AT1G28170

Belongs to the sulfotransferase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001120
Physical Location & Seq
Forward (+)
9841269 .. 9842435
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G28170.1

Sequence Viewer

Length: 981 bp
ATGGATGAGACCAAGATCCCAAAGAAACTGCAAAGCGATGACGAAGAAAACATAAGTTTGATTTCTTCACTTCCCTTTGACGTAGATTTCGACAGCACGAAGCTCTTCAAATACCAAGGATGTTGGTACGACGACAAAACTCTGCAAGGAGTCCTCAATTTTCAAAGAGGTTTCGAGCCACAAGACACCGATATAATTATTGCTTCGTTCCCCAAATCTGGCACTACTTGGCTCAAAGCTCTCACGGTAGCTCTCCTCGAGAGATCCAAACAGAAACACTCTTCTGATGATCATCCTCTTCTACTTGATAATCCTCATGGACTGGTACCATTCCTCGAGCTCAGGCTGTTCACTGAGACCTCGAAACCAGATCTGACCAGTATCTCATCGTCGCCGAGGTTATTTTCGACTCATGTGGCGTTCCAAACGCTGCGAGAGGCTCTCAAAAACTCTCCTTGTAAGATCGTTTACGTGTGGAGGAACGTGAAAGACGTACTGGTGTCGTTTTGGTATTTCAACAGCGCAAAACTAAAGATAGAAGAGGAGAGAAGCATTTTGGATTCAATGTTCGAGTCCTTTTGCAGAGGAGTTATCAATTACGGACCATCCTGGGAACATGTCTTGAACTATTGGAGAGCAAGCTTGGAAGACTCCAAGAATGTGCTTTTCTTGAAGTACGAGGAGTTAAAAACAGAACCTCGCGTGCAGCTGAAGAGACTTGCCGAGTTCTTGGATTGTCCTTTTACGGTGGAAGAAGAAGAGAGGGGATCAGTGGAAGAGATCTTGGACCTTTGCTCATTGCGTAACTTGAAGAATTTGGAGATCAACAAGACCGGAAAAACGCTTAGGGGGGCCGATCACAAGATTTTTTTTCGTAAAGGGGAAGTCGGTGACTCGAAGAATCATCTGACTCCTGAAATGGAGAAGATAATTGACATGATCACTGAGGAGAAATTTGAAGGTTCGGATTTGAAATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sulfotransfer_1

Protein Analysis

326

Amino Acids

37.81

Weight (kDa)

5.37

Isoelectric Point (pI)

