Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001147

Physical Location & Seq

Genomic Coordinates Forward (+)

5864525 .. 5868291

Gene Structure 3767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00083130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGTACGTAGTTTGCAGAAGTCAAGCAGAAAACAAAGCTCTATCACCCAAAAACGGTGGGAAGGAAATCAGTCTGAAACTTTAATAAGAAGGCCAAGTGATCCTAGTAGCTCTCAATCATGTGTTTCAAGTGAAGCAGTGGTTGATTGTCATTTTAGGCACAGCACCTTGGTGGAAGAGGACAGAGGACTAGGAGAGTCTATTATGTCTTGCGGCCAAAATGTTGTAGAAGGTGAAAACTGTACTACCACGAAGGAAGCTTTGTCATGTCACACATGTGATAGTGGCAGTCCAAGTGGCAATGTTGAGGATGGTGGTGCTGAGATCAAACCTGTCAGAGGGGAACCAGATGATCAGGACGATAATGCGATTGACATTGACCGGATTAGAGATAAATTGAAGAGGCGGAGATCAGGTGGTAAAGTTTTAAATAAGAAGATGGTGGATGCCACAGATGTAGAGGTAGATGCTGAAGCCTGGATAGAAAGTGAGCTTGAAGGTGGTATAGTGCTAGAAGATGCCTCCCCAGAGAAGGAACAAAAGGAGGTCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

184

Amino Acids

20.19

Weight (kDa)

4.78

Isoelectric Point (pI)

