Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001147

Physical Location & Seq

Genomic Coordinates Forward (+)

2231674 .. 2234114

Gene Structure 2441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG033200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGTATGGCGTGTTTTGGCTCATTGACTGCAATAGCATGGCTATCTATTCTCTGCTGCCTCATCTGACAATTGCAACTGCAAAGATGTTGTGCCACCGCTTTTATATGCATCAGTCTCATGCTAAGAATGATTGGCAGACTATTGCAACTGCTTGCATCCTTGTCGCCTGCAAAGTGGACGACACACCACACTTTCTGAGTGATGTTGCTTTTGAATTTTTCAGAAAGCAAAAGGAGTTTATTGTAGTGGCGGAGAGAGCTCTATTGACAACAATTGACTTTGATCTTGACATTCAGCTTCCATACAAGACACTTGTTGTGGTTCTAAAGAGATTAAATATCCCTGACCTCGCTAAGGTGGGATGGCATCTTATTGATCAGTGGCTTCAAACATCACTGTGCCTGCAGTACAAGCCCCATTACATTGCTGCTGGTTCAATTGCTCTTGTTGCTAGAATTCTAGAAGTCAAACTACCTACAGAGAAGGGAAAAATTTGGTGGTTGGAGATTGATGTGGCGCCGGAACAATTAGATGACTGGATTCATGAGTTTATTGTTCACAGATTTCCCTCTTCAACTCCTCCCTTCTTATTGTATATTGGTGTTGGGTGTTTGCTTCATTTAAGACATACCCCCTTGGTCAAGGAGAGAGGATTAGGAGAGTCTGTTATGTCTATTAACTGCCAAAATCTTGCAGAAGGTTACAACTATGCTACTACGAAGGAAGCTTTACCACCATCTCAGGGAAGTGATAGTGGTCCTGAGATTAAAGCAGTAAGATGGGAATTTGATAATCAGAACTCATTATGCAAGAGTTTAAAGATGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

276

Amino Acids

31.58

Weight (kDa)

6.45

Isoelectric Point (pI)

