Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001147

Physical Location & Seq

Genomic Coordinates Reverse (-)

47695647 .. 47696637

Gene Structure 991 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025695

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCTATGTCTCATCTGACAAGTGCAACTGCAAAGATGTTGTGCCACCGCTTGTATATGCATCAGTCTCATGCTAAGAATGATTGGCAGACTAATGCAACTGCTTGTATCCTTGTTGACTGCAAAGTGGACGACACACCACACTTTCTGAGTGATTTTAATCCGTCTGCCTTAGAGAGTATCAGACAAAGACTTCCATACAAGACACTTCTTGCGGTTCTAAAGAGATTAAATATCCCTGACCTCGCTAAGGTTGCTAAGGTGGCATGGCATCTTATTGATCAGTGGCTTCAAACATCACTGTGCCTGCAGTACAAGCCCCATTACATTGCTGCTGGTTCAATTGCTCTTGTTGCTAGAATTCTAGAAGTCAAACTACCTACAGAGAAGGGAAAAGTTTGGTCGTTGGAGATTATGTGGCGCCGGAACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

145

Amino Acids

16.52

Weight (kDa)

9.42

Isoelectric Point (pI)

52.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630
fragaria_vesca	FvH4_2g39390 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420
malus_domestica	MD04G1049900.v1.1 MD06G1050000.v1.1 MD08G1026200.v1.1
prunus_persica	Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1
pyrus_communis	pycom04g04390 pycom06g04230 pycom06g04240 pycom08g02030
rosa_chinensis	RchiOBHm_Chr2g0168341 RchiOBHm_Chr3g0451061 RchiOBHm_Chr6g0301611
rosa_laevigata	RLG00000011239 RLG00000021768 RLG00000025695
rosa_multiflora	Rmu_co8487951.1_g000001 Rmu_sc0000078.1_g000004 Rmu_sc0016462.1_g000004 Rmu_ssc0000452.1_g000012
rosa_roxburghii	Rroxscaffold_2G00083130 Rroxscaffold_7G00166600
rosa_rugosa	Rorug02G0532800 Rorug02G0532900 Rorug02G0533000 Rorug02G0533000 Rorug02G0630800 Rorug06G0307200 Rorug06G0307300
rosa_samantha	Rh2AG602100 Rh2BG615400 Rh2CG583100 Rh2DG625600 Rh3AG033200 Rh3BG033500 Rh3CG032200 Rh3DG033200 Rh6AG420100 Rh6BG426200 Rh6CG433100 Rh6DG419500
rosa_wichuraiana	Rw0G019830 Rw2G049980 Rw3G002440 Rw6G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	420
AciI	CCGC	2 cut(s)	49, 215
AcsI	RAATTY	1 cut(s)	360
AcyI	GRCGYC	1 cut(s)	421
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	1 cut(s)	250
AgsI	TTSAA	2 cut(s)	293, 342
Alw26I	GTCTC	2 cut(s)	15, 72
ApeKI	GCWGC	1 cut(s)	332
ApoI	RAATTY	1 cut(s)	360
AspLEI	GCGC	1 cut(s)	423
BanI	GGYRCC	1 cut(s)	420
BarI	GAAGNNNNNNTAC	2 cut(s)	360, 392
BbvI	GCAGC	1 cut(s)	319
BciVI	GTATCC	1 cut(s)	119
BclI	TGATCA	1 cut(s)	280
BcoDI	GTCTC	2 cut(s)	15, 72
BfaI	CTAG	2 cut(s)	357, 365
BfmI	CTRYAG	2 cut(s)	308, 381
BfoI	RGCGCY	1 cut(s)	424
BfuI	GTATCC	1 cut(s)	119
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
BmiI	GGNNCC	1 cut(s)	422
BmsI	GCATC	2 cut(s)	70, 280
Bpu10I	CCTNAGC	2 cut(s)	249, 258
BsaBI	GATNNNNATC	1 cut(s)	159
BsaHI	GRCGYC	1 cut(s)	421
BsaXI	ACNNNNNCTCC	2 cut(s)	401, 431
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse3DI	GCAATG	1 cut(s)	327
Bse8I	GATNNNNATC	1 cut(s)	159
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	1 cut(s)	140
BseXI	GCAGC	1 cut(s)	319
BshNI	GGYRCC	1 cut(s)	420
BsiSI	CCGG	1 cut(s)	424
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmAI	GTCTC	2 cut(s)	15, 72
Bsp143I	GATC	1 cut(s)	280
BspACI	CCGC	2 cut(s)	49, 215
BspCNI	CTCAG	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	422
BspMAI	CTGCAG	1 cut(s)	312
BspT107I	GGYRCC	1 cut(s)	420
BsrDI	GCAATG	1 cut(s)	327
BssMI	GATC	1 cut(s)	280
BssNI	GRCGYC	1 cut(s)	421
Bst4CI	ACNGT	1 cut(s)	303
BstACI	GRCGYC	1 cut(s)	421
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	5 cut(s)	75, 149, 172, 249, 258
