RchiOBHm_Chr6g0301611

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
61961906 .. 61965334
3429 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27090

Sequence Viewer

Length: 1326 bp
ATGGCGAGGCCGGTGCCTGAGAATCCTTCTGAGCAGGGAATTGCAAAAGCTTCGACAAGCATGTGCATTCCACAGGAGGCTCAGTGTCCTGTCAGAAAGTGGTATTTTACAAAACAGGAAATTGAAGACTCTCCATCCCGGAGGGATGGCATTAGCACGAAGAAAGAGTCGCACTTGCGGAGTTTATACTGCTCGTTTCTTCAGGAGATTGGGATGAAGCTTAAAGTGCCTCAGCTGACAATATCATCTGCAATGATGTTGTGCCACCAGTTTTATATGCGTCAATCTCACGCTAAGAATGGTTGGCAGACGGTGGCAACTGCGAGCATCTTTCTCGCATGCAAAGCAGAAGATACACCACGCTATCTGAATGATGTTGTTGTGGTGGCATATGAGATGGTGCACAAATTTGATTCATCTGCCTTGCACCGAATCAGACAAAAAGAATTTCTCAATAAGCAAAAGGAATTGATCCTAGTTGCGGAGAGACTTCTGCTGTCAACAATTGGCTTTGATCTGGACATTCAGCTTCCATACAAGATACTTGTTGCTGCTCTAAAGAGATTAGATCTTCTCCCTGACCTTGCTAAGGCGGCATGGAGTTTTGTGAACGATTGGCTTCGCACATCATTGTGCTTGCAGTACAAGCCCCATTACATTGCAGCTGGTTCGGTCGCTCTTGCTGCTAATTTTCAAAAGGTGAAACTACCTAAAGAGAAGGGAAAAGTTTGGTGGCTGGAGTTTGATGTTACACCGAAACAGTTAGATGAGGTCATTCAGCGGATGCATAGTATGTTCAAGCCTCTACCAGCTAAAACTGGGAAGGCCGTTCAACCTGAAATTTTATCCAGAAAGCCAATTGATAGTAGCCCTCAATCATGTATTTCAAGTGAAGCAATGGTAGACCAGCATTCTAGGCATGGTGCCACTGTGGATGATAGAGGATTAGGAGGAGAGTCTGTTATGTCTACATGTAGGCAAAATCTTGGAGGTGAGAACAATCTTACTGGGAAGGATGCTTTACCATGCCAGACGAATAATAGGAGTATTGTCAAGGATAGTGGTGGTGAGATCAAGCCAATAAGAGGGGAATTGGACGATCAGAGCACAAGATGCAAGATTCTTGATGTTCCTAAAAGCTGTGGTAAGATCGATATTAACCGTATTCGAGAATTGAAGAGGAGAAGATGTGATAAAGGTGTAAATAAGAAGTTGGCGGGCTCCATTACTGATGAGTTAGATCCTGAAGCCTGGATAGAAAGTGAGCTTGAAAACGGAGTAGAGCTGGAAGATGCATCTGCAGCAAAGAAACAAAGGAAGGCTTAG

Protein Analysis

441

Amino Acids

49.58

Weight (kDa)

8.98

Isoelectric Point (pI)

