Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001120

Physical Location & Seq

Genomic Coordinates Forward (+)

3959462 .. 3960103

Gene Structure 642 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1055700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGAAAACACCTCAACCTCCTCCCCCTGTTGTTTCCCGCTACTGGCAAGAAAATGAACTCAGCCAAGAAGACAAAGACCTTATATCCTCTCTACCTACAGAAAAAGCTTGGGTTGCAAATTACCTTCACAAGTACCAAGGTTTTTGGCAGGCAACTACGCACATGCAGGGAGCTTTGGCATGCCAGAAACACTTCCAAGCCCTAGAATCTGATATCCTTCTTGTAACCACTCCCAAATCAGGCACCACTTGGCTCAAGGCAATTTTGTTTGCCTTAGTGAAACGAGAGCACTATCTGGACCCTCAGCGACACCCTTTGCTCACAGAAAACCCTCATGTTCTTGTGCCGTTTTTGGAGATCGATGTCTACGCTGACATACAGGTACTTCCTGACCTCTCCTCCCTGGCCCCTCCGAGGCTCTTTTCGACTCATTTACCGTATTCTTCTCTGCCGGATTCTGTCAAACATTCCGGTTGCAATGTTGTTTACTTGTGTAGAGATCCTAAAGATGCGTTTGTTTCACTTTGGCACTTTGCAAACAAACTACGACCCGTGGGTAGTGGAACCATTTCACTTGACGATGCGTTCGATAAGTTCTGCCGGGGAGTGAGTGTGTCGGGACCTTTTGGGATCACGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

214

Amino Acids

24.03

Weight (kDa)