43.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sulfotransfer_1 PF00685 62 - 322 3.1e-72 Sulfotransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 325
AccB1I GGYRCC 1 cut(s) 325
AccII CGCG 1 cut(s) 702
AclWI GGATC 3 cut(s) 10, 258, 775
AcsI RAATTY 3 cut(s) 814, 953, 974
AcuI CTGAAG 1 cut(s) 731
AfaI GTAC 4 cut(s) 128, 327, 495, 677
AfiI CCNNNNNNNGG 1 cut(s) 218
AflIII ACRYGT 2 cut(s) 471, 616
AgsI TTSAA 9 cut(s) 109, 164, 517, 564, 625, 673, 811, 959, 973
AjnI CCWGG 1 cut(s) 608
AloI GAACNNNNNNTCC 2 cut(s) 551, 583
AluBI AGCT 6 cut(s) 103, 239, 251, 340, 642, 709
AluI AGCT 6 cut(s) 103, 239, 251, 340, 642, 709
Alw21I GWGCWC 1 cut(s) 342
Alw26I GTCTC 3 cut(s) 2, 350, 709
AlwI GGATC 3 cut(s) 10, 258, 775
Ama87I CYCGRG 2 cut(s) 257, 335
AoxI GGCC 1 cut(s) 852
ApeKI GCWGC 2 cut(s) 430, 706
ApoI RAATTY 3 cut(s) 814, 953, 974
ArsI GACNNNNNNTTYG 2 cut(s) 71, 103
Asp700I GAANNNNTTC 1 cut(s) 104
Asp718I GGTACC 1 cut(s) 325
AspLEI GCGC 1 cut(s) 524
AspS9I GGNCC 3 cut(s) 602, 787, 852
AsuHPI GGTGA 1 cut(s) 902
AvaI CYCGRG 2 cut(s) 257, 335
AvaII GGWCC 2 cut(s) 602, 787
BanI GGYRCC 1 cut(s) 325
BanII GRGCYC 1 cut(s) 342
BbsI GAAGAC 1 cut(s) 654
Bbv12I GWGCWC 1 cut(s) 342
BbvI GCAGC 2 cut(s) 417, 718
BccI CCATC 1 cut(s) 613
BciT130I CCWGG 1 cut(s) 610
BclI TGATCA 2 cut(s) 289, 939
BcoDI GTCTC 3 cut(s) 2, 350, 709
BglII AGATCT 2 cut(s) 370, 780
BisI GCNGC 2 cut(s) 431, 707
BlsI GCNGC 2 cut(s) 432, 708
Bme1390I CCNGG 1 cut(s) 610
Bme18I GGWCC 2 cut(s) 602, 787
BmeT110I CYCGRG 2 cut(s) 257, 335
BmgT120I GGNCC 3 cut(s) 602, 787, 852
BmiI GGNNCC 2 cut(s) 327, 853
BmrFI CCNGG 1 cut(s) 610
BpiI GAAGAC 1 cut(s) 654
BplI GAGNNNNNCTC 2 cut(s) 426, 458
Bpu10I CCTNAGC 2 cut(s) 341, 845
BsaAI YACGTR 1 cut(s) 472
BsaBI GATNNNNATC 1 cut(s) 291
BsaI GGTCTC 2 cut(s) 2, 350
BsaJI CCNNGG 3 cut(s) 115, 395, 609
BsaWI WCCGGW 1 cut(s) 833
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse1I ACTGG 3 cut(s) 327, 378, 501
Bse3DI GCAATG 1 cut(s) 797
Bse8I GATNNNNATC 1 cut(s) 291
BseBI CCWGG 1 cut(s) 610
BseDI CCNNGG 3 cut(s) 115, 395, 609
BseGI GGATG 4 cut(s) 10, 125, 292, 605
BseJI GATNNNNATC 1 cut(s) 291
BseLI CCNNNNNNNGG 1 cut(s) 218
BseMI GCAATG 1 cut(s) 797
BseMII CTCAG 3 cut(s) 345, 355, 936
BseNI ACTGG 3 cut(s) 327, 378, 501
BseRI GAGGAG 5 cut(s) 245, 557, 600, 695, 962
BseXI GCAGC 2 cut(s) 417, 718
BsgI GTGCAG 1 cut(s) 725
Bsh1236I CGCG 1 cut(s) 702
BshFI GGCC 1 cut(s) 854
BshNI GGYRCC 1 cut(s) 325
BsiHKAI GWGCWC 1 cut(s) 342
BsiHKCI CYCGRG 2 cut(s) 257, 335
BsiSI CCGG 1 cut(s) 834
BslI CCNNNNNNNGG 1 cut(s) 218
BsmAI GTCTC 3 cut(s) 2, 350, 709
BsnI GGCC 1 cut(s) 854
Bso31I GGTCTC 2 cut(s) 2, 350
BsoBI CYCGRG 2 cut(s) 257, 335
Bsp1286I GDGCHC 1 cut(s) 342
BspANI GGCC 1 cut(s) 854