55.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 34 - 173 1.8e-15 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 13, 923
AccI GTMKAC 2 cut(s) 903, 968
AciI CCGC 5 cut(s) 178, 482, 593, 781, 1217
AclWI GGATC 2 cut(s) 466, 1235
AcsI RAATTY 3 cut(s) 407, 446, 840
AcuI CTGAAG 2 cut(s) 185, 1266
AfaI GTAC 1 cut(s) 644
AfiI CCNNNNNNNGG 3 cut(s) 481, 589, 1085
AflIII ACRYGT 1 cut(s) 971
AgsI TTSAA 7 cut(s) 125, 695, 799, 833, 888, 1177, 1271
AjnI CCWGG 1 cut(s) 1250
AluBI AGCT 9 cut(s) 50, 220, 235, 529, 665, 812, 1140, 1267, 1285
AluI AGCT 9 cut(s) 50, 220, 235, 529, 665, 812, 1140, 1267, 1285
Alw21I GWGCWC 2 cut(s) 405, 1109
Alw26I GTCTC 1 cut(s) 481
Alw44I GTGCAC 1 cut(s) 401
AlwI GGATC 2 cut(s) 466, 1235
AoxI GGCC 2 cut(s) 8, 825
ApaLI GTGCAC 1 cut(s) 401
ApeKI GCWGC 4 cut(s) 551, 662, 683, 1301
ApoI RAATTY 3 cut(s) 407, 446, 840
ArsI GACNNNNNNTTYG 2 cut(s) 152, 184
AsuC2I CCSGG 1 cut(s) 139
AsuHPI GGTGA 3 cut(s) 712, 1004, 1079
BaeGI GKGCMC 1 cut(s) 405
BanI GGYRCC 2 cut(s) 13, 923
BanII GRGCYC 1 cut(s) 1223
BbsI GAAGAC 1 cut(s) 132
Bbv12I GWGCWC 2 cut(s) 405, 1109
BbvCI CCTCAGC 1 cut(s) 231
BbvI GCAGC 4 cut(s) 538, 670, 674, 1313
BccI CCATC 3 cut(s) 140, 142, 391
BceAI ACGGC 1 cut(s) 812
BcgI CGANNNNNNTGC 7 cut(s) 29, 33, 67, 316, 350, 651, 685
BciT130I CCWGG 1 cut(s) 1252
BcnI CCSGG 1 cut(s) 139
BcoDI GTCTC 1 cut(s) 481
BfaI CTAG 2 cut(s) 476, 915
BfmI CTRYAG 1 cut(s) 1299
BglII AGATCT 1 cut(s) 568
BisI GCNGC 5 cut(s) 552, 594, 663, 684, 1302
BlsI GCNGC 5 cut(s) 553, 595, 664, 685, 1303
Bme1390I CCNGG 2 cut(s) 139, 1252
BmiI GGNNCC 3 cut(s) 15, 925, 1222
BmrFI CCNGG 2 cut(s) 139, 1252
BmrI ACTGGG 2 cut(s) 828, 1017
BmsI GCATC 6 cut(s) 336, 774, 1006, 1103, 1282, 1304
BmuI ACTGGG 2 cut(s) 828, 1017
BpiI GAAGAC 1 cut(s) 132
BpmI CTGGAG 1 cut(s) 758
Bpu10I CCTNAGC 2 cut(s) 231, 588
BpuMI CCSGG 1 cut(s) 139
Bsa29I ATCGAT 1 cut(s) 1152
BsaXI ACNNNNNCTCC 6 cut(s) 68, 98, 945, 975, 1174, 1204
Bsc4I CCNNNNNNNGG 3 cut(s) 481, 589, 1085
Bse118I RCCGGY 1 cut(s) 10
Bse1I ACTGG 3 cut(s) 268, 823, 1012
Bse3DI GCAATG 3 cut(s) 258, 657, 903
BseBI CCWGG 1 cut(s) 1252
BseCI ATCGAT 1 cut(s) 1152
BseGI GGATG 6 cut(s) 134, 151, 219, 789, 940, 1021
BseLI CCNNNNNNNGG 3 cut(s) 481, 589, 1085
BseMI GCAATG 3 cut(s) 258, 657, 903