83.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630
fragaria_vesca	FvH4_2g39390 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420
malus_domestica	MD04G1049900.v1.1 MD06G1050000.v1.1 MD08G1026200.v1.1
prunus_persica	Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1
pyrus_communis	pycom04g04390 pycom06g04230 pycom06g04240 pycom08g02030
rosa_chinensis	RchiOBHm_Chr2g0168341 RchiOBHm_Chr3g0451061 RchiOBHm_Chr6g0301611
rosa_laevigata	RLG00000011239 RLG00000021768 RLG00000025695
rosa_multiflora	Rmu_co8487951.1_g000001 Rmu_sc0000078.1_g000004 Rmu_sc0016462.1_g000004 Rmu_ssc0000452.1_g000012
rosa_roxburghii	Rroxscaffold_2G00083130 Rroxscaffold_7G00166600
rosa_rugosa	Rorug02G0532800 Rorug02G0532900 Rorug02G0533000 Rorug02G0533000 Rorug02G0630800 Rorug06G0307200 Rorug06G0307300
rosa_samantha	Rh2AG602100 Rh2BG615400 Rh2CG583100 Rh2DG625600 Rh3AG033200 Rh3BG033500 Rh3CG032200 Rh3DG033200 Rh6AG420100 Rh6BG426200 Rh6CG433100 Rh6DG419500
rosa_wichuraiana	Rw0G019830 Rw2G049980 Rw3G002440 Rw6G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	213, 406
AclWI	GGATC	1 cut(s)	95
AcoI	YGGCCR	1 cut(s)	214
AcuI	CTGAAG	1 cut(s)	492
AfaI	GTAC	2 cut(s)	6, 244
AfiI	CCNNNNNNNGG	3 cut(s)	54, 338, 532
AflIII	ACRYGT	1 cut(s)	275
AgsI	TTSAA	3 cut(s)	129, 400, 497
AjnI	CCWGG	1 cut(s)	476
AleI	CACNNNNGTG	2 cut(s)	170, 276
AluBI	AGCT	4 cut(s)	39, 111, 260, 493
AluI	AGCT	4 cut(s)	39, 111, 260, 493
AlwI	GGATC	1 cut(s)	95
AoxI	GGCC	2 cut(s)	92, 214
AsuHPI	GGTGA	2 cut(s)	37, 245
BccI	CCATC	2 cut(s)	305, 433
BciT130I	CCWGG	1 cut(s)	478
BclI	TGATCA	1 cut(s)	352
BfaI	CTAG	3 cut(s)	105, 191, 512
BisI	GCNGC	1 cut(s)	214
BlsI	GCNGC	1 cut(s)	215
Bme1390I	CCNGG	1 cut(s)	478
BmiI	GGNNCC	1 cut(s)	345
BmrFI	CCNGG	1 cut(s)	478
BmsI	GCATC	3 cut(s)	436, 457, 508
BsaAI	YACGTR	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	168
BsaWI	WCCGGW	1 cut(s)	381
BsaXI	ACNNNNNCTCC	3 cut(s)	400, 430, 536
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 338, 532
Bse3DI	GCAATG	1 cut(s)	307
BseBI	CCWGG	1 cut(s)	478
BseDI	CCNNGG	1 cut(s)	168
BseGI	GGATG	2 cut(s)	316, 451
BseLI	CCNNNNNNNGG	3 cut(s)	54, 338, 532
BseMI	GCAATG	1 cut(s)	307
BseMII	CTCAG	1 cut(s)	312
BshFI	GGCC	2 cut(s)	94, 216
BsiSI	CCGG	1 cut(s)	382
BslI	CCNNNNNNNGG	3 cut(s)	54, 338, 532
BsnI	GGCC	2 cut(s)	94, 216
Bsp143I	GATC	4 cut(s)	100, 324, 352, 410
BspACI	CCGC	2 cut(s)	213, 406
BspANI	GGCC	2 cut(s)	94, 216
BspCNI	CTCAG	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	345
BspPI	GGATC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	307
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	4 cut(s)	100, 324, 352, 410
BssT1I	CCWWGG	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	478
Bst4CI	ACNGT	2 cut(s)	57, 242
Bst6I	CTCTTC	2 cut(s)	171, 395
BstBAI	YACGTR	1 cut(s)	8
BstDEI	CTNAG	1 cut(s)	321
BstENI	CCTNNNNNAGG	1 cut(s)	336
BstF5I	GGATG	2 cut(s)	316, 451
BstKTI	GATC	4 cut(s)	103, 327, 355, 413
BstMBI	GATC	4 cut(s)	100, 324, 352, 410
BstNI	CCWGG	1 cut(s)	478
BstNSI	RCATGY	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	476
BstSNI	TACGTA	1 cut(s)	8
BsuRI	GGCC	2 cut(s)	94, 216
BtsCI	GGATG	2 cut(s)	316, 451
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	144
Csp6I	GTAC	2 cut(s)	5, 243
CspCI	CAANNNNNGTGG	2 cut(s)	38, 73
CviAII	CATG	3 cut(s)	120, 267, 276
CviJI	RGCY	7 cut(s)	39, 94, 111, 216, 260, 476, 493