BspCNI CTCAG 3 cut(s) 346, 354, 937
BspFNI CGCG 1 cut(s) 702
BspLI GGNNCC 2 cut(s) 327, 853
BspPI GGATC 3 cut(s) 10, 258, 775
BspQI GCTCTTC 1 cut(s) 110
BspT107I GGYRCC 1 cut(s) 325
BspTNI GGTCTC 2 cut(s) 2, 350
BsrDI GCAATG 1 cut(s) 797
BsrI ACTGG 3 cut(s) 327, 378, 501
BssECI CCNNGG 3 cut(s) 115, 395, 609
BssT1I CCWWGG 1 cut(s) 115
Bst2UI CCWGG 1 cut(s) 610
Bst4CI ACNGT 2 cut(s) 247, 748
Bst6I CTCTTC 7 cut(s) 110, 286, 303, 534, 707, 753, 771
BstBAI YACGTR 1 cut(s) 472
BstC8I GCNNGC 2 cut(s) 640, 704
BstDEI CTNAG 4 cut(s) 341, 354, 845, 945
BstF5I GGATG 4 cut(s) 10, 125, 292, 605
BstFNI CGCG 1 cut(s) 702
BstHHI GCGC 1 cut(s) 524
BstMAI GTCTC 3 cut(s) 2, 350, 709
BstNI CCWGG 1 cut(s) 610
BstNSI RCATGY 1 cut(s) 620
BstSCI CCNGG 1 cut(s) 608
BstUI CGCG 1 cut(s) 702
BstV1I GCAGC 2 cut(s) 417, 718
BstV2I GAAGAC 1 cut(s) 654
BstX2I RGATCY 4 cut(s) 15, 263, 370, 780
BstYI RGATCY 4 cut(s) 15, 263, 370, 780
BsuRI GGCC 1 cut(s) 854
BtgZI GCGATG 1 cut(s) 51
BtsCI GGATG 4 cut(s) 10, 125, 292, 605
BtsIMutI CAGTG 3 cut(s) 351, 777, 942
Cac8I GCNNGC 2 cut(s) 640, 704
CfoI GCGC 1 cut(s) 524
Cfr13I GGNCC 3 cut(s) 602, 787, 852
Csp6I GTAC 4 cut(s) 127, 326, 494, 676
CviAII CATG 4 cut(s) 317, 413, 617, 937
CviQI GTAC 4 cut(s) 127, 326, 494, 676
DdeI CTNAG 4 cut(s) 341, 354, 845, 945
Eam1104I CTCTTC 7 cut(s) 110, 286, 303, 534, 707, 753, 771
EarI CTCTTC 7 cut(s) 110, 286, 303, 534, 707, 753, 771
Ecl136II GAGCTC 1 cut(s) 340
Eco130I CCWWGG 1 cut(s) 115
Eco24I GRGCYC 1 cut(s) 342
Eco31I GGTCTC 2 cut(s) 2, 350
Eco47I GGWCC 2 cut(s) 602, 787
Eco53kI GAGCTC 1 cut(s) 340
Eco57I CTGAAG 1 cut(s) 731
Eco88I CYCGRG 2 cut(s) 257, 335
EcoICRI GAGCTC 1 cut(s) 340
EcoRII CCWGG 1 cut(s) 608
EcoT14I CCWWGG 1 cut(s) 115
EcoT38I GRGCYC 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 115
FaeI CATG 4 cut(s) 320, 416, 620, 940
FaiI YATR 6 cut(s) 53, 194, 318, 414, 618, 938
FatI CATG 4 cut(s) 316, 412, 616, 936
FbaI TGATCA 2 cut(s) 289, 939
Fnu4HI GCNGC 2 cut(s) 431, 707
FokI GGATG 4 cut(s) 17, 132, 279, 592
FriOI GRGCYC 1 cut(s) 342
Fsp4HI GCNGC 2 cut(s) 431, 707
GlaI GCGC 1 cut(s) 523
GluI GCNGC 2 cut(s) 431, 707
HaeIII GGCC 1 cut(s) 854
HapII CCGG 1 cut(s) 834
HhaI GCGC 1 cut(s) 524
Hin1II CATG 4 cut(s) 320, 416, 620, 940
Hin6I GCGC 1 cut(s) 522
HinP1I GCGC 1 cut(s) 522
HindIII AAGCTT 1 cut(s) 640
HinfI GANTC 8 cut(s) 150, 409, 560, 572, 650, 893, 901, 910
HpaII CCGG 1 cut(s) 834
HphI GGTGA 1 cut(s) 902
Hpy166II GTNNAC 2 cut(s) 351, 469
Hpy188I TCNGA 5 cut(s) 286, 375, 909, 967, 980
Hpy188III TCNNGA 4 cut(s) 259, 622, 670, 914
Hpy8I GTNNAC 2 cut(s) 351, 469
Hpy99I CGWCG 2 cut(s) 134, 394
HpyAV CCTTC 1 cut(s) 953
HpyCH4III ACNGT 2 cut(s) 247, 748
HpyCH4IV ACGT 4 cut(s) 81, 471, 483, 492