BseMII CTCAG 4 cut(s) 9, 21, 95, 245
BseNI ACTGG 3 cut(s) 268, 823, 1012
BseRI GAGGAG 2 cut(s) 966, 1195
BseSI GKGCMC 1 cut(s) 405
BseXI GCAGC 4 cut(s) 538, 670, 674, 1313
Bsh1285I CGRYCG 1 cut(s) 675
BshFI GGCC 2 cut(s) 10, 827
BshNI GGYRCC 2 cut(s) 13, 923
BshVI ATCGAT 1 cut(s) 1152
BsiEI CGRYCG 1 cut(s) 675
BsiHKAI GWGCWC 2 cut(s) 405, 1109
BsiSI CCGG 2 cut(s) 11, 139
BslI CCNNNNNNNGG 3 cut(s) 481, 589, 1085
BsmAI GTCTC 1 cut(s) 481
BsmI GAATGC 2 cut(s) 66, 910
BsnI GGCC 2 cut(s) 10, 827
Bsp1286I GDGCHC 3 cut(s) 405, 1109, 1223
Bsp143I GATC 7 cut(s) 471, 514, 568, 1071, 1099, 1149, 1240
BspACI CCGC 5 cut(s) 178, 482, 593, 781, 1217
BspANI GGCC 2 cut(s) 10, 827
BspCNI CTCAG 4 cut(s) 10, 22, 94, 244
BspDI ATCGAT 1 cut(s) 1152
BspLI GGNNCC 3 cut(s) 15, 925, 1222
BspMAI CTGCAG 1 cut(s) 1303
BspPI GGATC 2 cut(s) 466, 1235
BspT107I GGYRCC 2 cut(s) 13, 923
BsrDI GCAATG 3 cut(s) 258, 657, 903
BsrFI RCCGGY 1 cut(s) 10
BsrI ACTGG 3 cut(s) 268, 823, 1012
BssAI RCCGGY 1 cut(s) 10
BssMI GATC 7 cut(s) 471, 514, 568, 1071, 1099, 1149, 1240
Bst2UI CCWGG 1 cut(s) 1252
Bst4CI ACNGT 4 cut(s) 313, 762, 931, 1163
Bst6I CTCTTC 1 cut(s) 1172
BstAPI GCANNNNNTGC 1 cut(s) 1113
BstC8I GCNNGC 4 cut(s) 325, 340, 638, 1219
BstDEI CTNAG 7 cut(s) 18, 30, 81, 231, 294, 588, 1323
BstENI CCTNNNNNAGG 1 cut(s) 587
BstF5I GGATG 6 cut(s) 134, 151, 219, 789, 940, 1021
BstKTI GATC 7 cut(s) 474, 517, 571, 1074, 1102, 1152, 1243
BstMAI GTCTC 1 cut(s) 481
BstMBI GATC 7 cut(s) 471, 514, 568, 1071, 1099, 1149, 1240
BstMCI CGRYCG 1 cut(s) 675
BstMWI GCNNNNNNNGC 8 cut(s) 226, 344, 593, 646, 683, 916, 1113, 1301
BstNI CCWGG 1 cut(s) 1252
BstNSI RCATGY 3 cut(s) 64, 342, 975
BstSCI CCNGG 2 cut(s) 137, 1250
BstSFI CTRYAG 1 cut(s) 1299
BstSLI GKGCMC 1 cut(s) 405
BstV1I GCAGC 4 cut(s) 538, 670, 674, 1313
BstV2I GAAGAC 1 cut(s) 132
BstX2I RGATCY 2 cut(s) 568, 1240
BstYI RGATCY 2 cut(s) 568, 1240
Bsu15I ATCGAT 1 cut(s) 1152
BsuRI GGCC 2 cut(s) 10, 827
BsuTUI ATCGAT 1 cut(s) 1152
BtsCI GGATG 6 cut(s) 134, 151, 219, 789, 940, 1021
BtsIMutI CAGTG 2 cut(s) 89, 927
Cac8I GCNNGC 4 cut(s) 325, 340, 638, 1219
Cfr10I RCCGGY 1 cut(s) 10
ClaI ATCGAT 1 cut(s) 1152
CseI GACGC 1 cut(s) 269
Csp6I GTAC 1 cut(s) 643
CspCI CAANNNNNGTGG 2 cut(s) 1042, 1077
CviAII CATG 7 cut(s) 61, 339, 597, 879, 920, 972, 1026