6.49

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	70 - 209	1.6e-35	Sulfotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28170 AT2G03760 AT2G27570 AT3G45070 AT3G45070 AT3G45070 AT3G45080 AT5G43690
fragaria_vesca	FvH4_4g29330 FvH4_4g29331 FvH4_4g29332 FvH4_4g29333 FvH4_4g29333 FvH4_4g29333 FvH4_4g29333 FvH4_4g29333 FvH4_4g29751
malus_domestica	MD16G1055600.v1.1 MD16G1055700.v1.1 MD16G1055800.v1.1 MD16G1056100.v1.1
prunus_persica	Prupe.1G293200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0437381 RchiOBHm_Chr4g0437391 RchiOBHm_Chr7g0233341
rosa_laevigata	RLG00000006442 RLG00000013880
rosa_multiflora	Rmu_sc0004759.1_g000009 Rmu_sc0004759.1_g000010 Rmu_sc0010228.1_g000003 Rmu_sc0010228.1_g000005
rosa_roxburghii	Rroxscaffold_3G00227360 Rroxscaffold_5G00378530 Rroxscaffold_5G00378560 Rroxscaffold_5G00378630
rosa_rugosa	Rorug04G0300400 Rorug04G0300500 Rorug04G0300600 Rorug04G0301000
rosa_samantha	Rh4AG355300 Rh4BG365000 Rh4BG365100 Rh4BG365400 Rh4BG365500 Rh4CG379200 Rh4CG379300 Rh4CG379600 Rh4CG379700 Rh4DG359000 Rh4DG359100 Rh4DG359300 Rh5DG503800 Rh7CG455200
rosa_wichuraiana	Rw0G022450 Rw4G031140 Rw4G031170 Rw4G031180 Rw7G035860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	242
AccI	GTMKAC	1 cut(s)	366
AciI	CCGC	1 cut(s)	37
AclWI	GGATC	2 cut(s)	494, 638
AfaI	GTAC	3 cut(s)	134, 384, 638
AfiI	CCNNNNNNNGG	3 cut(s)	42, 239, 414
AjnI	CCWGG	1 cut(s)	402
AluBI	AGCT	2 cut(s)	107, 173
AluI	AGCT	2 cut(s)	107, 173
Alw21I	GWGCWC	1 cut(s)	291
AlwI	GGATC	2 cut(s)	494, 638
AoxI	GGCC	1 cut(s)	405
ArsI	GACNNNNNNTTYG	2 cut(s)	569, 601
Asp700I	GAANNNNTTC	2 cut(s)	191, 568
AspS9I	GGNCC	3 cut(s)	298, 406, 620
AsuC2I	CCSGG	1 cut(s)	602
AvaII	GGWCC	2 cut(s)	298, 620
BanI	GGYRCC	1 cut(s)	242
BbsI	GAAGAC	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	291
BbvCI	CCTCAGC	1 cut(s)	303
BceAI	ACGGC	1 cut(s)	331
BciT130I	CCWGG	1 cut(s)	404
BcnI	CCSGG	1 cut(s)	602
BfaI	CTAG	2 cut(s)	203, 640
BfmI	CTRYAG	1 cut(s)	96
Bme1390I	CCNGG	2 cut(s)	404, 602
Bme18I	GGWCC	2 cut(s)	298, 620
BmgT120I	GGNCC	3 cut(s)	298, 406, 620
BmiI	GGNNCC	5 cut(s)	244, 300, 408, 565, 621
BmrFI	CCNGG	2 cut(s)	404, 602
BmsI	GCATC	2 cut(s)	499, 571
BpiI	GAAGAC	1 cut(s)	75
Bpu10I	CCTNAGC	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	602
Bsa29I	ATCGAT	1 cut(s)	360
BsaAI	YACGTR	1 cut(s)	636
BsaJI	CCNNGG	5 cut(s)	136, 402, 413, 552, 601
BsaWI	WCCGGW	1 cut(s)	470
BsaXI	ACNNNNNCTCC	4 cut(s)	383, 413, 597, 627
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 239, 414
Bse1I	ACTGG	1 cut(s)	47
Bse3DI	GCAATG	1 cut(s)	484
BseBI	CCWGG	1 cut(s)	404
BseCI	ATCGAT	1 cut(s)	360
BseDI	CCNNGG	5 cut(s)	136, 402, 413, 552, 601
BseLI	CCNNNNNNNGG	3 cut(s)	42, 239, 414
BseMI	GCAATG	1 cut(s)	484
BseMII	CTCAG	2 cut(s)	73, 317
BseNI	ACTGG	1 cut(s)	47
BseRI	GAGGAG	2 cut(s)	9, 388
BshFI	GGCC	1 cut(s)	407
BshNI	GGYRCC	1 cut(s)	242
BshVI	ATCGAT	1 cut(s)	360
BsiHKAI	GWGCWC	1 cut(s)	291
BsiSI	CCGG	3 cut(s)	452, 471, 601
BslFI	GGGAC	1 cut(s)	633
BslI	CCNNNNNNNGG	3 cut(s)	42, 239, 414
BsmFI	GGGAC	1 cut(s)	633
BsnI	GGCC	1 cut(s)	407
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	3 cut(s)	357, 499, 630
BspACI	CCGC	1 cut(s)	37
BspANI	GGCC	1 cut(s)	407
BspCNI	CTCAG	2 cut(s)	72, 316
BspDI	ATCGAT	1 cut(s)	360
BspLI	GGNNCC	5 cut(s)	244, 300, 408, 565, 621
BspPI	GGATC	2 cut(s)	494, 638
BspT107I	GGYRCC	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	484
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	5 cut(s)	136, 402, 413, 552, 601
BssMI	GATC	3 cut(s)	357, 499, 630
BssT1I	CCWWGG	1 cut(s)	136
Bst2UI	CCWGG	1 cut(s)	404
Bst4CI	ACNGT	1 cut(s)	438
BstBAI	YACGTR	1 cut(s)	636
BstC8I	GCNNGC	2 cut(s)	150, 181
BstDEI	CTNAG	3 cut(s)	59, 274, 303
BstDSI	CCRYGG	1 cut(s)	552
BstKTI	GATC	3 cut(s)	360, 502, 633
BstMBI	GATC	3 cut(s)	357, 499, 630
