Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001147

Physical Location & Seq

Genomic Coordinates Reverse (-)

61343214 .. 61347848

Gene Structure 4635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG420100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGATGTTGTGCCACCAGTTTTATATGCGTCAATCTCATGCTAAGAATGGTTGGCAGACGGTGGCAACTGCGAGCATCTTTCTCGCATGCAAAGCAGAAGATACACCACGCTATCTGAATGATGTTGTTGTGGTGGCATATGAGATGGTGCACAAATTTGATTCATCTGCCTTGCACCGAATCAGACAAAAAGAATTTCTCAATAAGCAAAAGGAATTGATCCTAGTTGCGGAGAGACTTCTGCTGTCAACAATTGGCTTTGATCTAGACATTCAGCTTCCATACAAGATACTTGTTGCTGCTCTAAAGAGATTGGATCTTCTCCCTGACCTTGCTAAGGCGGCATGGAGTTTTGTGAACGATTGGCTTCGCACATCATTGTGCTTGCAGTACAAGCCCCATTACATTGCAGCTGGTTCGGTCGCTCTTGCTGCTCATTTTCAAAAGGTGAAACTACCTAAAGAGAAGGGAAAAGTTTGGTGGCTGGAGTTTGATGTTACGCCGAAACAGTTGGATGAGGTCATTCAGCGGATGCATAGTATGTTCAAGCCTCTACCAGCTAAAACTGGGAAGGCCGTTCAACCTGAAATTTTATCCGGAAAGCCAATTGATAGTAGCCCTCAATCATGTATTTCAAGTGAAGCAATGGTAGACCAGCATTCTAGGCATGGTGCCACTGTGGATGATGGAGGATTAGGAGGAGAGTCTGTTATGTCTACATGTAGGCAAAATCTTGGAGGTGAGAACAATCTTACTGGGAAGGATGCTTTACCATGCCAGACGAATAATAGGAGTATTGTCAAGGATAGTGGTGGTGAGATCAAGCCAATAAGAGGGGAATTGGAGGATCAGAGCACAAGATGCAAGATTCTTGATGTTCCTAAAAGCTGTGGTAAGATCAATATTAACCGTATTCGAGAATTGAAGAGGAGAAGATGTGATAAAGGTGTAAATAAGAAGTTGGCGGGCTCCATTACTGATGAGTTAGATCCTGAAGCCTGGATAGAAAGTGAGCTTGAAAACGGAGTAGAGCTGGAAGATGCATCTGCAGCAAAGAAACAAAGGAAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

357

Amino Acids

39.96

Weight (kDa)

8.82

Isoelectric Point (pI)