CviKI_1	RGCY	7 cut(s)	39, 94, 111, 216, 260, 476, 493
CviQI	GTAC	2 cut(s)	5, 243
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	4 cut(s)	102, 326, 354, 412
DpnII	GATC	4 cut(s)	100, 324, 352, 410
DraI	TTTAAA	1 cut(s)	429
EaeI	YGGCCR	1 cut(s)	214
Eam1104I	CTCTTC	2 cut(s)	171, 395
EarI	CTCTTC	2 cut(s)	171, 395
EciI	GGCGGA	1 cut(s)	421
Eco105I	TACGTA	1 cut(s)	8
Eco130I	CCWWGG	1 cut(s)	168
Eco57I	CTGAAG	1 cut(s)	492
EcoNI	CCTNNNNNAGG	1 cut(s)	336
EcoRII	CCWGG	1 cut(s)	476
EcoT14I	CCWWGG	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	3 cut(s)	123, 270, 279
FaiI	YATR	5 cut(s)	121, 206, 268, 277, 506
FalI	AAGNNNNNCTT	1 cut(s)	533
FatI	CATG	3 cut(s)	119, 266, 275
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	214
FokI	GGATG	2 cut(s)	323, 458
Fsp4HI	GCNGC	1 cut(s)	214
FspBI	CTAG	3 cut(s)	105, 191, 512
GluI	GCNGC	1 cut(s)	214
HaeIII	GGCC	2 cut(s)	94, 216
HapII	CCGG	1 cut(s)	382
Hin1II	CATG	3 cut(s)	123, 270, 279
HindIII	AAGCTT	1 cut(s)	258
HinfI	GANTC	1 cut(s)	197
HpaII	CCGG	1 cut(s)	382
HphI	GGTGA	2 cut(s)	37, 245
Hpy188I	TCNGA	2 cut(s)	76, 338
Hpy188III	TCNNGA	1 cut(s)	356
HpyAV	CCTTC	6 cut(s)	56, 84, 224, 247, 491, 526
HpyCH4III	ACNGT	2 cut(s)	57, 242
HpyCH4IV	ACGT	1 cut(s)	7
HpyCH4V	TGCA	1 cut(s)	16
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	1 cut(s)	7
Hsp92II	CATG	3 cut(s)	123, 270, 279
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	4 cut(s)	100, 324, 352, 410
LpnPI	CCDG	8 cut(s)	341, 345, 360, 395, 399, 463, 490, 540
LweI	GCATC	3 cut(s)	436, 457, 508
MaeI	CTAG	3 cut(s)	105, 191, 512
MaeII	ACGT	1 cut(s)	7
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	4 cut(s)	102, 326, 354, 412
MboI	GATC	4 cut(s)	100, 324, 352, 410
MboII	GAAGA	4 cut(s)	188, 412, 448, 527
MluCI	AATT	1 cut(s)	395
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	8 cut(s)	172, 179, 301, 332, 396, 454, 532, 538
MseI	TTAA	2 cut(s)	83, 428
MslI	CAYNNNNRTG	2 cut(s)	170, 276
MspI	CCGG	1 cut(s)	382
MspR9I	CCNGG	1 cut(s)	478
MvaI	CCWGG	1 cut(s)	478
NdeII	GATC	4 cut(s)	100, 324, 352, 410
NlaIII	CATG	3 cut(s)	123, 270, 279
NlaIV	GGNNCC	1 cut(s)	345
NmuCI	GTSAC	1 cut(s)	269
NspI	RCATGY	1 cut(s)	279
OliI	CACNNNNGTG	2 cut(s)	170, 276
PciI	ACATGT	1 cut(s)	275
PkrI	GCNGC	1 cut(s)	215
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
Ppu21I	YACGTR	1 cut(s)	8
PscI	ACATGT	1 cut(s)	275
Psp6I	CCWGG	1 cut(s)	476
PspGI	CCWGG	1 cut(s)	476
PspN4I	GGNNCC	1 cut(s)	345
RsaI	GTAC	2 cut(s)	6, 244
RsaNI	GTAC	2 cut(s)	5, 243
RseI	CAYNNNNRTG	2 cut(s)	170, 276
SaqAI	TTAA	2 cut(s)	83, 428
SatI	GCNGC	1 cut(s)	214
Sau3AI	GATC	4 cut(s)	100, 324, 352, 410
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	478
SfaNI	GCATC	3 cut(s)	436, 457, 508
SmiMI	CAYNNNNRTG	2 cut(s)	170, 276
SnaBI	TACGTA	1 cut(s)	8
Sse9I	AATT	1 cut(s)	395
SsiI	CCGC	2 cut(s)	213, 406
SspMI	CTAG	3 cut(s)	105, 191, 512
StyD4I	CCNGG	1 cut(s)	476
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	2 cut(s)	57, 242
TaiI	ACGT	1 cut(s)	10
TasI	AATT	1 cut(s)	395
TatI	WGTACW	1 cut(s)	242
TauI	GCSGC	1 cut(s)	216
Tru1I	TTAA	2 cut(s)	83, 428
Tru9I	TTAA	2 cut(s)	83, 428
TscAI	CASTG	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	269
Tsp45I	GTSAC	1 cut(s)	269
TspRI	CASTG	1 cut(s)	144
XagI	CCTNNNNNAGG	1 cut(s)	336
XceI	RCATGY	1 cut(s)	279
XspI	CTAG	3 cut(s)	105, 191, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.