Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001147

Physical Location & Seq

Genomic Coordinates Forward (+)

2306757 .. 2308322

Gene Structure 1566 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41836

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGTATGGCGTGCCTCATCTGACAATTGCAACTGCAAAGATGTTGTGCCACTGCTTTTATATGCATCAGTCTCATGCTAAGAATGATTGGCCGGAATTTTTCAGAAAGCAAAAGGAGTTGATTGTAGTGGCGGAGAAAGCTCTATTGACAACAATTGACTTTGATCTTGACATTCAGCTTACATACAAGACACTTGTTGTGGTTCTAAAGAGATTAAATATCCCTGACCTCGCTAAGGTTGCTAAGGTGGCATGGCATCTTATTGATCAGTGGCTTCAAACATCACTGTGCCTGCAGTACAAGCCCCATTACATTGCTGCTGGTTCAATTGCTCTTGTTGCTAGAATTCTAGAAGTCAAACTACCTACAGAGAAGGGAAAAATTTGGTGGTTGGAGATTGATGTGGCGCCGGAACAATTAGATGTCATTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

144

Amino Acids

16.63

Weight (kDa)

7.7

Isoelectric Point (pI)

52.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630
fragaria_vesca	FvH4_2g39390 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420
malus_domestica	MD04G1049900.v1.1 MD06G1050000.v1.1 MD08G1026200.v1.1
prunus_persica	Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1
pyrus_communis	pycom04g04390 pycom06g04230 pycom06g04240 pycom08g02030
rosa_chinensis	RchiOBHm_Chr2g0168341 RchiOBHm_Chr3g0451061 RchiOBHm_Chr6g0301611
rosa_laevigata	RLG00000011239 RLG00000021768 RLG00000025695
rosa_multiflora	Rmu_co8487951.1_g000001 Rmu_sc0000078.1_g000004 Rmu_sc0016462.1_g000004 Rmu_ssc0000452.1_g000012
rosa_roxburghii	Rroxscaffold_2G00083130 Rroxscaffold_7G00166600
rosa_rugosa	Rorug02G0532800 Rorug02G0532900 Rorug02G0533000 Rorug02G0533000 Rorug02G0630800 Rorug06G0307200 Rorug06G0307300
rosa_samantha	Rh2AG602100 Rh2BG615400 Rh2CG583100 Rh2DG625600 Rh3AG033200 Rh3BG033500 Rh3CG032200 Rh3DG033200 Rh6AG420100 Rh6BG426200 Rh6CG433100 Rh6DG419500
rosa_wichuraiana	Rw0G019830 Rw2G049980 Rw3G002440 Rw6G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	406
AciI	CCGC	1 cut(s)	131
AcoI	YGGCCR	1 cut(s)	89
AcsI	RAATTY	3 cut(s)	95, 345, 381
AcyI	GRCGYC	1 cut(s)	407
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	2 cut(s)	278, 327
AluBI	AGCT	2 cut(s)	140, 178
AluI	AGCT	2 cut(s)	140, 178
Alw26I	GTCTC	1 cut(s)	75
AoxI	GGCC	1 cut(s)	89
ApeKI	GCWGC	1 cut(s)	317
ApoI	RAATTY	3 cut(s)	95, 345, 381
AspLEI	GCGC	1 cut(s)	409
BanI	GGYRCC	1 cut(s)	406
BarI	GAAGNNNNNNTAC	2 cut(s)	345, 377
BbvI	GCAGC	1 cut(s)	304
BclI	TGATCA	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	75
BfaI	CTAG	2 cut(s)	342, 350
BfmI	CTRYAG	2 cut(s)	293, 366
BfoI	RGCGCY	1 cut(s)	410
BisI	GCNGC	1 cut(s)	318
BlsI	GCNGC	1 cut(s)	319
BmiI	GGNNCC	1 cut(s)	408
BmsI	GCATC	2 cut(s)	73, 265
Bpu10I	CCTNAGC	2 cut(s)	234, 243
BsaHI	GRCGYC	1 cut(s)	407
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse3DI	GCAATG	1 cut(s)	312
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMI	GCAATG	1 cut(s)	312
BseXI	GCAGC	1 cut(s)	304
BshFI	GGCC	1 cut(s)	91
BshNI	GGYRCC	1 cut(s)	406
BsiSI	CCGG	2 cut(s)	92, 410
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmAI	GTCTC	1 cut(s)	75
BsnI	GGCC	1 cut(s)	91
Bsp143I	GATC	2 cut(s)	163, 265
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	408
BspMAI	CTGCAG	1 cut(s)	297
BspT107I	GGYRCC	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	312
BssMI	GATC	2 cut(s)	163, 265
BssNI	GRCGYC	1 cut(s)	407
Bst4CI	ACNGT	1 cut(s)	288
BstACI	GRCGYC	1 cut(s)	407
BstC8I	GCNNGC	2 cut(s)	11, 293
BstDEI	CTNAG	3 cut(s)	78, 234, 243
BstENI	CCTNNNNNAGG	1 cut(s)	233
BstH2I	RGCGCY	1 cut(s)	410
BstHHI	GCGC	1 cut(s)	409
