Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001147

Physical Location & Seq

Genomic Coordinates Forward (+)

66299512 .. 66301108

Gene Structure 1597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0532800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGCGACAGTTTGTTGATGACAAATTCAAAGGCCTTAGAATTGCTATAAAACCCAGACATATGTCTCATAGCATCATATCTCACTTCTTAATTGTTCGTTACGTCTTTCTAAAGACAATGGCTCATATCCAAAAGCTTGTCTCAGTTTTTTCACTTCAACTCCTGCTTGTTCTGTTTGCCTTGGACTCCACTACCTATGCACTGCAAGTTGGGTTCTACCGGAAAACCTGTCCAAATTTAGAGGCTATTGTCCATGCGACTACTTATAACTACATATCTGGGGCACCAACTCTTGCTGCTCCTTTGTTAAGAATGCATTTCCATGATTGTTTTGTTAGGGGTTGTGATGGTTCTGTGCTATTGAAATCAACAGCAAACAAACAAGCTGAGAAAGATGCAATCCCCAACCTAAGCTTAAGAGGGTTCCAAGTCATAGATGCTGTAAAATCTGCAGTAGAAAAGAAGTGCCCTGGTGTTGTTTCTTGTGCCGATATCTTGGCCCTGGTAGCTCGTGACGCAGTATTAATGCTTCATGGTCCATTTTGGGAAGTTCCTACAGGACGAAGAGATGGAAGAGTGTCAATAGCCTCGGAGGCCTTGACAAACTTACCACCTCCTTTTGCTAACATAGCTCAGCTCAAAGGAATGTTTGCTTCAAAGGGTCTAACTGTTAAAGACCTAGTGGTCCTATCAGGAGGACACACCATTGGGACATCTCACTGCTCATCATTCTCGAATCGTATATACAATTTCACTGGTAAAGGTGACACAGACCCCAAATTGGACCGGAATTACGTAGCTCAGTTGAAGATCAAATGTAAGCCGGGGGATGCCAACACACTTGTTGAGATGGACCCTGGAAGCTTCAAAACATTTGATGAAGATTACTACACTCTAGTGACCAAAAGAAGAGGACTTTTCCAATCTGATTCAGCTCTTCTTGATGATATGGAGACGAAAGCCTATGTGACAACCCAAGCCATCACTCATGGATTGACCTTTGCAAAAGATTTTGCTGCATCGATGGTGAAAATGGGTAACATTGGAGTCCTCACTGGAAAAAATGGTGAAATAAGGAAGCAATGTGCTTTTATTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

366

Amino Acids

40.29

Weight (kDa)

9.33

Isoelectric Point (pI)