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	1 cut(s)	404
BstNSI	RCATGY	2 cut(s)	166, 183
BstSCI	CCNGG	2 cut(s)	402, 600
BstSFI	CTRYAG	1 cut(s)	96
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	499
Bsu15I	ATCGAT	1 cut(s)	360
BsuRI	GGCC	1 cut(s)	407
BsuTUI	ATCGAT	1 cut(s)	360
BtgI	CCRYGG	1 cut(s)	552
Cac8I	GCNNGC	2 cut(s)	150, 181
Cfr13I	GGNCC	3 cut(s)	298, 406, 620
ClaI	ATCGAT	1 cut(s)	360
Csp6I	GTAC	3 cut(s)	133, 383, 637
CviAII	CATG	3 cut(s)	163, 180, 335
CviJI	RGCY	7 cut(s)	63, 107, 173, 200, 253, 407, 418
CviKI_1	RGCY	7 cut(s)	63, 107, 173, 200, 253, 407, 418
CviQI	GTAC	3 cut(s)	133, 383, 637
DdeI	CTNAG	3 cut(s)	59, 274, 303
DpnI	GATC	3 cut(s)	359, 501, 632
DpnII	GATC	3 cut(s)	357, 499, 630
Eco130I	CCWWGG	1 cut(s)	136
Eco32I	GATATC	1 cut(s)	214
Eco47I	GGWCC	2 cut(s)	298, 620
EcoO109I	RGGNCCY	1 cut(s)	620
EcoRII	CCWGG	1 cut(s)	402
EcoRV	GATATC	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	136
FaeI	CATG	3 cut(s)	166, 183, 338
FaiI	YATR	5 cut(s)	83, 164, 181, 336, 377
FaqI	GGGAC	1 cut(s)	633
FatI	CATG	3 cut(s)	162, 179, 334
FauI	CCCGC	1 cut(s)	44
FblI	GTMKAC	1 cut(s)	366
FspBI	CTAG	2 cut(s)	203, 640
HaeIII	GGCC	1 cut(s)	407
HapII	CCGG	3 cut(s)	452, 471, 601
Hin1II	CATG	3 cut(s)	166, 183, 338
HindIII	AAGCTT	1 cut(s)	105
HinfI	GANTC	3 cut(s)	206, 427, 455
HpaII	CCGG	3 cut(s)	452, 471, 601
Hpy166II	GTNNAC	2 cut(s)	367, 487
Hpy188I	TCNGA	2 cut(s)	211, 414
Hpy188III	TCNNGA	3 cut(s)	296, 389, 618
Hpy8I	GTNNAC	2 cut(s)	367, 487
HpyAV	CCTTC	2 cut(s)	134, 227
HpyCH4III	ACNGT	1 cut(s)	438
HpyCH4IV	ACGT	1 cut(s)	635
HpyCH4V	TGCA	4 cut(s)	116, 166, 477, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	3 cut(s)	59, 274, 303
HpySE526I	ACGT	1 cut(s)	635
Hsp92II	CATG	3 cut(s)	166, 183, 338
Kzo9I	GATC	3 cut(s)	357, 499, 630
LmnI	GCTCC	1 cut(s)	170
LweI	GCATC	2 cut(s)	499, 571
MaeI	CTAG	2 cut(s)	203, 640
MaeII	ACGT	1 cut(s)	635
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	3 cut(s)	359, 501, 632
MboI	GATC	3 cut(s)	357, 499, 630
MboII	GAAGA	2 cut(s)	80, 435
MflI	RGATCY	1 cut(s)	499
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	2 cut(s)	118, 261
MlyI	GAGTC	1 cut(s)	421
MroXI	GAANNNNTTC	2 cut(s)	191, 568
MspI	CCGG	3 cut(s)	452, 471, 601
MspR9I	CCNGG	2 cut(s)	404, 602
MvaI	CCWGG	1 cut(s)	404
MwoI	GCNNNNNNNGC	1 cut(s)	113
NciI	CCSGG	1 cut(s)	602
NdeII	GATC	3 cut(s)	357, 499, 630
NlaIII	CATG	3 cut(s)	166, 183, 338
NlaIV	GGNNCC	5 cut(s)	244, 300, 408, 565, 621
NspI	RCATGY	2 cut(s)	166, 183
PaeI	GCATGC	1 cut(s)	183
PcsI	WCGNNNNNNNCGW	1 cut(s)	585
PdmI	GAANNNNTTC	2 cut(s)	191, 568
PfeI	GAWTC	2 cut(s)	206, 455
PleI	GAGTC	1 cut(s)	421
PpsI	GAGTC	1 cut(s)	421
Ppu21I	YACGTR	1 cut(s)	636
PpuMI	RGGWCCY	1 cut(s)	620
Psp5II	RGGWCCY	1 cut(s)	620
Psp6I	CCWGG	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	402
PspN4I	GGNNCC	5 cut(s)	244, 300, 408, 565, 621
PspPI	GGNCC	3 cut(s)	298, 406, 620
PspPPI	RGGWCCY	1 cut(s)	620
PsuI	RGATCY	1 cut(s)	499
RsaI	GTAC	3 cut(s)	134, 384, 638
RsaNI	GTAC	3 cut(s)	133, 383, 637
Sau3AI	GATC	3 cut(s)	357, 499, 630
Sau96I	GGNCC	3 cut(s)	298, 406, 620
SchI	GAGTC	1 cut(s)	421
ScrFI	CCNGG	2 cut(s)	404, 602
SduI	GDGCHC	1 cut(s)	291
SfaNI	GCATC	2 cut(s)	499, 571
SfcI	CTRYAG	1 cut(s)	96
SinI	GGWCC	2 cut(s)	298, 620
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SphI	GCATGC	1 cut(s)	183
Sse9I	AATT	2 cut(s)	118, 261
SsiI	CCGC	1 cut(s)	37
SspMI	CTAG	2 cut(s)	203, 640
StyD4I	CCNGG	2 cut(s)	402, 600
StyI	CCWWGG	1 cut(s)	136
TaaI	ACNGT	1 cut(s)	438
TaiI	ACGT	1 cut(s)	638
TaqI	TCGA	3 cut(s)	360, 425, 588
TasI	AATT	2 cut(s)	118, 261
TfiI	GAWTC	2 cut(s)	206, 455
TspDTI	ATGAA	2 cut(s)	17, 69
VpaK11BI	GGWCC	2 cut(s)	298, 620
XceI	RCATGY	2 cut(s)	166, 183
XmiI	GTMKAC	1 cut(s)	366
XmnI	GAANNNNTTC	2 cut(s)	191, 568
XspI	CTAG	2 cut(s)	203, 640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.