52.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	17 - 96	3.4e-11	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630
fragaria_vesca	FvH4_2g39390 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420
malus_domestica	MD04G1049900.v1.1 MD06G1050000.v1.1 MD08G1026200.v1.1
prunus_persica	Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1
pyrus_communis	pycom04g04390 pycom06g04230 pycom06g04240 pycom08g02030
rosa_chinensis	RchiOBHm_Chr2g0168341 RchiOBHm_Chr3g0451061 RchiOBHm_Chr6g0301611
rosa_laevigata	RLG00000011239 RLG00000021768 RLG00000025695
rosa_multiflora	Rmu_co8487951.1_g000001 Rmu_sc0000078.1_g000004 Rmu_sc0016462.1_g000004 Rmu_ssc0000452.1_g000012
rosa_roxburghii	Rroxscaffold_2G00083130 Rroxscaffold_7G00166600
rosa_rugosa	Rorug02G0532800 Rorug02G0532900 Rorug02G0533000 Rorug02G0533000 Rorug02G0630800 Rorug06G0307200 Rorug06G0307300
rosa_samantha	Rh2AG602100 Rh2BG615400 Rh2CG583100 Rh2DG625600 Rh3AG033200 Rh3BG033500 Rh3CG032200 Rh3DG033200 Rh6AG420100 Rh6BG426200 Rh6CG433100 Rh6DG419500
rosa_wichuraiana	Rw0G019830 Rw2G049980 Rw3G002440 Rw6G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	517
AciI	CCGC	2 cut(s)	97, 251
AcsI	RAATTY	4 cut(s)	215, 456, 492, 785
AcyI	GRCGYC	1 cut(s)	518
AfaI	GTAC	1 cut(s)	410
AfiI	CCNNNNNNNGG	2 cut(s)	355, 743
AgsI	TTSAA	4 cut(s)	215, 389, 438, 576
AluBI	AGCT	3 cut(s)	260, 298, 728
AluI	AGCT	3 cut(s)	260, 298, 728
Alw21I	GWGCWC	1 cut(s)	262
Alw26I	GTCTC	1 cut(s)	120
ApeKI	GCWGC	2 cut(s)	55, 428
ApoI	RAATTY	4 cut(s)	215, 456, 492, 785
AspLEI	GCGC	1 cut(s)	520
AspS9I	GGNCC	1 cut(s)	758
AvaII	GGWCC	1 cut(s)	758
BanI	GGYRCC	1 cut(s)	517
BanII	GRGCYC	1 cut(s)	262
BarI	GAAGNNNNNNTAC	2 cut(s)	456, 488
Bbv12I	GWGCWC	1 cut(s)	262
BbvI	GCAGC	2 cut(s)	42, 415
BccI	CCATC	3 cut(s)	357, 745, 774
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BclI	TGATCA	1 cut(s)	376
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	2 cut(s)	453, 461
BfmI	CTRYAG	2 cut(s)	404, 477
BfoI	RGCGCY	1 cut(s)	521
BisI	GCNGC	2 cut(s)	56, 429
BlsI	GCNGC	2 cut(s)	57, 430
Bme18I	GGWCC	1 cut(s)	758
BmgT120I	GGNCC	1 cut(s)	758
BmiI	GGNNCC	1 cut(s)	519
BmsI	GCATC	4 cut(s)	118, 165, 376, 813
Bpu10I	CCTNAGC	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	518
BsaJI	CCNNGG	1 cut(s)	636
BsaXI	ACNNNNNCTCC	2 cut(s)	651, 681
Bsc4I	CCNNNNNNNGG	2 cut(s)	355, 743
Bse1I	ACTGG	1 cut(s)	542
Bse3DI	GCAATG	1 cut(s)	423
BseDI	CCNNGG	1 cut(s)	636
BseGI	GGATG	2 cut(s)	156, 368
BseLI	CCNNNNNNNGG	2 cut(s)	355, 743
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	3 cut(s)	188, 753, 755
BseNI	ACTGG	1 cut(s)	542
BseRI	GAGGAG	1 cut(s)	570
BseXI	GCAGC	2 cut(s)	42, 415
BshNI	GGYRCC	1 cut(s)	517
BsiHKAI	GWGCWC	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	521