27.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	90 - 326	3.5e-86	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630 AT1G27630
fragaria_vesca	FvH4_2g39390 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420 FvH4_6g48420
malus_domestica	MD04G1049900.v1.1 MD06G1050000.v1.1 MD08G1026200.v1.1
prunus_persica	Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1 Prupe.1G374900_v2.0.a1
pyrus_communis	pycom04g04390 pycom06g04230 pycom06g04240 pycom08g02030
rosa_chinensis	RchiOBHm_Chr2g0168341 RchiOBHm_Chr3g0451061 RchiOBHm_Chr6g0301611
rosa_laevigata	RLG00000011239 RLG00000021768 RLG00000025695
rosa_multiflora	Rmu_co8487951.1_g000001 Rmu_sc0000078.1_g000004 Rmu_sc0016462.1_g000004 Rmu_ssc0000452.1_g000012
rosa_roxburghii	Rroxscaffold_2G00083130 Rroxscaffold_7G00166600
rosa_rugosa	Rorug02G0532800 Rorug02G0532900 Rorug02G0533000 Rorug02G0533000 Rorug02G0630800 Rorug06G0307200 Rorug06G0307300
rosa_samantha	Rh2AG602100 Rh2BG615400 Rh2CG583100 Rh2DG625600 Rh3AG033200 Rh3BG033500 Rh3CG032200 Rh3DG033200 Rh6AG420100 Rh6BG426200 Rh6CG433100 Rh6DG419500
rosa_wichuraiana	Rw0G019830 Rw2G049980 Rw3G002440 Rw6G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	267
AasI	GACNNNNNNGTC	1 cut(s)	683
AccB1I	GGYRCC	1 cut(s)	283
AcsI	RAATTY	2 cut(s)	23, 235
AfiI	CCNNNNNNNGG	1 cut(s)	781
AflII	CTTAAG	1 cut(s)	415
AgsI	TTSAA	6 cut(s)	28, 158, 364, 657, 808, 868
AjnI	CCWGG	3 cut(s)	469, 501, 856
AleI	CACNNNNGTG	1 cut(s)	896
AluBI	AGCT	9 cut(s)	136, 386, 414, 509, 632, 637, 800, 864, 935
AluI	AGCT	9 cut(s)	136, 386, 414, 509, 632, 637, 800, 864, 935
Alw26I	GTCTC	3 cut(s)	69, 145, 947
AoxI	GGCC	3 cut(s)	31, 498, 594
ApeKI	GCWGC	2 cut(s)	296, 1016
ApoI	RAATTY	2 cut(s)	23, 235
AseI	ATTAAT	2 cut(s)	524, 1095
AspS9I	GGNCC	5 cut(s)	499, 536, 685, 784, 853
AsuC2I	CCSGG	1 cut(s)	825
AsuHPI	GGTGA	3 cut(s)	776, 1039, 1079
AvaII	GGWCC	4 cut(s)	536, 685, 784, 853
BaeGI	GKGCMC	2 cut(s)	286, 470
BanI	GGYRCC	1 cut(s)	283
BarI	GAAGNNNNNNTAC	2 cut(s)	513, 545
BauI	CACGAG	1 cut(s)	510
BbvI	GCAGC	2 cut(s)	283, 1003
BccI	CCATC	5 cut(s)	341, 563, 844, 989, 1018
BciT130I	CCWGG	3 cut(s)	471, 503, 858
BcnI	CCSGG	1 cut(s)	825
BcoDI	GTCTC	3 cut(s)	69, 145, 947
BfaI	CTAG	2 cut(s)	680, 896
BfmI	CTRYAG	2 cut(s)	450, 555
BfrI	CTTAAG	1 cut(s)	415
BglI	GCCNNNNNGGC	1 cut(s)	593
BisI	GCNGC	2 cut(s)	297, 1017
BlpI	GCTNAGC	1 cut(s)	633
BlsI	GCNGC	2 cut(s)	298, 1018
Bme1390I	CCNGG	4 cut(s)	471, 503, 825, 858
