Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001120

Physical Location & Seq

Genomic Coordinates Forward (+)

29511433 .. 29513825

Gene Structure 2393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g29332.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGTCACTACCTCAAATTCCTTCTTCTCTTCCTCAACAGTACGATTACTTCCAACAGATTGAGCTCAGCCAAGAAATCAGAGACCTAATATCCACGCTCCCTGCGGAGGAAGGATTGATTTCAGGTCATTTACATCAGTACCAGGGCTTTTGGTACCCTACTATGCGTATCCCAAGAATTTTAGCCACCCAAAAACACTTCCAAGCTCATGATACTGATATCCTTCTTGCTACTACTCCCAAATCAGGCACCACTTGGCTCAAGGCAATTCTGTTTGCGCTAGTAAAGCGAGTGCACTATCATCCGCACCCTCAAAACATAGACCACCCTTTGCTCACAAACAACTCTCATCCTCTTGTGCCCTTCTTGGAGAATAAGCAGCAGTCCGGTGAGAATCAGATTCCTGACGCTAACTCCTATGCCCCTCCCAGGCTCTTTTCGACTCACTTACCACTAGCGCATTTGCCACAATCTGTTAAAGACTCTGCTTGCAAGGTTGTCTATCTGTGTAGAAACCCTAAGGACATAGTAGTTTCACTTTGGCACTTCACGAACAGAGTGAGACACAAGAGTCTGGAAACTAATTCACTTGAAAAGGTATTCCAATACTTCTGCAGGGGAATGAATGGGTATGGACCCTTCTGGGATCATGTACTGGGCTATTGGAAGGAGAGCTTGGAAAGGCCTGAAACAGTGTTCTTCGTCAAATATGAGGAAATGAAAGAGAAACCTGGTCTGCACTTGAGGAGGCTAGCTGAGTTCTTGGGGTGCCCATTTTCTCCGGAAGAAGAAGCACAGGGAGTGGTGGACAATGTCTTGAAGCTGTGTAGTTTTGAGACTTTGAGCAATTTGGATGTGAACAAAAACGGGAGATTATCGACGGGGGTGGAGAATAGTGTATACTTTAGGCAAGGGAAGGCTGGAGACTGGAAGAATTATTTGACAGCTGAGATGGTTGAACAGCTAGACCGTATCACTGAAGAAAAGTTGCAAGGTTCTGGATTGAAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

338

Amino Acids

38.83

Weight (kDa)

6.73

Isoelectric Point (pI)

