Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001147

Physical Location & Seq

Genomic Coordinates Reverse (-)

85493598 .. 85497481

Gene Structure 3884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG625600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGATGTTGTGCCACCGATTTTTCATGCGTCAATCTCATGCTAAGAATGATTGGAAGGAAGTCTTCAAGGAATTGATTTTAGTTGCAGAGATACTTCTGTTGTCCACAATTGGTTTTGATTTTGAGATGAAGCTTCCGTACATGTCACTTGTTGAAGCTTTAAGGAGATTAGATCTTTTCTCTGTCCTTGCTGAGAGGGCATGGAATTATGTTAATGATTGCCTTTGCACATCATTGTGCTTGCAGTATGAGCCCAACTACATTGCAGCTGGTTCACTGTTTCTTGCTGCAGAAATAGAAAAAGTCAAACTTCCTAAAGAGGAGGGAAAAGTTTGGTGGGCAGAATTTAATGTTTCGCCGAAACAGTTAGATGATGTCATTCAAGAGATGGTACGTAGTTTGCAGAAGGCAAGCAGAAAACAAGCTCTATCACCCAAAAATGGTGGGAAGGGAAATCAGTCTGAAACTTTAATAAGAAGGCCAAGTGATCCTAGTAGCTCTCAATCATGTGTTTCAAGTGAAGCAGTGGTTGATTGTCATTTTAGGCACAGCACCTTGGTGGAAGAGGACAGAGGACTAGGAGAGTCTATTATGTCTTGCGGCCAAAATGTTGTAGAAGGTGAAAACTGTACCACCACGAAGGAAGCTTTGTCATGTCACACATGTGATAGTGGCAGTCCAAGTGGCAATGTTGAGGATGGTGGTGCTGAGATCAAACCTGTCAGAGGGGAACCAGATGATCAGAACGATAATGCGATTGACATTGACCGGATTAGAGATAAATTGAAGAGGCGGAGATCAGGTGGTAAAGTTTCAAATAAGAAGATGGTGGATGCCACATATGTAGAGGTAGATGCTGAAGCCTGGATAGAAAGTGAGCTTGAAGGTGGTATAGTGCTAGAAGATGCCTCCCCAGAGAAGGAACAAAAGGAGGTCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

313

Amino Acids

35.04

Weight (kDa)

4.99

Isoelectric Point (pI)