BstKTI	GATC	2 cut(s)	166, 268
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	2 cut(s)	163, 265
BstMWI	GCNNNNNNNGC	5 cut(s)	137, 239, 248, 301, 338
BstSFI	CTRYAG	2 cut(s)	293, 366
BstV1I	GCAGC	1 cut(s)	304
BsuRI	GGCC	1 cut(s)	91
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	3 cut(s)	49, 275, 284
Cac8I	GCNNGC	2 cut(s)	11, 293
CfoI	GCGC	1 cut(s)	409
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	2 cut(s)	74, 252
CviJI	RGCY	5 cut(s)	91, 140, 178, 274, 304
CviKI_1	RGCY	5 cut(s)	91, 140, 178, 274, 304
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	3 cut(s)	78, 234, 243
DinI	GGCGCC	1 cut(s)	408
DpnI	GATC	2 cut(s)	165, 267
DpnII	GATC	2 cut(s)	163, 265
EaeI	YGGCCR	1 cut(s)	89
EciI	GGCGGA	1 cut(s)	146
EcoNI	CCTNNNNNAGG	1 cut(s)	233
EcoRI	GAATTC	1 cut(s)	345
EcoT22I	ATGCAT	1 cut(s)	66
EgeI	GGCGCC	1 cut(s)	408
EheI	GGCGCC	1 cut(s)	408
FaeI	CATG	2 cut(s)	77, 255
FaiI	YATR	6 cut(s)	6, 60, 62, 75, 184, 253
FatI	CATG	2 cut(s)	73, 251
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	1 cut(s)	318
Fsp4HI	GCNGC	1 cut(s)	318
FspBI	CTAG	2 cut(s)	342, 350
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	1 cut(s)	318
HaeII	RGCGCY	1 cut(s)	410
HaeIII	GGCC	1 cut(s)	91
HapII	CCGG	2 cut(s)	92, 410
HhaI	GCGC	1 cut(s)	409
Hin1I	GRCGYC	1 cut(s)	407
Hin1II	CATG	2 cut(s)	77, 255
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HpaII	CCGG	2 cut(s)	92, 410
Hpy188I	TCNGA	2 cut(s)	21, 104
Hpy188III	TCNNGA	2 cut(s)	167, 350
HpyAV	CCTTC	1 cut(s)	367
HpyCH4III	ACNGT	1 cut(s)	288
HpyCH4V	TGCA	4 cut(s)	29, 35, 64, 295
HpyF10VI	GCNNNNNNNGC	5 cut(s)	137, 239, 248, 301, 338
HpyF3I	CTNAG	3 cut(s)	78, 234, 243
Hsp92I	GRCGYC	1 cut(s)	407
Hsp92II	CATG	2 cut(s)	77, 255
HspAI	GCGC	1 cut(s)	407
KasI	GGCGCC	1 cut(s)	406
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	163, 265
LpnPI	CCDG	5 cut(s)	105, 237, 305, 306, 423
Lsp1109I	GCAGC	1 cut(s)	304
LweI	GCATC	2 cut(s)	73, 265
MaeI	CTAG	2 cut(s)	342, 350
MalI	GATC	2 cut(s)	165, 267
MboI	GATC	2 cut(s)	163, 265
MfeI	CAATTG	3 cut(s)	24, 153, 327
MluCI	AATT	7 cut(s)	24, 95, 153, 327, 345, 381, 416
Mly113I	GGCGCC	1 cut(s)	407
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	2 cut(s)	24, 239
Mph1103I	ATGCAT	1 cut(s)	66
MseI	TTAA	1 cut(s)	215
MslI	CAYNNNNRTG	1 cut(s)	286
MspI	CCGG	2 cut(s)	92, 410
MunI	CAATTG	3 cut(s)	24, 153, 327
MwoI	GCNNNNNNNGC	5 cut(s)	137, 239, 248, 301, 338
NarI	GGCGCC	1 cut(s)	407
NdeII	GATC	2 cut(s)	163, 265
NlaIII	CATG	2 cut(s)	77, 255
NlaIV	GGNNCC	1 cut(s)	408
NsiI	ATGCAT	1 cut(s)	66
PkrI	GCNGC	1 cut(s)	319
PluTI	GGCGCC	1 cut(s)	410
PspN4I	GGNNCC	1 cut(s)	408
PstI	CTGCAG	1 cut(s)	297
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
RseI	CAYNNNNRTG	1 cut(s)	286
SaqAI	TTAA	1 cut(s)	215
SatI	GCNGC	1 cut(s)	318
Sau3AI	GATC	2 cut(s)	163, 265
SetI	ASST	6 cut(s)	142, 180, 231, 240, 249, 367
SfaNI	GCATC	2 cut(s)	73, 265
SfcI	CTRYAG	2 cut(s)	293, 366
SfoI	GGCGCC	1 cut(s)	408
SmiMI	CAYNNNNRTG	1 cut(s)	286
Sse9I	AATT	7 cut(s)	24, 95, 153, 327, 345, 381, 416
SsiI	CCGC	1 cut(s)	131
SspDI	GGCGCC	1 cut(s)	406
SspMI	CTAG	2 cut(s)	342, 350
TaaI	ACNGT	1 cut(s)	288
TasI	AATT	7 cut(s)	24, 95, 153, 327, 345, 381, 416
TatI	WGTACW	1 cut(s)	297
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TscAI	CASTG	3 cut(s)	56, 275, 291
TseI	GCWGC	1 cut(s)	317
TspRI	CASTG	3 cut(s)	56, 275, 291
XagI	CCTNNNNNAGG	1 cut(s)	233
XapI	RAATTY	3 cut(s)	95, 345, 381
XbaI	TCTAGA	1 cut(s)	349
XspI	CTAG	2 cut(s)	342, 350
Zsp2I	ATGCAT	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.