CviQI GTAC 1 cut(s) 643
DdeI CTNAG 7 cut(s) 18, 30, 81, 231, 294, 588, 1323
DpnI GATC 7 cut(s) 473, 516, 570, 1073, 1101, 1151, 1242
DpnII GATC 7 cut(s) 471, 514, 568, 1071, 1099, 1149, 1240
Eam1104I CTCTTC 1 cut(s) 1172
EarI CTCTTC 1 cut(s) 1172
Eco24I GRGCYC 1 cut(s) 1223
Eco57I CTGAAG 2 cut(s) 185, 1266
EcoNI CCTNNNNNAGG 1 cut(s) 587
EcoRII CCWGG 1 cut(s) 1250
EcoT22I ATGCAT 2 cut(s) 789, 1297
EcoT38I GRGCYC 1 cut(s) 1223
FaeI CATG 7 cut(s) 64, 342, 600, 882, 923, 975, 1029
FalI AAGNNNNNCTT 1 cut(s) 1306
FatI CATG 7 cut(s) 60, 338, 596, 878, 919, 971, 1025
FauI CCCGC 1 cut(s) 1210
FauNDI CATATG 1 cut(s) 391
FblI GTMKAC 2 cut(s) 903, 968
Fnu4HI GCNGC 5 cut(s) 552, 594, 663, 684, 1302
FokI GGATG 6 cut(s) 121, 158, 226, 796, 947, 1028
FriOI GRGCYC 1 cut(s) 1223
Fsp4HI GCNGC 5 cut(s) 552, 594, 663, 684, 1302
FspBI CTAG 2 cut(s) 476, 915
GluI GCNGC 5 cut(s) 552, 594, 663, 684, 1302
GsuI CTGGAG 1 cut(s) 758
HaeIII GGCC 2 cut(s) 10, 827
HapII CCGG 2 cut(s) 11, 139
HgaI GACGC 1 cut(s) 269
Hin1II CATG 7 cut(s) 64, 342, 600, 882, 923, 975, 1029
HincII GTYRAC 1 cut(s) 501
HindII GTYRAC 1 cut(s) 501
HindIII AAGCTT 2 cut(s) 48, 218
HinfI GANTC 7 cut(s) 22, 128, 167, 413, 432, 956, 1120
HpaII CCGG 2 cut(s) 11, 139
HphI GGTGA 3 cut(s) 712, 1004, 1079
Hpy166II GTNNAC 5 cut(s) 403, 501, 610, 904, 969
Hpy188I TCNGA 5 cut(s) 31, 95, 369, 437, 1104
Hpy188III TCNNGA 6 cut(s) 203, 518, 849, 1124, 1169, 1244
Hpy8I GTNNAC 5 cut(s) 403, 501, 610, 904, 969
HpyAV CCTTC 5 cut(s) 36, 712, 817, 1006, 1312
HpyCH4III ACNGT 4 cut(s) 313, 762, 931, 1163
HpyF10VI GCNNNNNNNGC 8 cut(s) 226, 344, 593, 646, 683, 916, 1113, 1301
HpyF3I CTNAG 7 cut(s) 18, 30, 81, 231, 294, 588, 1323
Hsp92II CATG 7 cut(s) 64, 342, 600, 882, 923, 975, 1029
Kzo9I GATC 7 cut(s) 471, 514, 568, 1071, 1099, 1149, 1240
LmnI GCTCC 1 cut(s) 1226
Lsp1109I GCAGC 4 cut(s) 538, 670, 674, 1313
LweI GCATC 6 cut(s) 336, 774, 1006, 1103, 1282, 1304
MaeI CTAG 2 cut(s) 476, 915
MaeIII GTNAC 1 cut(s) 748
MalI GATC 7 cut(s) 473, 516, 570, 1073, 1101, 1151, 1242
MboI GATC 7 cut(s) 471, 514, 568, 1071, 1099, 1149, 1240
MboII GAAGA 8 cut(s) 137, 172, 191, 362, 563, 1189, 1197, 1301
MfeI CAATTG 2 cut(s) 504, 858
MflI RGATCY 2 cut(s) 568, 1240
MhlI GDGCHC 3 cut(s) 405, 1109, 1223
MlyI GAGTC 3 cut(s) 122, 176, 965
