Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000078.1

Orthogroup ID

OG0001147

Physical Location & Seq

Genomic Coordinates Reverse (-)

7147 .. 11077

Gene Structure 3931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000078.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

atgcccaacaccctttcccgccaaaacgagccgaagcagttttcttcctctccgctcaaagatcaaaccctaaacctccaaagccccctttactcggatcaccctcctccagacccgaaacatcgacccgatttggagattcggagctccaggaaattgcggcggtcctactcgttgttgcttcaagagattgggacgaagcttaaagtgcctcatctgacaattgcaactgcaaagatgttgtgccactgcttttatatgcatcagtctcatgctaagaatgattggcagactattgcaactgcttgcatccttgtcgcctgcaaagtggacgacgcaccacactttctgagtgatgttgcttttgtggcatatgagatagcacacaagtttaatccgtctgccttagagagtatcagacaaagagaatttttcagaaagcaaaaggagttgattgtagtggcggagaaagctctattgacaacaattgactttgatcttgacattcagcttacatacaagacacttgttgtggttctaaagagattaaatatccctgacctcgctaaggttgctaaggtggcatggcatcttattgatcagtggcttcaaacatcactgtgcctgcagtacaagccccattacattgctgctggttcaattgctcttgttgctagaattctagaagtcaaactacctacagagaagggaaaaatttggtggttggagattgatgtggcgccggaacaattagatgaaggttacaactatgctactacgaaggaagctttaccaccatctcaggtaagtgatagtggtcctgagattaaagcattcatcaccttgctccggtcgtccctctggcatcctcttgcggcgattctaggtggtggcggcgatagaaggcggcgaaatttgaggaaatcggacccgaacggttctctgatctccgacgtcggcgaagcttcaaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

324

Amino Acids

36.59

Weight (kDa)

8.94

Isoelectric Point (pI)

