Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001147

Physical Location & Seq

Genomic Coordinates Forward (+)

6821385 .. 6822187

Gene Structure 803 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1050000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGGTGCCATTGGAAAGTGGTATTTCACAAAAGAGGAGATAGAAACAGAAACCCCATCTCAGATGCATGGGATTAGCCGGATGAAAGAGTCGGAATTGCGGAGATACCGCTTGTTTCTGAGGGAGCTGGGGACAAAATTGAAAGTGGGTAGGGTTACCATTTCGACCGCGATGATGCTGTGCCACCAATTTTACATGCGGCAATCTCATGGAAAGAACGATTGGAAGATTGTTGCAACTTCAAGCATGCTTCTTGCTTGCAAGTTAGTCAAAGAAGTCAGGGAATTGATCTTGCTTGGGGAGAGACTTGTGTTGCAAACAATCGGTTTTGAATTTGATCGAATCAAACATCCATATGATCCACTTGCTTCGGCTCTAAGGAGATTGAATTGTAGTAGCTATGGAGGCCTTGGTATGTTGGCTATAAGTTTGATTAAGGAGTGCCTTCAAACCATATTGTGCTTGGAGTTCAAACCCCAGTGCATTGCAGCTGGTTCAGTGGCTATTGCGGCTGAATTTCTCAAAGTACCGACACCATCTACCGGACTACTACAGATGAATGGGAAATTTTGGTGGCATGAAACTTCGTCTAGAAACCCAAGTGCAAGTTGTAGTAGCTCTCAGTCATGTGTTTCAATTAAAGAAACAGTTGATTTGCAACCTACAAAGAAACAAAGAACGTCGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

230

Amino Acids

25.84

Weight (kDa)

9.39

Isoelectric Point (pI)