BslI	CCNNNNNNNGG	2 cut(s)	355, 743
BsmAI	GTCTC	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	2 cut(s)	283, 376
BspACI	CCGC	2 cut(s)	97, 251
BspCNI	CTCAG	3 cut(s)	189, 754, 754
BspHI	TCATGA	1 cut(s)	544
BspLI	GGNNCC	1 cut(s)	519
BspMAI	CTGCAG	1 cut(s)	408
BspT107I	GGYRCC	1 cut(s)	517
BsrDI	GCAATG	1 cut(s)	423
BsrI	ACTGG	1 cut(s)	542
BssECI	CCNNGG	1 cut(s)	636
BssMI	GATC	2 cut(s)	283, 376
BssNI	GRCGYC	1 cut(s)	518
BssT1I	CCWWGG	1 cut(s)	636
Bst4CI	ACNGT	1 cut(s)	399
Bst6I	CTCTTC	1 cut(s)	577
BstACI	GRCGYC	1 cut(s)	518
BstC8I	GCNNGC	3 cut(s)	154, 169, 404
BstDEI	CTNAG	5 cut(s)	123, 197, 354, 741, 762
BstENI	CCTNNNNNAGG	1 cut(s)	353
BstF5I	GGATG	2 cut(s)	156, 368
BstH2I	RGCGCY	1 cut(s)	521
BstHHI	GCGC	1 cut(s)	520
BstKTI	GATC	2 cut(s)	286, 379
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	2 cut(s)	283, 376
BstMWI	GCNNNNNNNGC	3 cut(s)	257, 412, 449
BstSFI	CTRYAG	2 cut(s)	404, 477
BstV1I	GCAGC	2 cut(s)	42, 415
BtsCI	GGATG	2 cut(s)	156, 368
BtsIMutI	CAGTG	2 cut(s)	386, 395
Cac8I	GCNNGC	3 cut(s)	154, 169, 404
CciI	TCATGA	1 cut(s)	544
CfoI	GCGC	1 cut(s)	520
Cfr13I	GGNCC	1 cut(s)	758
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	3 cut(s)	37, 119, 545
CviJI	RGCY	7 cut(s)	19, 41, 260, 298, 385, 415, 728
CviKI_1	RGCY	7 cut(s)	19, 41, 260, 298, 385, 415, 728
CviQI	GTAC	1 cut(s)	409
DdeI	CTNAG	5 cut(s)	123, 197, 354, 741, 762
DinI	GGCGCC	1 cut(s)	519
DpnI	GATC	2 cut(s)	285, 378
DpnII	GATC	2 cut(s)	283, 376
DraI	TTTAAA	1 cut(s)	819
Eam1104I	CTCTTC	1 cut(s)	577
EarI	CTCTTC	1 cut(s)	577
EciI	GGCGGA	1 cut(s)	266
Ecl136II	GAGCTC	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	636
Eco24I	GRGCYC	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	758
Eco53kI	GAGCTC	1 cut(s)	260
EcoICRI	GAGCTC	1 cut(s)	260
EcoNI	CCTNNNNNAGG	1 cut(s)	353
EcoRI	GAATTC	1 cut(s)	456
EcoT14I	CCWWGG	1 cut(s)	636
EcoT22I	ATGCAT	2 cut(s)	111, 828
EcoT38I	GRGCYC	1 cut(s)	262
EgeI	GGCGCC	1 cut(s)	519
EheI	GGCGCC	1 cut(s)	519
ErhI	CCWWGG	1 cut(s)	636
FaeI	CATG	3 cut(s)	40, 122, 548
FatI	CATG	3 cut(s)	36, 118, 544
FbaI	TGATCA	1 cut(s)	376
Fnu4HI	GCNGC	2 cut(s)	56, 429
FokI	GGATG	2 cut(s)	143, 375
FriOI	GRGCYC	1 cut(s)	262
Fsp4HI	GCNGC	2 cut(s)	56, 429
FspBI	CTAG	2 cut(s)	453, 461
GlaI	GCGC	1 cut(s)	519
GluI	GCNGC	2 cut(s)	56, 429
HaeII	RGCGCY	1 cut(s)	521
HapII	CCGG	1 cut(s)	521
HhaI	GCGC	1 cut(s)	520
Hin1I	GRCGYC	1 cut(s)	518
Hin1II	CATG	3 cut(s)	40, 122, 548
Hin6I	GCGC	1 cut(s)	518
HinP1I	GCGC	1 cut(s)	518
HindIII	AAGCTT	1 cut(s)	726
HinfI	GANTC	2 cut(s)	541, 662
HpaII	CCGG	1 cut(s)	521
Hpy166II	GTNNAC	2 cut(s)	178, 559
Hpy188I	TCNGA	4 cut(s)	66, 198, 224, 798
Hpy188III	TCNNGA	4 cut(s)	287, 461, 545, 761
Hpy8I	GTNNAC	2 cut(s)	178, 559