49.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	3 - 89	6.4e-08	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630
fragaria_vesca	FvH4_2g39390 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420
malus_domestica	MD04G1049900.v1.1 MD06G1050000.v1.1 MD08G1026200.v1.1
prunus_persica	Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1
pyrus_communis	pycom04g04390 pycom06g04230 pycom06g04240 pycom08g02030
rosa_chinensis	RchiOBHm_Chr2g0168341 RchiOBHm_Chr3g0451061 RchiOBHm_Chr6g0301611
rosa_laevigata	RLG00000011239 RLG00000021768 RLG00000025695
rosa_multiflora	Rmu_co8487951.1_g000001 Rmu_sc0000078.1_g000004 Rmu_sc0016462.1_g000004 Rmu_ssc0000452.1_g000012
rosa_roxburghii	Rroxscaffold_2G00083130 Rroxscaffold_7G00166600
rosa_rugosa	Rorug02G0532800 Rorug02G0532900 Rorug02G0533000 Rorug02G0533000 Rorug02G0630800 Rorug06G0307200 Rorug06G0307300
rosa_samantha	Rh2AG602100 Rh2BG615400 Rh2CG583100 Rh2DG625600 Rh3AG033200 Rh3BG033500 Rh3CG032200 Rh3DG033200 Rh6AG420100 Rh6BG426200 Rh6CG433100 Rh6DG419500
rosa_wichuraiana	Rw0G019830 Rw2G049980 Rw3G002440 Rw6G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	671
AccI	GTMKAC	2 cut(s)	651, 716
AccIII	TCCGGA	1 cut(s)	596
AciI	CCGC	4 cut(s)	230, 341, 529, 965
AclWI	GGATC	4 cut(s)	214, 324, 855, 983
AcsI	RAATTY	3 cut(s)	155, 194, 588
AcuI	CTGAAG	1 cut(s)	1014
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	3 cut(s)	229, 337, 833
AflIII	ACRYGT	1 cut(s)	719
AgsI	TTSAA	6 cut(s)	443, 547, 581, 636, 925, 1019
AjnI	CCWGG	1 cut(s)	998
AluBI	AGCT	6 cut(s)	277, 413, 560, 888, 1015, 1033
AluI	AGCT	6 cut(s)	277, 413, 560, 888, 1015, 1033
Alw21I	GWGCWC	2 cut(s)	153, 857
Alw26I	GTCTC	1 cut(s)	229
Alw44I	GTGCAC	1 cut(s)	149
AlwI	GGATC	4 cut(s)	214, 324, 855, 983
Aor13HI	TCCGGA	1 cut(s)	596
AoxI	GGCC	1 cut(s)	573
ApaLI	GTGCAC	1 cut(s)	149
ApeKI	GCWGC	4 cut(s)	299, 410, 431, 1049
ApoI	RAATTY	3 cut(s)	155, 194, 588
AsuHPI	GGTGA	3 cut(s)	460, 752, 827
BaeGI	GKGCMC	1 cut(s)	153
BanI	GGYRCC	1 cut(s)	671
BanII	GRGCYC	1 cut(s)	971
Bbv12I	GWGCWC	2 cut(s)	153, 857
BbvI	GCAGC	4 cut(s)	286, 418, 422, 1061
BccI	CCATC	2 cut(s)	139, 680
BceAI	ACGGC	1 cut(s)	560
BcgI	CGANNNNNNTGC	4 cut(s)	64, 98, 399, 433
BciT130I	CCWGG	1 cut(s)	1000
BcoDI	GTCTC	1 cut(s)	229
BfaI	CTAG	3 cut(s)	224, 266, 663
BfmI	CTRYAG	1 cut(s)	1047
BisI	GCNGC	5 cut(s)	300, 342, 411, 432, 1050
BlsI	GCNGC	5 cut(s)	301, 343, 412, 433, 1051