54.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	8 - 89	3.9e-09	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630
fragaria_vesca	FvH4_2g39390 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420
malus_domestica	MD04G1049900.v1.1 MD06G1050000.v1.1 MD08G1026200.v1.1
prunus_persica	Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1
pyrus_communis	pycom04g04390 pycom06g04230 pycom06g04240 pycom08g02030
rosa_chinensis	RchiOBHm_Chr2g0168341 RchiOBHm_Chr3g0451061 RchiOBHm_Chr6g0301611
rosa_laevigata	RLG00000011239 RLG00000021768 RLG00000025695
rosa_multiflora	Rmu_co8487951.1_g000001 Rmu_sc0000078.1_g000004 Rmu_sc0016462.1_g000004 Rmu_ssc0000452.1_g000012
rosa_roxburghii	Rroxscaffold_2G00083130 Rroxscaffold_7G00166600
rosa_rugosa	Rorug02G0532800 Rorug02G0532900 Rorug02G0533000 Rorug02G0533000 Rorug02G0630800 Rorug06G0307200 Rorug06G0307300
rosa_samantha	Rh2AG602100 Rh2BG615400 Rh2CG583100 Rh2DG625600 Rh3AG033200 Rh3BG033500 Rh3CG032200 Rh3DG033200 Rh6AG420100 Rh6BG426200 Rh6CG433100 Rh6DG419500
rosa_wichuraiana	Rw0G019830 Rw2G049980 Rw3G002440 Rw6G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	5
AccII	CGCG	1 cut(s)	170
AciI	CCGC	5 cut(s)	100, 109, 168, 199, 509
AclWI	GGATC	1 cut(s)	353
AcsI	RAATTY	3 cut(s)	332, 515, 566
AfaI	GTAC	1 cut(s)	528
AfiI	CCNNNNNNNGG	1 cut(s)	542
AgsI	TTSAA	7 cut(s)	142, 243, 332, 388, 449, 472, 636
AjuI	GAANNNNNNNTTGG	2 cut(s)	205, 237
AluBI	AGCT	4 cut(s)	127, 399, 491, 618
AluI	AGCT	4 cut(s)	127, 399, 491, 618
Alw26I	GTCTC	1 cut(s)	298
AlwI	GGATC	1 cut(s)	353
AoxI	GGCC	1 cut(s)	406
ApeKI	GCWGC	1 cut(s)	488
ApoI	RAATTY	3 cut(s)	332, 515, 566
BanI	GGYRCC	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	500
BccI	CCATC	2 cut(s)	64, 544
BcoDI	GTCTC	1 cut(s)	298
BfaI	CTAG	1 cut(s)	591
BfmI	CTRYAG	1 cut(s)	551
BisI	GCNGC	3 cut(s)	200, 489, 510
BlsI	GCNGC	3 cut(s)	201, 490, 511
BmiI	GGNNCC	1 cut(s)	7
BmrI	ACTGGG	1 cut(s)	472
BmsI	GCATC	2 cut(s)	54, 165
BmuI	ACTGGG	1 cut(s)	472
BsaJI	CCNNGG	1 cut(s)	409
BsaWI	WCCGGW	1 cut(s)	542
Bsc4I	CCNNNNNNNGG	1 cut(s)	542
Bse1I	ACTGG	1 cut(s)	478
Bse3DI	GCAATG	1 cut(s)	483
BseDI	CCNNGG	1 cut(s)	409
BseGI	GGATG	2 cut(s)	87, 349
BseLI	CCNNNNNNNGG	1 cut(s)	542
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	3 cut(s)	74, 110, 635
BseNI	ACTGG	1 cut(s)	478
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	500
BseYI	CCCAGC	1 cut(s)	127
Bsh1236I	CGCG	1 cut(s)	170
Bsh1285I	CGRYCG	1 cut(s)	168
BshFI	GGCC	1 cut(s)	408
BshNI	GGYRCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	168
BsiSI	CCGG	2 cut(s)	79, 543
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	542
BsmAI	GTCTC	1 cut(s)	298
BsmFI	GGGAC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	408
Bsp143I	GATC	3 cut(s)	288, 337, 358
BspACI	CCGC	5 cut(s)	100, 109, 168, 199, 509
BspANI	GGCC	1 cut(s)	408
BspCNI	CTCAG	3 cut(s)	73, 111, 634
BspFNI	CGCG	1 cut(s)	170
BspLI	GGNNCC	1 cut(s)	7
BspPI	GGATC	1 cut(s)	353
BspT107I	GGYRCC	1 cut(s)	5
BsrDI	GCAATG	1 cut(s)	483
BsrI	ACTGG	1 cut(s)	478
BssECI	CCNNGG	1 cut(s)	409
BssMI	GATC	3 cut(s)	288, 337, 358
BssT1I	CCWWGG	1 cut(s)	409
Bst4CI	ACNGT	1 cut(s)	649
BstC8I	GCNNGC	2 cut(s)	248, 259
BstDEI	CTNAG	4 cut(s)	60, 119, 377, 621
BstEII	GGTNACC	1 cut(s)	154
BstF5I	GGATG	2 cut(s)	87, 349
BstFNI	CGCG	1 cut(s)	170
BstKTI	GATC	3 cut(s)	291, 340, 361
BstMAI	GTCTC	1 cut(s)	298
BstMBI	GATC	3 cut(s)	288, 337, 358
BstMCI	CGRYCG	1 cut(s)	168
BstMWI	GCNNNNNNNGC	2 cut(s)	405, 509
BstNSI	RCATGY	2 cut(s)	199, 250
BstPI	GGTNACC	1 cut(s)	154
BstSFI	CTRYAG	1 cut(s)	551
BstUI	CGCG	1 cut(s)	170
BstV1I	GCAGC	1 cut(s)	500
BsuRI	GGCC	1 cut(s)	408
BtgZI	GCGATG	1 cut(s)	185
BtsCI	GGATG	2 cut(s)	87, 349
BtsIMutI	CAGTG	2 cut(s)	485, 504