66.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630
fragaria_vesca	FvH4_2g39390 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420
malus_domestica	MD04G1049900.v1.1 MD06G1050000.v1.1 MD08G1026200.v1.1
prunus_persica	Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1
pyrus_communis	pycom04g04390 pycom06g04230 pycom06g04240 pycom08g02030
rosa_chinensis	RchiOBHm_Chr2g0168341 RchiOBHm_Chr3g0451061 RchiOBHm_Chr6g0301611
rosa_laevigata	RLG00000011239 RLG00000021768 RLG00000025695
rosa_multiflora	Rmu_co8487951.1_g000001 Rmu_sc0000078.1_g000004 Rmu_sc0016462.1_g000004 Rmu_ssc0000452.1_g000012
rosa_roxburghii	Rroxscaffold_2G00083130 Rroxscaffold_7G00166600
rosa_rugosa	Rorug02G0532800 Rorug02G0532900 Rorug02G0533000 Rorug02G0533000 Rorug02G0630800 Rorug06G0307200 Rorug06G0307300
rosa_samantha	Rh2AG602100 Rh2BG615400 Rh2CG583100 Rh2DG625600 Rh3AG033200 Rh3BG033500 Rh3CG032200 Rh3DG033200 Rh6AG420100 Rh6BG426200 Rh6CG433100 Rh6DG419500
rosa_wichuraiana	Rw0G019830 Rw2G049980 Rw3G002440 Rw6G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	957
AccB1I	GGYRCC	1 cut(s)	739
AccBSI	CCGCTC	1 cut(s)	55
AciI	CCGC	8 cut(s)	19, 53, 160, 163, 464, 875, 894, 907
AclWI	GGATC	1 cut(s)	105
AcsI	RAATTY	4 cut(s)	428, 678, 714, 913
AcyI	GRCGYC	2 cut(s)	740, 954
AfaI	GTAC	1 cut(s)	632
AfiI	CCNNNNNNNGG	3 cut(s)	94, 568, 849
AgsI	TTSAA	4 cut(s)	185, 611, 660, 969
AjnI	CCWGG	1 cut(s)	149
AluBI	AGCT	6 cut(s)	147, 202, 473, 511, 788, 965
AluI	AGCT	6 cut(s)	147, 202, 473, 511, 788, 965
Alw21I	GWGCWC	1 cut(s)	149
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	105
ApeKI	GCWGC	1 cut(s)	650
ApoI	RAATTY	4 cut(s)	428, 678, 714, 913
AspLEI	GCGC	1 cut(s)	742
AspS9I	GGNCC	3 cut(s)	165, 818, 928
AsuHPI	GGTGA	2 cut(s)	92, 832
AvaII	GGWCC	3 cut(s)	165, 818, 928
BanI	GGYRCC	1 cut(s)	739
BanII	GRGCYC	1 cut(s)	149
BarI	GAAGNNNNNNTAC	2 cut(s)	678, 710
Bbv12I	GWGCWC	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	637
BccI	CCATC	1 cut(s)	805
BcgI	CGANNNNNNTGC	2 cut(s)	298, 332
BciT130I	CCWGG	1 cut(s)	151
BclI	TGATCA	1 cut(s)	598
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	4 cut(s)	675, 683, 884, 973
BfmI	CTRYAG	2 cut(s)	626, 699
BfoI	RGCGCY	1 cut(s)	743
BisI	GCNGC	5 cut(s)	161, 651, 876, 895, 908
BlsI	GCNGC	5 cut(s)	162, 652, 877, 896, 909
Bme1390I	CCNGG	1 cut(s)	151
Bme18I	GGWCC	3 cut(s)	165, 818, 928
BmgT120I	GGNCC	3 cut(s)	165, 818, 928
BmiI	GGNNCC	2 cut(s)	741, 930
BmrFI	CCNGG	1 cut(s)	151
BmsI	GCATC	4 cut(s)	271, 318, 598, 874
BpmI	CTGGAG	2 cut(s)	93, 133
Bpu10I	CCTNAGC	2 cut(s)	567, 576
BsaHI	GRCGYC	2 cut(s)	740, 954
BsaWI	WCCGGW	1 cut(s)	849
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 568, 849
Bse3DI	GCAATG	1 cut(s)	645
BseBI	CCWGG	1 cut(s)	151
BseGI	GGATG	2 cut(s)	309, 865
BseLI	CCNNNNNNNGG	3 cut(s)	94, 568, 849
BseMI	GCAATG	1 cut(s)	645
BseMII	CTCAG	3 cut(s)	341, 813, 815
BseRI	GAGGAG	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	637
Bsh1285I	CGRYCG	1 cut(s)	854
BshNI	GGYRCC	1 cut(s)	739
BsiEI	CGRYCG	1 cut(s)	854
BsiHKAI	GWGCWC	1 cut(s)	149
BsiSI	CCGG	2 cut(s)	743, 850
BslFI	GGGAC	2 cut(s)	208, 841
BslI	CCNNNNNNNGG	3 cut(s)	94, 568, 849
BsmAI	GTCTC	1 cut(s)	273
BsmFI	GGGAC	2 cut(s)	208, 841