HpyAV	CCTTC	4 cut(s)	478, 595, 692, 715
HpyCH4III	ACNGT	1 cut(s)	399
HpyF10VI	GCNNNNNNNGC	3 cut(s)	257, 412, 449
HpyF3I	CTNAG	5 cut(s)	123, 197, 354, 741, 762
Hsp92I	GRCGYC	1 cut(s)	518
Hsp92II	CATG	3 cut(s)	40, 122, 548
HspAI	GCGC	1 cut(s)	518
KasI	GGCGCC	1 cut(s)	517
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	2 cut(s)	283, 376
LpnPI	CCDG	8 cut(s)	181, 357, 416, 417, 523, 534, 728, 774
Lsp1109I	GCAGC	2 cut(s)	42, 415
LweI	GCATC	4 cut(s)	118, 165, 376, 813
MaeI	CTAG	2 cut(s)	453, 461
MaeIII	GTNAC	1 cut(s)	701
MalI	GATC	2 cut(s)	285, 378
MboI	GATC	2 cut(s)	283, 376
MboII	GAAGA	1 cut(s)	564
MfeI	CAATTG	3 cut(s)	69, 273, 438
MhlI	GDGCHC	1 cut(s)	262
MluCI	AATT	8 cut(s)	69, 215, 273, 438, 456, 492, 527, 785
Mly113I	GGCGCC	1 cut(s)	518
MlyI	GAGTC	1 cut(s)	671
MmeI	TCCRAC	1 cut(s)	483
MnlI	CCTC	5 cut(s)	69, 359, 580, 591, 644
Mph1103I	ATGCAT	2 cut(s)	111, 828
MseI	TTAA	5 cut(s)	335, 623, 678, 768, 818
MslI	CAYNNNNRTG	1 cut(s)	397
MspI	CCGG	1 cut(s)	521
MunI	CAATTG	3 cut(s)	69, 273, 438
MwoI	GCNNNNNNNGC	3 cut(s)	257, 412, 449
NarI	GGCGCC	1 cut(s)	518
NdeII	GATC	2 cut(s)	283, 376
NlaIII	CATG	3 cut(s)	40, 122, 548
NlaIV	GGNNCC	1 cut(s)	519
NsiI	ATGCAT	2 cut(s)	111, 828
PagI	TCATGA	1 cut(s)	544
PfeI	GAWTC	1 cut(s)	541
PkrI	GCNGC	2 cut(s)	57, 430
PleI	GAGTC	1 cut(s)	670
PluTI	GGCGCC	1 cut(s)	521
PpsI	GAGTC	1 cut(s)	670
Psp124BI	GAGCTC	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	519
PspPI	GGNCC	1 cut(s)	758
PstI	CTGCAG	1 cut(s)	408
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
RseI	CAYNNNNRTG	1 cut(s)	397
SacI	GAGCTC	1 cut(s)	262
SaqAI	TTAA	5 cut(s)	335, 623, 678, 768, 818
SatI	GCNGC	2 cut(s)	56, 429
Sau3AI	GATC	2 cut(s)	283, 376
Sau96I	GGNCC	1 cut(s)	758
SchI	GAGTC	1 cut(s)	671
SduI	GDGCHC	1 cut(s)	262
SetI	ASST	7 cut(s)	262, 300, 351, 360, 478, 703, 730
SfaNI	GCATC	4 cut(s)	118, 165, 376, 813
SfcI	CTRYAG	2 cut(s)	404, 477
SfoI	GGCGCC	1 cut(s)	519
SinI	GGWCC	1 cut(s)	758
SmiMI	CAYNNNNRTG	1 cut(s)	397
Sse9I	AATT	8 cut(s)	69, 215, 273, 438, 456, 492, 527, 785
SsiI	CCGC	2 cut(s)	97, 251
SspDI	GGCGCC	1 cut(s)	517
SspMI	CTAG	2 cut(s)	453, 461
SstI	GAGCTC	1 cut(s)	262
StyI	CCWWGG	1 cut(s)	636
TaaI	ACNGT	1 cut(s)	399
TasI	AATT	8 cut(s)	69, 215, 273, 438, 456, 492, 527, 785
TatI	WGTACW	1 cut(s)	408
TfiI	GAWTC	1 cut(s)	541
Tru1I	TTAA	5 cut(s)	335, 623, 678, 768, 818
Tru9I	TTAA	5 cut(s)	335, 623, 678, 768, 818
TscAI	CASTG	2 cut(s)	386, 402
TseI	GCWGC	2 cut(s)	55, 428
TspDTI	ATGAA	2 cut(s)	533, 608
TspRI	CASTG	2 cut(s)	386, 402
VpaK11BI	GGWCC	1 cut(s)	758
XagI	CCTNNNNNAGG	1 cut(s)	353
XapI	RAATTY	4 cut(s)	215, 456, 492, 785
XbaI	TCTAGA	1 cut(s)	460
XspI	CTAG	2 cut(s)	453, 461
Zsp2I	ATGCAT	2 cut(s)	111, 828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.