Cac8I	GCNNGC	2 cut(s)	248, 259
Csp6I	GTAC	1 cut(s)	527
CviAII	CATG	6 cut(s)	68, 196, 209, 247, 578, 627
CviQI	GTAC	1 cut(s)	527
DdeI	CTNAG	4 cut(s)	60, 119, 377, 621
DpnI	GATC	3 cut(s)	290, 339, 360
DpnII	GATC	3 cut(s)	288, 337, 358
Eco130I	CCWWGG	1 cut(s)	409
Eco147I	AGGCCT	1 cut(s)	408
Eco91I	GGTNACC	1 cut(s)	154
EcoO65I	GGTNACC	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	409
EcoT22I	ATGCAT	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	6 cut(s)	71, 199, 212, 250, 581, 630
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	6 cut(s)	67, 195, 208, 246, 577, 626
FauNDI	CATATG	1 cut(s)	355
Fnu4HI	GCNGC	3 cut(s)	200, 489, 510
FokI	GGATG	2 cut(s)	94, 336
Fsp4HI	GCNGC	3 cut(s)	200, 489, 510
FspBI	CTAG	1 cut(s)	591
GluI	GCNGC	3 cut(s)	200, 489, 510
GsaI	CCCAGC	1 cut(s)	131
HaeIII	GGCC	1 cut(s)	408
HapII	CCGG	2 cut(s)	79, 543
Hin1II	CATG	6 cut(s)	71, 199, 212, 250, 581, 630
HinfI	GANTC	2 cut(s)	89, 342
HpaII	CCGG	2 cut(s)	79, 543
Hpy188I	TCNGA	3 cut(s)	63, 94, 120
Hpy188III	TCNNGA	1 cut(s)	591
Hpy99I	CGWCG	1 cut(s)	685
HpyAV	CCTTC	1 cut(s)	455
HpyCH4III	ACNGT	1 cut(s)	649
HpyCH4IV	ACGT	1 cut(s)	680
HpyCH4V	TGCA	8 cut(s)	67, 236, 261, 316, 483, 488, 605, 658
HpyF10VI	GCNNNNNNNGC	2 cut(s)	405, 509
HpyF3I	CTNAG	4 cut(s)	60, 119, 377, 621
HpySE526I	ACGT	1 cut(s)	680
Hsp92II	CATG	6 cut(s)	71, 199, 212, 250, 581, 630
Kzo9I	GATC	3 cut(s)	288, 337, 358
LmnI	GCTCC	1 cut(s)	124
LpnPI	CCDG	6 cut(s)	92, 113, 265, 477, 491, 556
Lsp1109I	GCAGC	1 cut(s)	500
LweI	GCATC	2 cut(s)	54, 165
MaeI	CTAG	1 cut(s)	591
MaeII	ACGT	1 cut(s)	680
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	3 cut(s)	290, 339, 360
MboI	GATC	3 cut(s)	288, 337, 358
MboII	GAAGA	1 cut(s)	238
MluCI	AATT	9 cut(s)	95, 137, 188, 284, 332, 388, 515, 566, 636
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	3 cut(s)	28, 114, 398
Mph1103I	ATGCAT	1 cut(s)	69
MseI	TTAA	2 cut(s)	435, 639
MslI	CAYNNNNRTG	1 cut(s)	354
MspA1I	CMGCKG	1 cut(s)	491
MspI	CCGG	2 cut(s)	79, 543
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	2 cut(s)	405, 509
NdeI	CATATG	1 cut(s)	355
NdeII	GATC	3 cut(s)	288, 337, 358
NlaIII	CATG	6 cut(s)	71, 199, 212, 250, 581, 630
NlaIV	GGNNCC	1 cut(s)	7
NsiI	ATGCAT	1 cut(s)	69
NspI	RCATGY	2 cut(s)	199, 250
PaeI	GCATGC	1 cut(s)	250
PceI	AGGCCT	1 cut(s)	408
PfeI	GAWTC	1 cut(s)	342
PkrI	GCNGC	3 cut(s)	201, 490, 511
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PspEI	GGTNACC	1 cut(s)	154
PspFI	CCCAGC	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	7
PvuII	CAGCTG	1 cut(s)	491
RsaI	GTAC	1 cut(s)	528
RsaNI	GTAC	1 cut(s)	527
RseI	CAYNNNNRTG	1 cut(s)	354
SaqAI	TTAA	2 cut(s)	435, 639
SatI	GCNGC	3 cut(s)	200, 489, 510
Sau3AI	GATC	3 cut(s)	288, 337, 358
SchI	GAGTC	1 cut(s)	98
SetI	ASST	6 cut(s)	129, 401, 493, 620, 664, 683
SfaNI	GCATC	2 cut(s)	54, 165
SfcI	CTRYAG	1 cut(s)	551
SmiMI	CAYNNNNRTG	1 cut(s)	354
SphI	GCATGC	1 cut(s)	250
Sse9I	AATT	9 cut(s)	95, 137, 188, 284, 332, 388, 515, 566, 636
SseBI	AGGCCT	1 cut(s)	408
SsiI	CCGC	5 cut(s)	100, 109, 168, 199, 509
SspMI	CTAG	1 cut(s)	591
StuI	AGGCCT	1 cut(s)	408
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	1 cut(s)	649
TaiI	ACGT	1 cut(s)	683
TaqI	TCGA	2 cut(s)	164, 340
TasI	AATT	9 cut(s)	95, 137, 188, 284, 332, 388, 515, 566, 636
TauI	GCSGC	2 cut(s)	202, 512
TfiI	GAWTC	1 cut(s)	342
Tru1I	TTAA	2 cut(s)	435, 639
Tru9I	TTAA	2 cut(s)	435, 639
TscAI	CASTG	2 cut(s)	485, 504
TseI	GCWGC	1 cut(s)	488
TspDTI	ATGAA	3 cut(s)	98, 572, 594
TspRI	CASTG	2 cut(s)	485, 504
XapI	RAATTY	3 cut(s)	332, 515, 566
XbaI	TCTAGA	1 cut(s)	590
XceI	RCATGY	2 cut(s)	199, 250
XcmI	CCANNNNNNNNNTGG	1 cut(s)	460
XspI	CTAG	1 cut(s)	591
Zsp2I	ATGCAT	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.