424, 526, 934
BstMAI	GTCTC	2 cut(s)	354, 490
BstMBI	GATC	4 cut(s)	133, 421, 523, 931
BstMWI	GCNNNNNNNGC	3 cut(s)	602, 655, 692
BstNI	CCWGG	1 cut(s)	1087
BstNSI	RCATGY	3 cut(s)	64, 258, 289
BstSCI	CCNGG	1 cut(s)	1085
BstSFI	CTRYAG	1 cut(s)	249
BstSLI	GKGCMC	3 cut(s)	18, 414, 1056
BstUI	CGCG	1 cut(s)	148
BstV1I	GCAGC	3 cut(s)	572, 679, 683
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
BsuRI	GGCC	1 cut(s)	802
BtgZI	GCGATG	1 cut(s)	129
BtsCI	GGATG	8 cut(s)	160, 228, 388, 531, 798, 895, 934, 1130
BtsIMutI	CAGTG	3 cut(s)	95, 638, 687
BveI	ACCTGC	1 cut(s)	307
Cac8I	GCNNGC	4 cut(s)	334, 349, 647, 1056
Cfr10I	RCCGGY	1 cut(s)	276
CseI	GACGC	1 cut(s)	278
Csp6I	GTAC	2 cut(s)	356, 652
CspAI	ACCGGT	1 cut(s)	276
CviAII	CATG	5 cut(s)	61, 255, 286, 299, 369
CviQI	GTAC	2 cut(s)	356, 652
DdeI	CTNAG	6 cut(s)	30, 45, 87, 303, 597, 900
DpnI	GATC	4 cut(s)	135, 423, 525, 933
DpnII	GATC	4 cut(s)	133, 421, 523, 931
DraI	TTTAAA	2 cut(s)	567, 576
Ecl136II	GAGCTC	1 cut(s)	1102
Eco24I	GRGCYC	1 cut(s)	1104
Eco53kI	GAGCTC	1 cut(s)	1102
Eco57I	CTGAAG	2 cut(s)	398, 1101
Eco88I	CYCGRG	1 cut(s)	17
EcoICRI	GAGCTC	1 cut(s)	1102
EcoRII	CCWGG	1 cut(s)	1085
EcoT38I	GRGCYC	1 cut(s)	1104
FaeI	CATG	5 cut(s)	64, 258, 289, 302, 372
FatI	CATG	5 cut(s)	60, 254, 285, 298, 368
FauI	CCCGC	1 cut(s)	180
FauNDI	CATATG	1 cut(s)	400
Fnu4HI	GCNGC	3 cut(s)	561, 672, 693
FokI	GGATG	8 cut(s)	167, 235, 395, 518, 805, 902, 941, 1117
FriOI	GRGCYC	1 cut(s)	1104
Fsp4HI	GCNGC	3 cut(s)	561, 672, 693
FspBI	CTAG	4 cut(s)	6, 57, 821, 1121
GluI	GCNGC	3 cut(s)	561, 672, 693
HaeIII	GGCC	1 cut(s)	802
HapII	CCGG	3 cut(s)	71, 277, 994
HgaI	GACGC	1 cut(s)	278
Hin1II	CATG	5 cut(s)	64, 258, 289, 302, 372
HindIII	AAGCTT	2 cut(s)	227, 334
HinfI	GANTC	6 cut(s)	22, 176, 191, 840, 848, 956
HpaII	CCGG	3 cut(s)	71, 277, 994
Hpy166II	GTNNAC	3 cut(s)	412, 510, 1054
Hpy188I	TCNGA	8 cut(s)	31, 378, 446, 600, 632, 853, 903, 936
Hpy188III	TCNNGA	4 cut(s)	71, 169, 527, 942
Hpy8I	GTNNAC	3 cut(s)	412, 510, 1054
HpyAV	CCTTC	4 cut(s)	36, 373, 435, 1039
HpyCH4III	ACNGT	2 cut(s)	642, 974
HpyF10VI	GCNNNNNNNGC	3 cut(s)	602, 655, 692
HpyF3I	CTNAG	6 cut(s)	30, 45, 87, 303, 597, 900
Hsp92II	CATG	5 cut(s)	64, 258, 289, 302, 372
Kpn2I	TCCGGA	1 cut(s)	70
Kzo9I	GATC	4 cut(s)	133, 421, 523, 931
Lsp1109I	GCAGC	3 cut(s)	572, 679, 683
LweI	GCATC	5 cut(s)	168, 450, 557, 935, 994
MaeI	CTAG	4 cut(s)	6, 57, 821, 1121
MaeIII	GTNAC	1 cut(s)	177
MalI	GATC	4 cut(s)	135, 423, 525, 933
MboI	GATC	4 cut(s)	133, 421, 523, 931
MboII	GAAGA	5 cut(s)	92, 143, 200, 1136, 1153
MfeI	CAATTG	2 cut(s)	182, 513