Bme18I	GGWCC	4 cut(s)	536, 685, 784, 853
BmgT120I	GGNCC	5 cut(s)	499, 536, 685, 784, 853
BmiI	GGNNCC	3 cut(s)	285, 425, 855
BmrFI	CCNGG	4 cut(s)	471, 503, 825, 858
BmsI	GCATC	5 cut(s)	81, 385, 427, 820, 1028
BoxI	GACNNNNGTC	1 cut(s)	61
Bpu10I	CCTNAGC	1 cut(s)	410
Bpu1102I	GCTNAGC	1 cut(s)	633
BpuMI	CCSGG	1 cut(s)	825
Bsa29I	ATCGAT	1 cut(s)	1022
BsaAI	YACGTR	1 cut(s)	796
BsaJI	CCNNGG	6 cut(s)	180, 469, 501, 588, 824, 856
BsaWI	WCCGGW	2 cut(s)	219, 786
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bsc4I	CCNNNNNNNGG	1 cut(s)	781
Bse1I	ACTGG	2 cut(s)	760, 1060
Bse3DI	GCAATG	1 cut(s)	1088
BseBI	CCWGG	3 cut(s)	471, 503, 858
BseCI	ATCGAT	1 cut(s)	1022
BseDI	CCNNGG	6 cut(s)	180, 469, 501, 588, 824, 856
BseGI	GGATG	1 cut(s)	835
BseLI	CCNNNNNNNGG	1 cut(s)	781
BseMI	GCAATG	1 cut(s)	1088
BseMII	CTCAG	4 cut(s)	156, 378, 647, 815
BseNI	ACTGG	2 cut(s)	760, 1060
BseSI	GKGCMC	2 cut(s)	286, 470
BseXI	GCAGC	2 cut(s)	283, 1003
BshFI	GGCC	3 cut(s)	33, 500, 596
BshNI	GGYRCC	1 cut(s)	283
BshVI	ATCGAT	1 cut(s)	1022
BsiSI	CCGG	3 cut(s)	220, 787, 824
BslFI	GGGAC	1 cut(s)	724
BslI	CCNNNNNNNGG	1 cut(s)	781
BsmAI	GTCTC	3 cut(s)	69, 145, 947
BsmBI	CGTCTC	1 cut(s)	947
BsmFI	GGGAC	1 cut(s)	724
BsmI	GAATGC	1 cut(s)	318
BsnI	GGCC	3 cut(s)	33, 500, 596
Bsp1286I	GDGCHC	2 cut(s)	286, 470
Bsp143I	GATC	1 cut(s)	810
Bsp1720I	GCTNAGC	1 cut(s)	633
BspANI	GGCC	3 cut(s)	33, 500, 596
BspCNI	CTCAG	4 cut(s)	155, 379, 646, 814
BspDI	ATCGAT	1 cut(s)	1022
BspLI	GGNNCC	3 cut(s)	285, 425, 855
BspMAI	CTGCAG	1 cut(s)	454
BspQI	GCTCTTC	1 cut(s)	942
BspT107I	GGYRCC	1 cut(s)	283
BspTI	CTTAAG	1 cut(s)	415
BsrDI	GCAATG	1 cut(s)	1088
BsrI	ACTGG	2 cut(s)	760, 1060
BssECI	CCNNGG	6 cut(s)	180, 469, 501, 588, 824, 856
BssMI	GATC	1 cut(s)	810
BssSI	CACGAG	1 cut(s)	510
BssT1I	CCWWGG	1 cut(s)	180
Bst2BI	CACGAG	1 cut(s)	510
Bst2UI	CCWGG	3 cut(s)	471, 503, 858
Bst4CI	ACNGT	2 cut(s)	9, 670
Bst6I	CTCTTC	4 cut(s)	559, 568, 904, 942
BstAFI	CTTAAG	1 cut(s)	415
BstBAI	YACGTR	1 cut(s)	796
BstDEI	CTNAG	6 cut(s)	35, 142, 387, 410, 633, 801
BstF5I	GGATG	1 cut(s)	835
BstKTI	GATC	1 cut(s)	813
BstMAI	GTCTC	3 cut(s)	69, 145, 947
BstMBI	GATC	1 cut(s)	810
BstMWI	GCNNNNNNNGC	4 cut(s)	506, 515, 593, 629
BstNI	CCWGG	3 cut(s)	471, 503, 858
BstPAI	GACNNNNGTC	1 cut(s)	61
BstSCI	CCNGG	4 cut(s)	469, 501, 823, 856
BstSFI	CTRYAG	2 cut(s)	450, 555
BstSLI	GKGCMC	2 cut(s)	286, 470
BstSNI	TACGTA	1 cut(s)	796
BstV1I	GCAGC	2 cut(s)	283, 1003
Bsu15I	ATCGAT	1 cut(s)	1022
BsuRI	GGCC	3 cut(s)	33, 500, 596