BsmI	GAATGC	1 cut(s)	833
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp143I	GATC	5 cut(s)	61, 97, 496, 598, 945
BspACI	CCGC	8 cut(s)	19, 53, 160, 163, 464, 875, 894, 907
BspCNI	CTCAG	3 cut(s)	342, 814, 814
BspLI	GGNNCC	2 cut(s)	741, 930
BspMAI	CTGCAG	1 cut(s)	630
BspPI	GGATC	1 cut(s)	105
BspT107I	GGYRCC	1 cut(s)	739
BsrBI	CCGCTC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	645
BssMI	GATC	5 cut(s)	61, 97, 496, 598, 945
BssNI	GRCGYC	2 cut(s)	740, 954
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	2 cut(s)	621, 938
BstACI	GRCGYC	2 cut(s)	740, 954
BstC8I	GCNNGC	3 cut(s)	307, 322, 626
BstDEI	CTNAG	7 cut(s)	276, 350, 406, 567, 576, 801, 822
BstENI	CCTNNNNNAGG	1 cut(s)	566
BstF5I	GGATG	2 cut(s)	309, 865
BstH2I	RGCGCY	1 cut(s)	743
BstHHI	GCGC	1 cut(s)	742
BstKTI	GATC	5 cut(s)	64, 100, 499, 601, 948
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	5 cut(s)	61, 97, 496, 598, 945
BstMCI	CGRYCG	1 cut(s)	854
BstMWI	GCNNNNNNNGC	7 cut(s)	208, 368, 470, 572, 581, 634, 671
BstNI	CCWGG	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	149
BstSFI	CTRYAG	2 cut(s)	626, 699
BstV1I	GCAGC	1 cut(s)	637
BtsCI	GGATG	2 cut(s)	309, 865
BtsI	GCAGTG	1 cut(s)	247
BtsIMutI	CAGTG	3 cut(s)	247, 608, 617
Cac8I	GCNNGC	3 cut(s)	307, 322, 626
CfoI	GCGC	1 cut(s)	742
Cfr13I	GGNCC	3 cut(s)	165, 818, 928
CseI	GACGC	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	631
CviAII	CATG	2 cut(s)	272, 585
CviQI	GTAC	1 cut(s)	631
DdeI	CTNAG	7 cut(s)	276, 350, 406, 567, 576, 801, 822
DinI	GGCGCC	1 cut(s)	741
DpnI	GATC	5 cut(s)	63, 99, 498, 600, 947
DpnII	GATC	5 cut(s)	61, 97, 496, 598, 945
EciI	GGCGGA	1 cut(s)	479
Ecl136II	GAGCTC	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	149
Eco47I	GGWCC	3 cut(s)	165, 818, 928
Eco53kI	GAGCTC	1 cut(s)	147
EcoICRI	GAGCTC	1 cut(s)	147
EcoNI	CCTNNNNNAGG	1 cut(s)	566
EcoRI	GAATTC	1 cut(s)	678
EcoRII	CCWGG	1 cut(s)	149
EcoT22I	ATGCAT	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	149
EgeI	GGCGCC	1 cut(s)	741
EheI	GGCGCC	1 cut(s)	741
FaeI	CATG	2 cut(s)	275, 588
FaiI	YATR	8 cut(s)	258, 260, 273, 373, 375, 517, 586, 771
FaqI	GGGAC	2 cut(s)	208, 841
FatI	CATG	2 cut(s)	271, 584
FauI	CCCGC	1 cut(s)	26
FauNDI	CATATG	1 cut(s)	373
FbaI	TGATCA	1 cut(s)	598
Fnu4HI	GCNGC	5 cut(s)	161, 651, 876, 895, 908
FokI	GGATG	2 cut(s)	296, 852
FriOI	GRGCYC	1 cut(s)	149
Fsp4HI	GCNGC	5 cut(s)	161, 651, 876, 895, 908
FspBI	CTAG	4 cut(s)	675, 683, 884, 973
GlaI	GCGC	1 cut(s)	741
GluI	GCNGC	5 cut(s)	161, 651, 876, 895, 908
GsuI	CTGGAG	2 cut(s)	93, 133
HaeII	RGCGCY	1 cut(s)	743
HapII	CCGG	2 cut(s)	743, 850
HgaI	GACGC	1 cut(s)	344
HhaI	GCGC	1 cut(s)	742
Hin1I	GRCGYC	2 cut(s)	740, 954
Hin1II	CATG	2 cut(s)	275, 588
Hin6I	GCGC	1 cut(s)	740
HinP1I	GCGC	1 cut(s)	740
HindIII	AAGCTT	3 cut(s)	200, 786, 963
HinfI	GANTC	2 cut(s)	139, 880
HpaII	CCGG	2 cut(s)	743, 850
HphI	GGTGA	2 cut(s)	92, 832
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188I	TCNGA	9 cut(s)	97, 144, 219, 351, 419, 437, 928, 945, 952
Hpy188III	TCNNGA	5 cut(s)	110, 185, 500, 683, 821
Hpy8I	GTNNAC	1 cut(s)	331
Hpy99I	CGWCG	3 cut(s)	338, 956, 959
HpyAV	CCTTC	4 cut(s)	700, 752, 775, 897
HpyCH4III	ACNGT	2 cut(s)	621, 938
HpyCH4IV	ACGT	1 cut(s)	954