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstH2I	RGCGCY	1 cut(s)	424
BstHHI	GCGC	1 cut(s)	423
BstKTI	GATC	1 cut(s)	283
BstMAI	GTCTC	2 cut(s)	15, 72
BstMBI	GATC	1 cut(s)	280
BstMWI	GCNNNNNNNGC	4 cut(s)	254, 263, 316, 353
BstSFI	CTRYAG	2 cut(s)	308, 381
BstV1I	GCAGC	1 cut(s)	319
BsuI	GTATCC	1 cut(s)	119
BtsIMutI	CAGTG	2 cut(s)	290, 299
Cac8I	GCNNGC	1 cut(s)	308
CfoI	GCGC	1 cut(s)	423
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	2 cut(s)	71, 267
CviJI	RGCY	3 cut(s)	5, 289, 319
CviKI_1	RGCY	3 cut(s)	5, 289, 319
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	5 cut(s)	75, 149, 172, 249, 258
DinI	GGCGCC	1 cut(s)	422
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoRI	GAATTC	1 cut(s)	360
EcoT22I	ATGCAT	1 cut(s)	63
EgeI	GGCGCC	1 cut(s)	422
EheI	GGCGCC	1 cut(s)	422
FaeI	CATG	2 cut(s)	74, 270
FaiI	YATR	7 cut(s)	8, 57, 59, 72, 199, 268, 416
FatI	CATG	2 cut(s)	70, 266
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	1 cut(s)	333
Fsp4HI	GCNGC	1 cut(s)	333
FspBI	CTAG	2 cut(s)	357, 365
GlaI	GCGC	1 cut(s)	422
GluI	GCNGC	1 cut(s)	333
HaeII	RGCGCY	1 cut(s)	424
HapII	CCGG	1 cut(s)	424
HhaI	GCGC	1 cut(s)	423
Hin1I	GRCGYC	1 cut(s)	421
Hin1II	CATG	2 cut(s)	74, 270
Hin6I	GCGC	1 cut(s)	421
HinP1I	GCGC	1 cut(s)	421
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HpaII	CCGG	1 cut(s)	424
Hpy166II	GTNNAC	2 cut(s)	118, 130
Hpy188I	TCNGA	3 cut(s)	18, 150, 185
Hpy188III	TCNNGA	1 cut(s)	365
Hpy8I	GTNNAC	2 cut(s)	118, 130
HpyAV	CCTTC	1 cut(s)	382
HpyCH4III	ACNGT	1 cut(s)	303
HpyCH4V	TGCA	6 cut(s)	26, 32, 61, 98, 123, 310
HpyF10VI	GCNNNNNNNGC	4 cut(s)	254, 263, 316, 353
HpyF3I	CTNAG	5 cut(s)	75, 149, 172, 249, 258
Hsp92I	GRCGYC	1 cut(s)	421
Hsp92II	CATG	2 cut(s)	74, 270
HspAI	GCGC	1 cut(s)	421
KasI	GGCGCC	1 cut(s)	420
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	280
LpnPI	CCDG	3 cut(s)	252, 320, 321
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	2 cut(s)	70, 280
MaeI	CTAG	2 cut(s)	357, 365
MalI	GATC	1 cut(s)	282
MboI	GATC	1 cut(s)	280
MfeI	CAATTG	1 cut(s)	342
MluCI	AATT	3 cut(s)	342, 360, 430
Mly113I	GGCGCC	1 cut(s)	421
MmeI	TCCRAC	1 cut(s)	387
MnlI	CCTC	1 cut(s)	254
Mph1103I	ATGCAT	1 cut(s)	63
MseI	TTAA	2 cut(s)	159, 230
MslI	CAYNNNNRTG	1 cut(s)	301
MspI	CCGG	1 cut(s)	424
MunI	CAATTG	1 cut(s)	342
MwoI	GCNNNNNNNGC	4 cut(s)	254, 263, 316, 353
NarI	GGCGCC	1 cut(s)	421
NdeII	GATC	1 cut(s)	280
NlaIII	CATG	2 cut(s)	74, 270
NlaIV	GGNNCC	1 cut(s)	422
NsiI	ATGCAT	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	334
PluTI	GGCGCC	1 cut(s)	424
PspN4I	GGNNCC	1 cut(s)	422
PstI	CTGCAG	1 cut(s)	312
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
RseI	CAYNNNNRTG	1 cut(s)	301
SaqAI	TTAA	2 cut(s)	159, 230
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	1 cut(s)	280
SetI	ASST	4 cut(s)	246, 255, 264, 382
SfaNI	GCATC	2 cut(s)	70, 280
SfcI	CTRYAG	2 cut(s)	308, 381
SfoI	GGCGCC	1 cut(s)	422
SmiMI	CAYNNNNRTG	1 cut(s)	301
Sse9I	AATT	3 cut(s)	342, 360, 430
SsiI	CCGC	2 cut(s)	49, 215
SspDI	GGCGCC	1 cut(s)	420
SspMI	CTAG	2 cut(s)	357, 365
TaaI	ACNGT	1 cut(s)	303
TasI	AATT	3 cut(s)	342, 360, 430
TatI	WGTACW	1 cut(s)	312
Tru1I	TTAA	2 cut(s)	159, 230
Tru9I	TTAA	2 cut(s)	159, 230
TscAI	CASTG	2 cut(s)	290, 306
TseI	GCWGC	1 cut(s)	332
TspGWI	ACGGA	1 cut(s)	153
TspRI	CASTG	2 cut(s)	290, 306
XagI	CCTNNNNNAGG	1 cut(s)	248
XapI	RAATTY	1 cut(s)	360
XbaI	TCTAGA	1 cut(s)	364
XspI	CTAG	2 cut(s)	357, 365
Zsp2I	ATGCAT	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.