BsuTUI	ATCGAT	1 cut(s)	1022
BtsCI	GGATG	1 cut(s)	835
BtsI	GCAGTG	2 cut(s)	200, 718
BtsIMutI	CAGTG	4 cut(s)	200, 718, 753, 1053
Cfr13I	GGNCC	5 cut(s)	499, 536, 685, 784, 853
ClaI	ATCGAT	1 cut(s)	1022
CseI	GACGC	1 cut(s)	524
CviAII	CATG	4 cut(s)	254, 323, 533, 989
DdeI	CTNAG	6 cut(s)	35, 142, 387, 410, 633, 801
DpnI	GATC	1 cut(s)	812
DpnII	GATC	1 cut(s)	810
DrdI	GACNNNNNNGTC	1 cut(s)	683
DseDI	GACNNNNNNGTC	1 cut(s)	683
Eam1104I	CTCTTC	4 cut(s)	559, 568, 904, 942
EarI	CTCTTC	4 cut(s)	559, 568, 904, 942
Eco105I	TACGTA	1 cut(s)	796
Eco130I	CCWWGG	1 cut(s)	180
Eco147I	AGGCCT	2 cut(s)	33, 596
Eco32I	GATATC	1 cut(s)	493
Eco47I	GGWCC	4 cut(s)	536, 685, 784, 853
EcoRII	CCWGG	3 cut(s)	469, 501, 856
EcoRV	GATATC	1 cut(s)	493
EcoT14I	CCWWGG	1 cut(s)	180
EcoT22I	ATGCAT	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	180
Esp3I	CGTCTC	1 cut(s)	947
FaeI	CATG	4 cut(s)	257, 326, 536, 992
FaqI	GGGAC	1 cut(s)	724
FatI	CATG	4 cut(s)	253, 322, 532, 988
FauNDI	CATATG	1 cut(s)	60
Fnu4HI	GCNGC	2 cut(s)	297, 1017
FokI	GGATG	1 cut(s)	842
Fsp4HI	GCNGC	2 cut(s)	297, 1017
FspBI	CTAG	2 cut(s)	680, 896
GluI	GCNGC	2 cut(s)	297, 1017
HaeIII	GGCC	3 cut(s)	33, 500, 596
HapII	CCGG	3 cut(s)	220, 787, 824
HgaI	GACGC	1 cut(s)	524
Hin1II	CATG	4 cut(s)	257, 326, 536, 992
HindIII	AAGCTT	3 cut(s)	134, 412, 862
HinfI	GANTC	4 cut(s)	185, 736, 929, 1047
HpaII	CCGG	3 cut(s)	220, 787, 824
HphI	GGTGA	3 cut(s)	776, 1039, 1079
Hpy188I	TCNGA	2 cut(s)	592, 928
Hpy188III	TCNNGA	4 cut(s)	512, 693, 733, 941
HpyCH4III	ACNGT	2 cut(s)	9, 670
HpyCH4IV	ACGT	2 cut(s)	102, 795
HpyCH4V	TGCA	7 cut(s)	200, 205, 316, 398, 452, 1004, 1019
HpyF10VI	GCNNNNNNNGC	4 cut(s)	506, 515, 593, 629
HpyF3I	CTNAG	6 cut(s)	35, 142, 387, 410, 633, 801
HpySE526I	ACGT	2 cut(s)	102, 795
Hsp92II	CATG	4 cut(s)	257, 326, 536, 992
Kzo9I	GATC	1 cut(s)	810
LguI	GCTCTTC	1 cut(s)	942
LmnI	GCTCC	1 cut(s)	304
Lsp1109I	GCAGC	2 cut(s)	283, 1003
LweI	GCATC	5 cut(s)	81, 385, 427, 820, 1028
MaeI	CTAG	2 cut(s)	680, 896
MaeII	ACGT	2 cut(s)	102, 795
MaeIII	GTNAC	6 cut(s)	98, 512, 764, 898, 967, 1037
MalI	GATC	1 cut(s)	812
MboI	GATC	1 cut(s)	810
MboII	GAAGA	6 cut(s)	576, 585, 820, 893, 921, 929
MhlI	GDGCHC	2 cut(s)	286, 470
MluCI	AATT	8 cut(s)	23, 39, 90, 235, 748, 779, 790, 1096
MlyI	GAGTC	2 cut(s)	179, 1056
MnlI	CCTC	8 cut(s)	235, 413, 586, 598, 624, 689, 905, 1061
Mph1103I	ATGCAT	1 cut(s)	318
MseI	TTAA	6 cut(s)	89, 308, 416, 524, 672, 1095
MslI	CAYNNNNRTG	2 cut(s)	321, 896