Bme1390I	CCNGG	1 cut(s)	1000
BmiI	GGNNCC	2 cut(s)	673, 970
BmrFI	CCNGG	1 cut(s)	1000
BmrI	ACTGGG	2 cut(s)	576, 765
BmsI	GCATC	6 cut(s)	84, 522, 754, 851, 1030, 1052
BmuI	ACTGGG	2 cut(s)	576, 765
BpmI	CTGGAG	1 cut(s)	506
Bpu10I	CCTNAGC	1 cut(s)	336
BsaWI	WCCGGW	1 cut(s)	596
BsaXI	ACNNNNNCTCC	4 cut(s)	693, 723, 922, 952
Bsc4I	CCNNNNNNNGG	3 cut(s)	229, 337, 833
Bse1I	ACTGG	3 cut(s)	16, 571, 760
Bse3DI	GCAATG	2 cut(s)	405, 651
BseAI	TCCGGA	1 cut(s)	596
BseBI	CCWGG	1 cut(s)	1000
BseGI	GGATG	4 cut(s)	520, 537, 688, 769
BseLI	CCNNNNNNNGG	3 cut(s)	229, 337, 833
BseMI	GCAATG	2 cut(s)	405, 651
BseNI	ACTGG	3 cut(s)	16, 571, 760
BseRI	GAGGAG	2 cut(s)	714, 943
BseSI	GKGCMC	1 cut(s)	153
BseXI	GCAGC	4 cut(s)	286, 418, 422, 1061
Bsh1285I	CGRYCG	1 cut(s)	423
BshFI	GGCC	1 cut(s)	575
BshNI	GGYRCC	1 cut(s)	671
BsiEI	CGRYCG	1 cut(s)	423
BsiHKAI	GWGCWC	2 cut(s)	153, 857
BsiSI	CCGG	1 cut(s)	597
BslI	CCNNNNNNNGG	3 cut(s)	229, 337, 833
BsmAI	GTCTC	1 cut(s)	229
BsmI	GAATGC	1 cut(s)	658
BsnI	GGCC	1 cut(s)	575
Bsp1286I	GDGCHC	3 cut(s)	153, 857, 971
Bsp13I	TCCGGA	1 cut(s)	596
Bsp143I	GATC	7 cut(s)	219, 262, 316, 819, 847, 897, 988
BspACI	CCGC	4 cut(s)	230, 341, 529, 965
BspANI	GGCC	1 cut(s)	575
BspEI	TCCGGA	1 cut(s)	596
BspLI	GGNNCC	2 cut(s)	673, 970
BspMAI	CTGCAG	1 cut(s)	1051
BspPI	GGATC	4 cut(s)	214, 324, 855, 983
BspT107I	GGYRCC	1 cut(s)	671
BsrDI	GCAATG	2 cut(s)	405, 651
BsrI	ACTGG	3 cut(s)	16, 571, 760
BssMI	GATC	7 cut(s)	219, 262, 316, 819, 847, 897, 988
Bst2UI	CCWGG	1 cut(s)	1000
Bst4CI	ACNGT	4 cut(s)	61, 510, 679, 911
Bst6I	CTCTTC	1 cut(s)	920
BstAPI	GCANNNNNTGC	1 cut(s)	861
BstC8I	GCNNGC	4 cut(s)	73, 88, 386, 967
BstDEI	CTNAG	3 cut(s)	42, 336, 1071
BstENI	CCTNNNNNAGG	1 cut(s)	335
BstF5I	GGATG	4 cut(s)	520, 537, 688, 769
BstKTI	GATC	7 cut(s)	222, 265, 319, 822, 850, 900, 991
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	7 cut(s)	219, 262, 316, 819, 847, 897, 988
BstMCI	CGRYCG	1 cut(s)	423
BstMWI	GCNNNNNNNGC	7 cut(s)	92, 341, 394, 431, 664, 861, 1049
BstNI	CCWGG	1 cut(s)	1000
BstNSI	RCATGY	2 cut(s)	90, 723
BstSCI	CCNGG	1 cut(s)	998
BstSFI	CTRYAG	1 cut(s)	1047
BstSLI	GKGCMC	1 cut(s)	153
BstV1I	GCAGC	4 cut(s)	286, 418, 422, 1061
BstX2I	RGATCY	2 cut(s)	316, 988
BstYI	RGATCY	2 cut(s)	316, 988
BsuRI	GGCC	1 cut(s)	575
BtsCI	GGATG	4 cut(s)	520, 537, 688, 769
BtsIMutI	CAGTG	1 cut(s)	675
Cac8I	GCNNGC	4 cut(s)	73, 88, 386, 967
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	391