MflI	RGATCY	1 cut(s)	421
MhlI	GDGCHC	6 cut(s)	18, 95, 414, 901, 1056, 1104
MluCI	AATT	9 cut(s)	182, 321, 416, 476, 513, 610, 699, 713, 923
MlyI	GAGTC	2 cut(s)	185, 849
MnlI	CCTC	8 cut(s)	40, 96, 144, 176, 772, 792, 880, 1008
MroI	TCCGGA	1 cut(s)	70
MseI	TTAA	8 cut(s)	231, 566, 575, 618, 773, 906, 978, 990
MslI	CAYNNNNRTG	1 cut(s)	640
MspA1I	CMGCKG	2 cut(s)	674, 790
MspI	CCGG	3 cut(s)	71, 277, 994
MspR9I	CCNGG	1 cut(s)	1087
MunI	CAATTG	2 cut(s)	182, 513
Mva1269I	GAATGC	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	1087
MvnI	CGCG	1 cut(s)	148
MwoI	GCNNNNNNNGC	3 cut(s)	602, 655, 692
NdeI	CATATG	1 cut(s)	400
NdeII	GATC	4 cut(s)	133, 421, 523, 931
NlaIII	CATG	5 cut(s)	64, 258, 289, 302, 372
NlaIV	GGNNCC	3 cut(s)	15, 75, 423
NmuCI	GTSAC	1 cut(s)	177
NspI	RCATGY	3 cut(s)	64, 258, 289
PctI	GAATGC	1 cut(s)	66
PfeI	GAWTC	4 cut(s)	22, 191, 848, 956
PinAI	ACCGGT	1 cut(s)	276
PkrI	GCNGC	3 cut(s)	562, 673, 694
PleI	GAGTC	2 cut(s)	184, 848
PpsI	GAGTC	2 cut(s)	184, 848
Psp124BI	GAGCTC	1 cut(s)	1104
Psp6I	CCWGG	1 cut(s)	1085
PspGI	CCWGG	1 cut(s)	1085
PspN4I	GGNNCC	3 cut(s)	15, 75, 423
PsuI	RGATCY	1 cut(s)	421
PvuII	CAGCTG	1 cut(s)	674
RsaI	GTAC	2 cut(s)	357, 653
RsaNI	GTAC	2 cut(s)	356, 652
RseI	CAYNNNNRTG	1 cut(s)	640
SacI	GAGCTC	1 cut(s)	1104
SaqAI	TTAA	8 cut(s)	231, 566, 575, 618, 773, 906, 978, 990
SatI	GCNGC	3 cut(s)	561, 672, 693
Sau3AI	GATC	4 cut(s)	133, 421, 523, 931
SchI	GAGTC	2 cut(s)	185, 849
ScrFI	CCNGG	1 cut(s)	1087
SduI	GDGCHC	6 cut(s)	18, 95, 414, 901, 1056, 1104
SfaNI	GCATC	5 cut(s)	168, 450, 557, 935, 994
SfcI	CTRYAG	1 cut(s)	249
SmiMI	CAYNNNNRTG	1 cut(s)	640
SmlI	CTYRAG	3 cut(s)	167, 746, 940
SmoI	CTYRAG	3 cut(s)	167, 746, 940
Sse9I	AATT	9 cut(s)	182, 321, 416, 476, 513, 610, 699, 713, 923
SsiI	CCGC	4 cut(s)	148, 187, 790, 1134
SspI	AATATT	1 cut(s)	580
SspMI	CTAG	4 cut(s)	6, 57, 821, 1121
SstI	GAGCTC	1 cut(s)	1104
StyD4I	CCNGG	1 cut(s)	1085
TaaI	ACNGT	2 cut(s)	642, 974
TaqI	TCGA	1 cut(s)	1104
TasI	AATT	9 cut(s)	182, 321, 416, 476, 513, 610, 699, 713, 923
TatI	WGTACW	1 cut(s)	651
TfiI	GAWTC	4 cut(s)	22, 191, 848, 956
Tru1I	TTAA	8 cut(s)	231, 566, 575, 618, 773, 906, 978, 990
Tru9I	TTAA	8 cut(s)	231, 566, 575, 618, 773, 906, 978, 990
TscAI	CASTG	3 cut(s)	95, 645, 687
TseFI	GTSAC	1 cut(s)	177
TseI	GCWGC	3 cut(s)	560, 671, 692
Tsp45I	GTSAC	1 cut(s)	177
TspDTI	ATGAA	2 cut(s)	239, 953
TspRI	CASTG	3 cut(s)	95, 645, 687
VneI	GTGCAC	2 cut(s)	410, 1052
XapI	RAATTY	2 cut(s)	610, 699
XceI	RCATGY	3 cut(s)	64, 258, 289
XspI	CTAG	4 cut(s)	6, 57, 821, 1121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.