MspCI	CTTAAG	1 cut(s)	415
MspI	CCGG	3 cut(s)	220, 787, 824
MspR9I	CCNGG	4 cut(s)	471, 503, 825, 858
Mva1269I	GAATGC	1 cut(s)	318
MvaI	CCWGG	3 cut(s)	471, 503, 858
MwoI	GCNNNNNNNGC	4 cut(s)	506, 515, 593, 629
NciI	CCSGG	1 cut(s)	825
NdeI	CATATG	1 cut(s)	60
NdeII	GATC	1 cut(s)	810
NlaIII	CATG	4 cut(s)	257, 326, 536, 992
NlaIV	GGNNCC	3 cut(s)	285, 425, 855
NmuCI	GTSAC	4 cut(s)	512, 764, 898, 967
NsiI	ATGCAT	1 cut(s)	318
OliI	CACNNNNGTG	1 cut(s)	896
PceI	AGGCCT	2 cut(s)	33, 596
PciSI	GCTCTTC	1 cut(s)	942
PctI	GAATGC	1 cut(s)	318
PfeI	GAWTC	2 cut(s)	736, 929
PkrI	GCNGC	2 cut(s)	298, 1018
PleI	GAGTC	2 cut(s)	179, 1055
PpsI	GAGTC	2 cut(s)	179, 1055
Ppu21I	YACGTR	1 cut(s)	796
PshAI	GACNNNNGTC	1 cut(s)	61
PshBI	ATTAAT	2 cut(s)	524, 1095
PsiI	TTATAA	1 cut(s)	267
Psp6I	CCWGG	3 cut(s)	469, 501, 856
PspGI	CCWGG	3 cut(s)	469, 501, 856
PspN4I	GGNNCC	3 cut(s)	285, 425, 855
PspPI	GGNCC	5 cut(s)	499, 536, 685, 784, 853
PstI	CTGCAG	1 cut(s)	454
RseI	CAYNNNNRTG	2 cut(s)	321, 896
SapI	GCTCTTC	1 cut(s)	942
SaqAI	TTAA	6 cut(s)	89, 308, 416, 524, 672, 1095
SatI	GCNGC	2 cut(s)	297, 1017
Sau3AI	GATC	1 cut(s)	810
Sau96I	GGNCC	5 cut(s)	499, 536, 685, 784, 853
SchI	GAGTC	2 cut(s)	179, 1056
ScrFI	CCNGG	4 cut(s)	471, 503, 825, 858
SduI	GDGCHC	2 cut(s)	286, 470
SfaNI	GCATC	5 cut(s)	81, 385, 427, 820, 1028
SfcI	CTRYAG	2 cut(s)	450, 555
SinI	GGWCC	4 cut(s)	536, 685, 784, 853
SmiMI	CAYNNNNRTG	2 cut(s)	321, 896
SmlI	CTYRAG	1 cut(s)	415
SmoI	CTYRAG	1 cut(s)	415
SnaBI	TACGTA	1 cut(s)	796
Sse9I	AATT	8 cut(s)	23, 39, 90, 235, 748, 779, 790, 1096
SseBI	AGGCCT	2 cut(s)	33, 596
SspMI	CTAG	2 cut(s)	680, 896
StuI	AGGCCT	2 cut(s)	33, 596
StyD4I	CCNGG	4 cut(s)	469, 501, 823, 856
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	2 cut(s)	9, 670
TaiI	ACGT	2 cut(s)	105, 798
TaqI	TCGA	2 cut(s)	734, 1022
TasI	AATT	8 cut(s)	23, 39, 90, 235, 748, 779, 790, 1096
TfiI	GAWTC	2 cut(s)	736, 929
Tru1I	TTAA	6 cut(s)	89, 308, 416, 524, 672, 1095
Tru9I	TTAA	6 cut(s)	89, 308, 416, 524, 672, 1095
TscAI	CASTG	4 cut(s)	207, 725, 760, 1060
TseFI	GTSAC	4 cut(s)	512, 764, 898, 967
TseI	GCWGC	2 cut(s)	296, 1016
Tsp45I	GTSAC	4 cut(s)	512, 764, 898, 967
TspDTI	ATGAA	2 cut(s)	521, 894
TspRI	CASTG	4 cut(s)	207, 725, 760, 1060
Vha464I	CTTAAG	1 cut(s)	415
VpaK11BI	GGWCC	4 cut(s)	536, 685, 784, 853
VspI	ATTAAT	2 cut(s)	524, 1095
XapI	RAATTY	2 cut(s)	23, 235
XspI	CTAG	2 cut(s)	680, 896
Zsp2I	ATGCAT	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.