CspCI	CAANNNNNGTGG	2 cut(s)	790, 825
CviAII	CATG	7 cut(s)	38, 87, 345, 627, 668, 720, 774
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	3 cut(s)	42, 336, 1071
DpnI	GATC	7 cut(s)	221, 264, 318, 821, 849, 899, 990
DpnII	GATC	7 cut(s)	219, 262, 316, 819, 847, 897, 988
Eam1104I	CTCTTC	1 cut(s)	920
EarI	CTCTTC	1 cut(s)	920
Eco24I	GRGCYC	1 cut(s)	971
Eco57I	CTGAAG	1 cut(s)	1014
EcoNI	CCTNNNNNAGG	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	998
EcoT22I	ATGCAT	2 cut(s)	537, 1045
EcoT38I	GRGCYC	1 cut(s)	971
FaeI	CATG	7 cut(s)	41, 90, 348, 630, 671, 723, 777
FalI	AAGNNNNNCTT	1 cut(s)	1054
FatI	CATG	7 cut(s)	37, 86, 344, 626, 667, 719, 773
FauI	CCCGC	1 cut(s)	958
FauNDI	CATATG	1 cut(s)	139
FblI	GTMKAC	2 cut(s)	651, 716
Fnu4HI	GCNGC	5 cut(s)	300, 342, 411, 432, 1050
FokI	GGATG	4 cut(s)	527, 544, 695, 776
FriOI	GRGCYC	1 cut(s)	971
Fsp4HI	GCNGC	5 cut(s)	300, 342, 411, 432, 1050
FspBI	CTAG	3 cut(s)	224, 266, 663
GluI	GCNGC	5 cut(s)	300, 342, 411, 432, 1050
GsuI	CTGGAG	1 cut(s)	506
HaeIII	GGCC	1 cut(s)	575
HapII	CCGG	1 cut(s)	597
HgaI	GACGC	1 cut(s)	17
Hin1II	CATG	7 cut(s)	41, 90, 348, 630, 671, 723, 777
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HinfI	GANTC	4 cut(s)	161, 180, 704, 868
HpaII	CCGG	1 cut(s)	597
HphI	GGTGA	3 cut(s)	460, 752, 827
Hpy166II	GTNNAC	5 cut(s)	151, 249, 358, 652, 717
Hpy188I	TCNGA	3 cut(s)	117, 185, 852
Hpy188III	TCNNGA	5 cut(s)	266, 597, 872, 917, 992
Hpy8I	GTNNAC	5 cut(s)	151, 249, 358, 652, 717
HpyAV	CCTTC	4 cut(s)	460, 565, 754, 1060
HpyCH4III	ACNGT	4 cut(s)	61, 510, 679, 911
HpyCH4V	TGCA	9 cut(s)	90, 151, 175, 388, 410, 535, 864, 1043, 1049
HpyF10VI	GCNNNNNNNGC	7 cut(s)	92, 341, 394, 431, 664, 861, 1049
HpyF3I	CTNAG	3 cut(s)	42, 336, 1071
Hsp92II	CATG	7 cut(s)	41, 90, 348, 630, 671, 723, 777
Kpn2I	TCCGGA	1 cut(s)	596
Kzo9I	GATC	7 cut(s)	219, 262, 316, 819, 847, 897, 988
LmnI	GCTCC	1 cut(s)	974
Lsp1109I	GCAGC	4 cut(s)	286, 418, 422, 1061
LweI	GCATC	6 cut(s)	84, 522, 754, 851, 1030, 1052
MaeI	CTAG	3 cut(s)	224, 266, 663
MaeIII	GTNAC	1 cut(s)	496
MalI	GATC	7 cut(s)	221, 264, 318, 821, 849, 899, 990
MboI	GATC	7 cut(s)	219, 262, 316, 819, 847, 897, 988
MboII	GAAGA	5 cut(s)	110, 311, 937, 945, 1049
MfeI	CAATTG	2 cut(s)	252, 606
MflI	RGATCY	2 cut(s)	316, 988
MhlI	GDGCHC	3 cut(s)	153, 857, 971
MluCI	AATT	8 cut(s)	155, 194, 215, 252, 588, 606, 839, 920
MlyI	GAGTC	1 cut(s)	713