66.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630
fragaria_vesca	FvH4_2g39390 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420
malus_domestica	MD04G1049900.v1.1 MD06G1050000.v1.1 MD08G1026200.v1.1
prunus_persica	Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1
pyrus_communis	pycom04g04390 pycom06g04230 pycom06g04240 pycom08g02030
rosa_chinensis	RchiOBHm_Chr2g0168341 RchiOBHm_Chr3g0451061 RchiOBHm_Chr6g0301611
rosa_laevigata	RLG00000011239 RLG00000021768 RLG00000025695
rosa_multiflora	Rmu_co8487951.1_g000001 Rmu_sc0000078.1_g000004 Rmu_sc0016462.1_g000004 Rmu_ssc0000452.1_g000012
rosa_roxburghii	Rroxscaffold_2G00083130 Rroxscaffold_7G00166600
rosa_rugosa	Rorug02G0532800 Rorug02G0532900 Rorug02G0533000 Rorug02G0533000 Rorug02G0630800 Rorug06G0307200 Rorug06G0307300
rosa_samantha	Rh2AG602100 Rh2BG615400 Rh2CG583100 Rh2DG625600 Rh3AG033200 Rh3BG033500 Rh3CG032200 Rh3DG033200 Rh6AG420100 Rh6BG426200 Rh6CG433100 Rh6DG419500
rosa_wichuraiana	Rw0G019830 Rw2G049980 Rw3G002440 Rw6G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	600, 793
AclWI	GGATC	1 cut(s)	482
AcoI	YGGCCR	1 cut(s)	601
AcsI	RAATTY	1 cut(s)	344
AcuI	CTGAAG	1 cut(s)	879
AfaI	GTAC	3 cut(s)	140, 393, 631
AfiI	CCNNNNNNNGG	3 cut(s)	440, 725, 919
AflIII	ACRYGT	2 cut(s)	141, 662
AgsI	TTSAA	7 cut(s)	67, 155, 383, 516, 787, 816, 884
AjnI	CCWGG	1 cut(s)	863
AleI	CACNNNNGTG	2 cut(s)	557, 663
AluBI	AGCT	7 cut(s)	133, 158, 269, 425, 498, 647, 880
AluI	AGCT	7 cut(s)	133, 158, 269, 425, 498, 647, 880
AlwI	GGATC	1 cut(s)	482
AoxI	GGCC	2 cut(s)	479, 601
ApeKI	GCWGC	2 cut(s)	266, 287
ApoI	RAATTY	1 cut(s)	344
AsuHPI	GGTGA	2 cut(s)	423, 632
BaeI	ACNNNNGTAYC	2 cut(s)	83, 116
BanII	GRGCYC	1 cut(s)	255
BarI	GAAGNNNNNNTAC	2 cut(s)	122, 154
BbsI	GAAGAC	1 cut(s)	55
BbvI	GCAGC	2 cut(s)	274, 278
BccI	CCATC	3 cut(s)	382, 692, 820
BciT130I	CCWGG	1 cut(s)	865
BclI	TGATCA	1 cut(s)	739
BfaI	CTAG	3 cut(s)	492, 578, 899
BfmI	CTRYAG	1 cut(s)	288
BglII	AGATCT	1 cut(s)	172
BisI	GCNGC	3 cut(s)	267, 288, 601
BlsI	GCNGC	3 cut(s)	268, 289, 602
Bme1390I	CCNGG	1 cut(s)	865
BmiI	GGNNCC	1 cut(s)	732
BmrFI	CCNGG	1 cut(s)	865
BmsI	GCATC	3 cut(s)	823, 844, 895
BpiI	GAAGAC	1 cut(s)	55
BsaAI	YACGTR	1 cut(s)	395
BsaJI	CCNNGG	1 cut(s)	555
BsaWI	WCCGGW	1 cut(s)	768
BsaXI	ACNNNNNCTCC	3 cut(s)	787, 817, 923
Bsc4I	CCNNNNNNNGG	3 cut(s)	440, 725, 919
Bse3DI	GCAATG	2 cut(s)	261, 694
BseBI	CCWGG	1 cut(s)	865
BseDI	CCNNGG	1 cut(s)	555
BseGI	GGATG	2 cut(s)	703, 838
BseLI	CCNNNNNNNGG	3 cut(s)	440, 725, 919
BseMI	GCAATG	2 cut(s)	261, 694
BseMII	CTCAG	2 cut(s)	183, 699
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	2 cut(s)	274, 278
BshFI	GGCC	2 cut(s)	481, 603
BsiSI	CCGG	1 cut(s)	769
BslI	CCNNNNNNNGG	3 cut(s)	440, 725, 919
BsnI	GGCC	2 cut(s)	481, 603
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	5 cut(s)	172, 487, 711, 739, 797