Mph1103I ATGCAT 2 cut(s) 789, 1297
MseI TTAA 2 cut(s) 222, 1158
MslI CAYNNNNRTG 1 cut(s) 631
MspA1I CMGCKG 3 cut(s) 235, 665, 781
MspI CCGG 2 cut(s) 11, 139
MspR9I CCNGG 2 cut(s) 139, 1252
MunI CAATTG 2 cut(s) 504, 858
Mva1269I GAATGC 2 cut(s) 66, 910
MvaI CCWGG 1 cut(s) 1252
MwoI GCNNNNNNNGC 8 cut(s) 226, 344, 593, 646, 683, 916, 1113, 1301
NciI CCSGG 1 cut(s) 139
NdeI CATATG 1 cut(s) 391
NdeII GATC 7 cut(s) 471, 514, 568, 1071, 1099, 1149, 1240
NlaIII CATG 7 cut(s) 64, 342, 600, 882, 923, 975, 1029
NlaIV GGNNCC 3 cut(s) 15, 925, 1222
NsiI ATGCAT 2 cut(s) 789, 1297
NspI RCATGY 3 cut(s) 64, 342, 975
PaeI GCATGC 1 cut(s) 342
PciI ACATGT 1 cut(s) 971
PctI GAATGC 2 cut(s) 66, 910
PfeI GAWTC 4 cut(s) 22, 413, 432, 1120
PfoI TCCNGGA 1 cut(s) 137
PkrI GCNGC 5 cut(s) 553, 595, 664, 685, 1303
PleI GAGTC 3 cut(s) 122, 175, 964
PpsI GAGTC 3 cut(s) 122, 175, 964
PscI ACATGT 1 cut(s) 971
Psp6I CCWGG 1 cut(s) 1250
PspGI CCWGG 1 cut(s) 1250
PspN4I GGNNCC 3 cut(s) 15, 925, 1222
PstI CTGCAG 1 cut(s) 1303
PsuI RGATCY 2 cut(s) 568, 1240
PvuII CAGCTG 2 cut(s) 235, 665
RsaI GTAC 1 cut(s) 644
RsaNI GTAC 1 cut(s) 643
RseI CAYNNNNRTG 1 cut(s) 631
SaqAI TTAA 2 cut(s) 222, 1158
SatI GCNGC 5 cut(s) 552, 594, 663, 684, 1302
Sau3AI GATC 7 cut(s) 471, 514, 568, 1071, 1099, 1149, 1240
SchI GAGTC 3 cut(s) 122, 176, 965
ScrFI CCNGG 2 cut(s) 139, 1252
SduI GDGCHC 3 cut(s) 405, 1109, 1223
SfaNI GCATC 6 cut(s) 336, 774, 1006, 1103, 1282, 1304
SfcI CTRYAG 1 cut(s) 1299
SmiMI CAYNNNNRTG 1 cut(s) 631
SphI GCATGC 1 cut(s) 342
SsiI CCGC 5 cut(s) 178, 482, 593, 781, 1217
SspMI CTAG 2 cut(s) 476, 915
StyD4I CCNGG 2 cut(s) 137, 1250
TaaI ACNGT 4 cut(s) 313, 762, 931, 1163
TaqI TCGA 3 cut(s) 53, 1152, 1168
TaqII GACCGA 1 cut(s) 661
TatI WGTACW 1 cut(s) 642
TauI GCSGC 1 cut(s) 596
TfiI GAWTC 4 cut(s) 22, 413, 432, 1120
Tru1I TTAA 2 cut(s) 222, 1158
Tru9I TTAA 2 cut(s) 222, 1158
TscAI CASTG 2 cut(s) 89, 934
TseI GCWGC 4 cut(s) 551, 662, 683, 1301
TspDTI ATGAA 2 cut(s) 230, 405
TspGWI ACGGA 1 cut(s) 1290
TspRI CASTG 2 cut(s) 89, 934
VneI GTGCAC 1 cut(s) 401
XagI CCTNNNNNAGG 1 cut(s) 587
XapI RAATTY 3 cut(s) 407, 446, 840
XceI RCATGY 3 cut(s) 64, 342, 975
XmiI GTMKAC 2 cut(s) 903, 968
XspI CTAG 2 cut(s) 476, 915
Zsp2I ATGCAT 2 cut(s) 789, 1297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.