MmeI	TCCRAC	1 cut(s)	492
MnlI	CCTC	9 cut(s)	511, 561, 630, 683, 692, 731, 827, 838, 921
Mph1103I	ATGCAT	2 cut(s)	537, 1045
MroI	TCCGGA	1 cut(s)	596
MseI	TTAA	1 cut(s)	906
MslI	CAYNNNNRTG	1 cut(s)	379
MspA1I	CMGCKG	2 cut(s)	413, 529
MspI	CCGG	1 cut(s)	597
MspR9I	CCNGG	1 cut(s)	1000
MunI	CAATTG	2 cut(s)	252, 606
Mva1269I	GAATGC	1 cut(s)	658
MvaI	CCWGG	1 cut(s)	1000
MwoI	GCNNNNNNNGC	7 cut(s)	92, 341, 394, 431, 664, 861, 1049
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	7 cut(s)	219, 262, 316, 819, 847, 897, 988
NlaIII	CATG	7 cut(s)	41, 90, 348, 630, 671, 723, 777
NlaIV	GGNNCC	2 cut(s)	673, 970
NsiI	ATGCAT	2 cut(s)	537, 1045
NspI	RCATGY	2 cut(s)	90, 723
PaeI	GCATGC	1 cut(s)	90
PciI	ACATGT	1 cut(s)	719
PctI	GAATGC	1 cut(s)	658
PfeI	GAWTC	3 cut(s)	161, 180, 868
PkrI	GCNGC	5 cut(s)	301, 343, 412, 433, 1051
PleI	GAGTC	1 cut(s)	712
PpsI	GAGTC	1 cut(s)	712
PscI	ACATGT	1 cut(s)	719
Psp6I	CCWGG	1 cut(s)	998
PspGI	CCWGG	1 cut(s)	998
PspN4I	GGNNCC	2 cut(s)	673, 970
PstI	CTGCAG	1 cut(s)	1051
PsuI	RGATCY	2 cut(s)	316, 988
PvuII	CAGCTG	1 cut(s)	413
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
RseI	CAYNNNNRTG	1 cut(s)	379
SaqAI	TTAA	1 cut(s)	906
SatI	GCNGC	5 cut(s)	300, 342, 411, 432, 1050
Sau3AI	GATC	7 cut(s)	219, 262, 316, 819, 847, 897, 988
SchI	GAGTC	1 cut(s)	713
ScrFI	CCNGG	1 cut(s)	1000
SduI	GDGCHC	3 cut(s)	153, 857, 971
SfaNI	GCATC	6 cut(s)	84, 522, 754, 851, 1030, 1052
SfcI	CTRYAG	1 cut(s)	1047
SmiMI	CAYNNNNRTG	1 cut(s)	379
SphI	GCATGC	1 cut(s)	90
Sse9I	AATT	8 cut(s)	155, 194, 215, 252, 588, 606, 839, 920
SsiI	CCGC	4 cut(s)	230, 341, 529, 965
SspI	AATATT	1 cut(s)	904
SspMI	CTAG	3 cut(s)	224, 266, 663
StyD4I	CCNGG	1 cut(s)	998
TaaI	ACNGT	4 cut(s)	61, 510, 679, 911
TaqI	TCGA	1 cut(s)	916
TaqII	GACCGA	1 cut(s)	409
TasI	AATT	8 cut(s)	155, 194, 215, 252, 588, 606, 839, 920
TatI	WGTACW	1 cut(s)	390
TauI	GCSGC	1 cut(s)	344
TfiI	GAWTC	3 cut(s)	161, 180, 868
Tru1I	TTAA	1 cut(s)	906
Tru9I	TTAA	1 cut(s)	906
TscAI	CASTG	1 cut(s)	682
TseI	GCWGC	4 cut(s)	299, 410, 431, 1049
TspDTI	ATGAA	1 cut(s)	153
TspGWI	ACGGA	1 cut(s)	1038
TspRI	CASTG	1 cut(s)	682
VneI	GTGCAC	1 cut(s)	149
XagI	CCTNNNNNAGG	1 cut(s)	335
XapI	RAATTY	3 cut(s)	155, 194, 588
XbaI	TCTAGA	1 cut(s)	265
XceI	RCATGY	2 cut(s)	90, 723
XmiI	GTMKAC	2 cut(s)	651, 716
XspI	CTAG	3 cut(s)	224, 266, 663
Zsp2I	ATGCAT	2 cut(s)	537, 1045

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.