BspACI	CCGC	2 cut(s)	600, 793
BspANI	GGCC	2 cut(s)	481, 603
BspCNI	CTCAG	2 cut(s)	184, 700
BspLI	GGNNCC	1 cut(s)	732
BspMAI	CTGCAG	1 cut(s)	292
BspPI	GGATC	1 cut(s)	482
BsrDI	GCAATG	2 cut(s)	261, 694
BssECI	CCNNGG	1 cut(s)	555
BssMI	GATC	5 cut(s)	172, 487, 711, 739, 797
BssT1I	CCWWGG	1 cut(s)	555
Bst2UI	CCWGG	1 cut(s)	865
Bst4CI	ACNGT	3 cut(s)	279, 366, 629
Bst6I	CTCTTC	2 cut(s)	558, 782
BstBAI	YACGTR	1 cut(s)	395
BstC8I	GCNNGC	2 cut(s)	242, 412
BstDEI	CTNAG	3 cut(s)	42, 192, 708
BstENI	CCTNNNNNAGG	1 cut(s)	723
BstF5I	GGATG	2 cut(s)	703, 838
BstKTI	GATC	5 cut(s)	175, 490, 714, 742, 800
BstMBI	GATC	5 cut(s)	172, 487, 711, 739, 797
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 250
BstNI	CCWGG	1 cut(s)	865
BstNSI	RCATGY	2 cut(s)	145, 666
BstSCI	CCNGG	1 cut(s)	863
BstSFI	CTRYAG	1 cut(s)	288
BstSNI	TACGTA	1 cut(s)	395
BstV1I	GCAGC	2 cut(s)	274, 278
BstV2I	GAAGAC	1 cut(s)	55
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BsuRI	GGCC	2 cut(s)	481, 603
BtsCI	GGATG	2 cut(s)	703, 838
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	2 cut(s)	275, 531
Cac8I	GCNNGC	2 cut(s)	242, 412
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	3 cut(s)	139, 392, 630
CspCI	CAANNNNNGTGG	2 cut(s)	424, 459
CviAII	CATG	7 cut(s)	25, 38, 142, 201, 507, 654, 663
CviQI	GTAC	3 cut(s)	139, 392, 630
DdeI	CTNAG	3 cut(s)	42, 192, 708
DpnI	GATC	5 cut(s)	174, 489, 713, 741, 799
DpnII	GATC	5 cut(s)	172, 487, 711, 739, 797
EaeI	YGGCCR	1 cut(s)	601
Eam1104I	CTCTTC	2 cut(s)	558, 782
EarI	CTCTTC	2 cut(s)	558, 782
EciI	GGCGGA	1 cut(s)	808
Eco105I	TACGTA	1 cut(s)	395
Eco130I	CCWWGG	1 cut(s)	555
Eco24I	GRGCYC	1 cut(s)	255
Eco57I	CTGAAG	1 cut(s)	879
EcoNI	CCTNNNNNAGG	1 cut(s)	723
EcoRII	CCWGG	1 cut(s)	863
EcoT14I	CCWWGG	1 cut(s)	555
EcoT38I	GRGCYC	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	555
FaeI	CATG	7 cut(s)	28, 41, 145, 204, 510, 657, 666
FalI	AAGNNNNNCTT	5 cut(s)	47, 79, 294, 326, 920
FatI	CATG	7 cut(s)	24, 37, 141, 200, 506, 653, 662
FauNDI	CATATG	1 cut(s)	841
FbaI	TGATCA	1 cut(s)	739
Fnu4HI	GCNGC	3 cut(s)	267, 288, 601
FokI	GGATG	2 cut(s)	710, 845
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	3 cut(s)	267, 288, 601
FspBI	CTAG	3 cut(s)	492, 578, 899
GluI	GCNGC	3 cut(s)	267, 288, 601
HaeIII	GGCC	2 cut(s)	481, 603
HapII	CCGG	1 cut(s)	769
HgaI	GACGC	1 cut(s)	17
Hin1II	CATG	7 cut(s)	28, 41, 145, 204, 510, 657, 666
HindIII	AAGCTT	3 cut(s)	131, 156, 645
HinfI	GANTC	1 cut(s)	584
HpaII	CCGG	1 cut(s)	769
HphI	GGTGA	2 cut(s)	423, 632
Hpy166II	GTNNAC	2 cut(s)	105, 275
Hpy188I	TCNGA	3 cut(s)	463, 725, 744
Hpy188III	TCNNGA	1 cut(s)	383
Hpy8I	GTNNAC	2 cut(s)	105, 275
HpyAV	CCTTC	8 cut(s)	49, 400, 442, 471, 611, 634, 878, 913
HpyCH4III	ACNGT	3 cut(s)	279, 366, 629
HpyCH4IV	ACGT	1 cut(s)	394