HpyCH4V TGCA 4 cut(s) 31, 145, 582, 706
HpyF3I CTNAG 4 cut(s) 341, 354, 845, 945
HpySE526I ACGT 4 cut(s) 81, 471, 483, 492
Hsp92II CATG 4 cut(s) 320, 416, 620, 940
HspAI GCGC 1 cut(s) 522
KpnI GGTACC 1 cut(s) 329
Ksp22I TGATCA 2 cut(s) 289, 939
LguI GCTCTTC 1 cut(s) 110
Lsp1109I GCAGC 2 cut(s) 417, 718
MaeII ACGT 4 cut(s) 81, 471, 483, 492
MaeIII GTNAC 2 cut(s) 803, 890
MflI RGATCY 4 cut(s) 15, 263, 370, 780
MhlI GDGCHC 1 cut(s) 342
MluCI AATT 7 cut(s) 157, 195, 595, 814, 930, 953, 974
MlyI GAGTC 6 cut(s) 159, 403, 581, 644, 887, 904
MroXI GAANNNNTTC 1 cut(s) 104
MseI TTAA 1 cut(s) 686
MspA1I CMGCKG 1 cut(s) 709
MspI CCGG 1 cut(s) 834
MspR9I CCNGG 1 cut(s) 610
MvaI CCWGG 1 cut(s) 610
MvnI CGCG 1 cut(s) 702
NlaIII CATG 4 cut(s) 320, 416, 620, 940
NlaIV GGNNCC 2 cut(s) 327, 853
NmeAIII GCCGAG 2 cut(s) 420, 748
NmuCI GTSAC 1 cut(s) 890
NspI RCATGY 1 cut(s) 620
PaeR7I CTCGAG 2 cut(s) 257, 335
PciI ACATGT 1 cut(s) 616
PciSI GCTCTTC 1 cut(s) 110
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 489
PdmI GAANNNNTTC 1 cut(s) 104
PfeI GAWTC 2 cut(s) 560, 901
PkrI GCNGC 2 cut(s) 432, 708
PleI GAGTC 6 cut(s) 158, 403, 580, 644, 887, 904
PpsI GAGTC 6 cut(s) 158, 403, 580, 644, 887, 904
Ppu21I YACGTR 1 cut(s) 472
PscI ACATGT 1 cut(s) 616
Psp124BI GAGCTC 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 608
PspGI CCWGG 1 cut(s) 608
PspN4I GGNNCC 2 cut(s) 327, 853
PspPI GGNCC 3 cut(s) 602, 787, 852
PspXI VCTCGAGB 1 cut(s) 335
PsuI RGATCY 4 cut(s) 15, 263, 370, 780
PvuII CAGCTG 1 cut(s) 709
RsaI GTAC 4 cut(s) 128, 327, 495, 677
RsaNI GTAC 4 cut(s) 127, 326, 494, 676
SacI GAGCTC 1 cut(s) 342
SapI GCTCTTC 1 cut(s) 110
SaqAI TTAA 1 cut(s) 686
SatI GCNGC 2 cut(s) 431, 707
Sau96I GGNCC 3 cut(s) 602, 787, 852
SchI GAGTC 6 cut(s) 159, 403, 581, 644, 887, 904
ScrFI CCNGG 1 cut(s) 610
SduI GDGCHC 1 cut(s) 342
Sfr274I CTCGAG 2 cut(s) 257, 335
SinI GGWCC 2 cut(s) 602, 787
SlaI CTCGAG 2 cut(s) 257, 335
SmlI CTYRAG 2 cut(s) 257, 335
SmoI CTYRAG 2 cut(s) 257, 335
Sse9I AATT 7 cut(s) 157, 195, 595, 814, 930, 953, 974
SstI GAGCTC 1 cut(s) 342
StyD4I CCNGG 1 cut(s) 608
StyI CCWWGG 1 cut(s) 115
TaaI ACNGT 2 cut(s) 247, 748
TaiI ACGT 4 cut(s) 84, 474, 486, 495
TaqI TCGA 8 cut(s) 90, 174, 258, 336, 362, 407, 570, 896
TasI AATT 7 cut(s) 157, 195, 595, 814, 930, 953, 974
TfiI GAWTC 2 cut(s) 560, 901
Tru1I TTAA 1 cut(s) 686
Tru9I TTAA 1 cut(s) 686
TscAI CASTG 3 cut(s) 358, 777, 949
TseFI GTSAC 1 cut(s) 890
TseI GCWGC 2 cut(s) 430, 706
Tsp45I GTSAC 1 cut(s) 890
TspGWI ACGGA 1 cut(s) 615
TspRI CASTG 3 cut(s) 358, 777, 949
VpaK11BI GGWCC 2 cut(s) 602, 787
XapI RAATTY 3 cut(s) 814, 953, 974
XceI RCATGY 1 cut(s) 620
XhoI CTCGAG 2 cut(s) 257, 335
XmnI GAANNNNTTC 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.