HpyCH4V	TGCA	7 cut(s)	227, 233, 262, 299, 309, 324, 628
HpyF10VI	GCNNNNNNNGC	7 cut(s)	208, 368, 470, 572, 581, 634, 671
HpyF3I	CTNAG	7 cut(s)	276, 350, 406, 567, 576, 801, 822
HpySE526I	ACGT	1 cut(s)	954
Hsp92I	GRCGYC	2 cut(s)	740, 954
Hsp92II	CATG	2 cut(s)	275, 588
HspAI	GCGC	1 cut(s)	740
KasI	GGCGCC	1 cut(s)	739
Ksp22I	TGATCA	1 cut(s)	598
Kzo9I	GATC	5 cut(s)	61, 97, 496, 598, 945
LmnI	GCTCC	3 cut(s)	144, 152, 852
Lsp1109I	GCAGC	1 cut(s)	637
LweI	GCATC	4 cut(s)	271, 318, 598, 874
MaeI	CTAG	4 cut(s)	675, 683, 884, 973
MaeII	ACGT	1 cut(s)	954
MaeIII	GTNAC	1 cut(s)	761
MalI	GATC	5 cut(s)	63, 99, 498, 600, 947
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	5 cut(s)	61, 97, 496, 598, 945
MboII	GAAGA	1 cut(s)	36
MfeI	CAATTG	3 cut(s)	222, 486, 660
MhlI	GDGCHC	1 cut(s)	149
MluCI	AATT	9 cut(s)	155, 222, 428, 486, 660, 678, 714, 749, 913
Mly113I	GGCGCC	1 cut(s)	740
MmeI	TCCRAC	2 cut(s)	705, 975
MnlI	CCTC	9 cut(s)	58, 86, 114, 117, 222, 572, 869, 879, 912
Mph1103I	ATGCAT	1 cut(s)	264
MseI	TTAA	4 cut(s)	204, 393, 548, 828
MslI	CAYNNNNRTG	1 cut(s)	619
MspI	CCGG	2 cut(s)	743, 850
MspR9I	CCNGG	1 cut(s)	151
MunI	CAATTG	3 cut(s)	222, 486, 660
Mva1269I	GAATGC	1 cut(s)	833
MvaI	CCWGG	1 cut(s)	151
MwoI	GCNNNNNNNGC	7 cut(s)	208, 368, 470, 572, 581, 634, 671
NarI	GGCGCC	1 cut(s)	740
NdeI	CATATG	1 cut(s)	373
NdeII	GATC	5 cut(s)	61, 97, 496, 598, 945
NlaIII	CATG	2 cut(s)	275, 588
NlaIV	GGNNCC	2 cut(s)	741, 930
NsiI	ATGCAT	1 cut(s)	264
PctI	GAATGC	1 cut(s)	833
PfeI	GAWTC	2 cut(s)	139, 880
PfoI	TCCNGGA	1 cut(s)	149
PkrI	GCNGC	5 cut(s)	162, 652, 877, 896, 909
PluTI	GGCGCC	1 cut(s)	743
Psp124BI	GAGCTC	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	2 cut(s)	741, 930
PspPI	GGNCC	3 cut(s)	165, 818, 928
PstI	CTGCAG	1 cut(s)	630
RsaI	GTAC	1 cut(s)	632
RsaNI	GTAC	1 cut(s)	631
RseI	CAYNNNNRTG	1 cut(s)	619
SacI	GAGCTC	1 cut(s)	149
SaqAI	TTAA	4 cut(s)	204, 393, 548, 828
SatI	GCNGC	5 cut(s)	161, 651, 876, 895, 908
Sau3AI	GATC	5 cut(s)	61, 97, 496, 598, 945
Sau96I	GGNCC	3 cut(s)	165, 818, 928
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	149
SfaNI	GCATC	4 cut(s)	271, 318, 598, 874
SfcI	CTRYAG	2 cut(s)	626, 699
SfoI	GGCGCC	1 cut(s)	741
SinI	GGWCC	3 cut(s)	165, 818, 928
SmiMI	CAYNNNNRTG	1 cut(s)	619
Sse9I	AATT	9 cut(s)	155, 222, 428, 486, 660, 678, 714, 749, 913
SsiI	CCGC	8 cut(s)	19, 53, 160, 163, 464, 875, 894, 907
SspDI	GGCGCC	1 cut(s)	739
SspMI	CTAG	4 cut(s)	675, 683, 884, 973
SstI	GAGCTC	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	149
TaaI	ACNGT	2 cut(s)	621, 938
TaiI	ACGT	1 cut(s)	957
TaqI	TCGA	1 cut(s)	124
TasI	AATT	9 cut(s)	155, 222, 428, 486, 660, 678, 714, 749, 913
TatI	WGTACW	1 cut(s)	630
TauI	GCSGC	4 cut(s)	163, 878, 897, 910
TfiI	GAWTC	2 cut(s)	139, 880
Tru1I	TTAA	4 cut(s)	204, 393, 548, 828
Tru9I	TTAA	4 cut(s)	204, 393, 548, 828
TscAI	CASTG	3 cut(s)	254, 608, 624
TseI	GCWGC	1 cut(s)	650
TspDTI	ATGAA	2 cut(s)	771, 826
TspGWI	ACGGA	1 cut(s)	387
TspRI	CASTG	3 cut(s)	254, 608, 624
VpaK11BI	GGWCC	3 cut(s)	165, 818, 928
XagI	CCTNNNNNAGG	1 cut(s)	566
XapI	RAATTY	4 cut(s)	428, 678, 714, 913
XbaI	TCTAGA	1 cut(s)	682
XspI	CTAG	4 cut(s)	675, 683, 884, 973
ZraI	GACGTC	1 cut(s)	955
Zsp2I	ATGCAT	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.