HpyCH4V	TGCA	6 cut(s)	86, 228, 244, 266, 290, 403
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 250
HpyF3I	CTNAG	3 cut(s)	42, 192, 708
HpySE526I	ACGT	1 cut(s)	394
Hsp92II	CATG	7 cut(s)	28, 41, 145, 204, 510, 657, 666
Ksp22I	TGATCA	1 cut(s)	739
Kzo9I	GATC	5 cut(s)	172, 487, 711, 739, 797
LpnPI	CCDG	8 cut(s)	255, 732, 747, 782, 786, 850, 877, 927
Lsp1109I	GCAGC	2 cut(s)	274, 278
LweI	GCATC	3 cut(s)	823, 844, 895
MaeI	CTAG	3 cut(s)	492, 578, 899
MaeII	ACGT	1 cut(s)	394
MaeIII	GTNAC	2 cut(s)	144, 656
MalI	GATC	5 cut(s)	174, 489, 713, 741, 799
MboI	GATC	5 cut(s)	172, 487, 711, 739, 797
MboII	GAAGA	5 cut(s)	55, 575, 799, 835, 914
MfeI	CAATTG	1 cut(s)	108
MflI	RGATCY	1 cut(s)	172
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	5 cut(s)	71, 108, 205, 344, 782
MlyI	GAGTC	1 cut(s)	593
MseI	TTAA	4 cut(s)	161, 213, 348, 470
MslI	CAYNNNNRTG	3 cut(s)	235, 557, 663
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	1 cut(s)	769
MspR9I	CCNGG	1 cut(s)	865
MunI	CAATTG	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	865
MwoI	GCNNNNNNNGC	2 cut(s)	197, 250
NdeI	CATATG	1 cut(s)	841
NdeII	GATC	5 cut(s)	172, 487, 711, 739, 797
NlaIII	CATG	7 cut(s)	28, 41, 145, 204, 510, 657, 666
NlaIV	GGNNCC	1 cut(s)	732
NmuCI	GTSAC	2 cut(s)	144, 656
NspI	RCATGY	2 cut(s)	145, 666
OliI	CACNNNNGTG	2 cut(s)	557, 663
PciI	ACATGT	2 cut(s)	141, 662
PkrI	GCNGC	3 cut(s)	268, 289, 602
PleI	GAGTC	1 cut(s)	592
PpsI	GAGTC	1 cut(s)	592
Ppu21I	YACGTR	1 cut(s)	395
PscI	ACATGT	2 cut(s)	141, 662
Psp6I	CCWGG	1 cut(s)	863
PspGI	CCWGG	1 cut(s)	863
PspN4I	GGNNCC	1 cut(s)	732
PstI	CTGCAG	1 cut(s)	292
PsuI	RGATCY	1 cut(s)	172
PvuII	CAGCTG	1 cut(s)	269
RsaI	GTAC	3 cut(s)	140, 393, 631
RsaNI	GTAC	3 cut(s)	139, 392, 630
RseI	CAYNNNNRTG	3 cut(s)	235, 557, 663
SaqAI	TTAA	4 cut(s)	161, 213, 348, 470
SatI	GCNGC	3 cut(s)	267, 288, 601
Sau3AI	GATC	5 cut(s)	172, 487, 711, 739, 797
SchI	GAGTC	1 cut(s)	593
ScrFI	CCNGG	1 cut(s)	865
SduI	GDGCHC	1 cut(s)	255
SfaNI	GCATC	3 cut(s)	823, 844, 895
SfcI	CTRYAG	1 cut(s)	288
SmiMI	CAYNNNNRTG	3 cut(s)	235, 557, 663
SnaBI	TACGTA	1 cut(s)	395
Sse9I	AATT	5 cut(s)	71, 108, 205, 344, 782
SsiI	CCGC	2 cut(s)	600, 793
SspMI	CTAG	3 cut(s)	492, 578, 899
StyD4I	CCNGG	1 cut(s)	863
StyI	CCWWGG	1 cut(s)	555
TaaI	ACNGT	3 cut(s)	279, 366, 629
TaiI	ACGT	1 cut(s)	397
TasI	AATT	5 cut(s)	71, 108, 205, 344, 782
TauI	GCSGC	1 cut(s)	603
Tru1I	TTAA	4 cut(s)	161, 213, 348, 470
Tru9I	TTAA	4 cut(s)	161, 213, 348, 470
TscAI	CASTG	2 cut(s)	282, 531
TseFI	GTSAC	2 cut(s)	144, 656
TseI	GCWGC	2 cut(s)	266, 287
Tsp45I	GTSAC	2 cut(s)	144, 656
TspDTI	ATGAA	2 cut(s)	13, 143
TspGWI	ACGGA	1 cut(s)	126
TspRI	CASTG	2 cut(s)	282, 531
XagI	CCTNNNNNAGG	1 cut(s)	723
XapI	RAATTY	1 cut(s)	344
XceI	RCATGY	2 cut(s)	145, 666
XspI	CTAG	3 cut(s)	492, 578, 899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.