44.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	71 - 334	5.9e-77	Sulfotransferase domain
Sulfotransfer_3	PF13469	165 - 260	2.1e-06	Sulfotransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28170 AT2G03760 AT2G27570 AT3G45070 AT3G45070 AT3G45070 AT3G45080 AT5G43690
fragaria_vesca	FvH4_4g29330 FvH4_4g29331 FvH4_4g29332 FvH4_4g29333 FvH4_4g29333 FvH4_4g29333 FvH4_4g29333 FvH4_4g29333 FvH4_4g29751
malus_domestica	MD16G1055600.v1.1 MD16G1055700.v1.1 MD16G1055800.v1.1 MD16G1056100.v1.1
prunus_persica	Prupe.1G293200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0437381 RchiOBHm_Chr4g0437391 RchiOBHm_Chr7g0233341
rosa_laevigata	RLG00000006442 RLG00000013880
rosa_multiflora	Rmu_sc0004759.1_g000009 Rmu_sc0004759.1_g000010 Rmu_sc0010228.1_g000003 Rmu_sc0010228.1_g000005
rosa_roxburghii	Rroxscaffold_3G00227360 Rroxscaffold_5G00378530 Rroxscaffold_5G00378560 Rroxscaffold_5G00378630
rosa_rugosa	Rorug04G0300400 Rorug04G0300500 Rorug04G0300600 Rorug04G0301000
rosa_samantha	Rh4AG355300 Rh4BG365000 Rh4BG365100 Rh4BG365400 Rh4BG365500 Rh4CG379200 Rh4CG379300 Rh4CG379600 Rh4CG379700 Rh4DG359000 Rh4DG359100 Rh4DG359300 Rh5DG503800 Rh7CG455200
rosa_wichuraiana	Rw0G022450 Rw4G031140 Rw4G031170 Rw4G031180 Rw7G035860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	570
Acc65I	GGTACC	1 cut(s)	153
AccB1I	GGYRCC	3 cut(s)	153, 248, 768
AccI	GTMKAC	1 cut(s)	900
AccIII	TCCGGA	1 cut(s)	781
AciI	CCGC	2 cut(s)	104, 305
AclWI	GGATC	1 cut(s)	654
AcsI	RAATTY	3 cut(s)	15, 177, 1007
AcuI	CTGAAG	1 cut(s)	999
AfaI	GTAC	4 cut(s)	41, 140, 155, 654
AfiI	CCNNNNNNNGG	3 cut(s)	106, 245, 429
AgsI	TTSAA	4 cut(s)	593, 820, 959, 1006
AjnI	CCWGG	3 cut(s)	141, 428, 730
AjuI	GAANNNNNNNTTGG	2 cut(s)	659, 691
AluBI	AGCT	7 cut(s)	64, 206, 675, 755, 823, 947, 964
AluI	AGCT	7 cut(s)	64, 206, 675, 755, 823, 947, 964
Alw21I	GWGCWC	2 cut(s)	66, 297
Alw26I	GTCTC	4 cut(s)	75, 556, 830, 918
Alw44I	GTGCAC	1 cut(s)	293
AlwI	GGATC	1 cut(s)	654
Aor13HI	TCCGGA	1 cut(s)	781
AoxI	GGCC	1 cut(s)	683
ApaLI	GTGCAC	1 cut(s)	293
ApeKI	GCWGC	1 cut(s)	379
ApoI	RAATTY	3 cut(s)	15, 177, 1007
Asp718I	GGTACC	1 cut(s)	153
AspLEI	GCGC	2 cut(s)	280, 460
AspS9I	GGNCC	1 cut(s)	635
AsuHPI	GGTGA	1 cut(s)	401
AsuNHI	GCTAGC	1 cut(s)	751
AvaII	GGWCC	1 cut(s)	635
AxyI	CCTNAGG	1 cut(s)	519
BaeGI	GKGCMC	3 cut(s)	297, 363, 773
BaeI	ACNNNNGTAYC	2 cut(s)	122, 155
BanI	GGYRCC	3 cut(s)	153, 248, 768
BanII	GRGCYC	1 cut(s)	66
BarI	GAAGNNNNNNTAC	4 cut(s)	32, 64, 623, 655
Bbv12I	GWGCWC	2 cut(s)	66, 297
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	1 cut(s)	946
BciT130I	CCWGG	3 cut(s)	143, 430, 732
BciVI	GTATCC	1 cut(s)	179
BcoDI	GTCTC	4 cut(s)	75, 556, 830, 918
BfaI	CTAG	4 cut(s)	281, 455, 752, 965
BfmI	CTRYAG	1 cut(s)	613
BfuI	GTATCC	1 cut(s)	179
BisI	GCNGC	1 cut(s)	380
BlpI	GCTNAGC	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	381
Bme1390I	CCNGG	3 cut(s)	143, 430, 732
Bme18I	GGWCC	1 cut(s)	635
BmgT120I	GGNCC	1 cut(s)	635
BmiI	GGNNCC	4 cut(s)	155, 250, 637, 770
BmrFI	CCNGG	3 cut(s)	143, 430, 732
BmrI	ACTGGG	1 cut(s)	665
BmtI	GCTAGC	1 cut(s)	755
BmuI	ACTGGG	1 cut(s)	665
BpmI	CTGGAG	1 cut(s)	942
Bpu1102I	GCTNAGC	1 cut(s)	65
BpuEI	CTTGAG	2 cut(s)	245, 763
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	142, 428
BsaWI	WCCGGW	2 cut(s)	386, 781
BsaXI	ACNNNNNCTCC	2 cut(s)	398, 428
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 245, 429
Bse1I	ACTGG	2 cut(s)	660, 932
Bse21I	CCTNAGG	1 cut(s)	519
BseAI	TCCGGA	1 cut(s)	781
BseBI	CCWGG	3 cut(s)	143, 430, 732
BseDI	CCNNGG	2 cut(s)	142, 428
BseGI	GGATG	3 cut(s)	301, 349, 859
BseLI	CCNNNNNNNGG	3 cut(s)	106, 245, 429
BseMII	CTCAG	3 cut(s)	79, 747, 939
BseNI	ACTGG	2 cut(s)	660, 932
BseRI	GAGGAG	1 cut(s)	760
BseSI	GKGCMC	3 cut(s)	297, 363, 773
BseXI	GCAGC	1 cut(s)	391
BsgI	GTGCAG	1 cut(s)	722
BshFI	GGCC	1 cut(s)	685
BshNI	GGYRCC	3 cut(s)	153, 248, 768
BsiHKAI	GWGCWC	2 cut(s)	66, 297
BsiSI	CCGG	2 cut(s)	387, 782
BslI	CCNNNNNNNGG	3 cut(s)	106, 245, 429
BsmAI	GTCTC	4 cut(s)	75, 556, 830, 918
BsnI	GGCC	1 cut(s)	685
Bso31I	GGTCTC	1 cut(s)	75
Bsp1286I	GDGCHC	4 cut(s)	66, 297, 363, 773
Bsp13I	TCCGGA	1 cut(s)	781
Bsp143I	GATC	1 cut(s)	646
Bsp1720I	GCTNAGC	1 cut(s)	65
BspACI	CCGC	2 cut(s)	104, 305
BspANI	GGCC	1 cut(s)	685
BspCNI	CTCAG	3 cut(s)	78, 748, 940
BspEI	TCCGGA	1 cut(s)	781
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	4 cut(s)	155, 250, 637, 770
BspMAI	CTGCAG	1 cut(s)	617
BspOI	GCTAGC	1 cut(s)	755
BspPI	GGATC	1 cut(s)	654
BspT107I	GGYRCC	3 cut(s)	153, 248, 768
BspTNI	GGTCTC	1 cut(s)	75
BsrI	ACTGG	2 cut(s)	660, 932
BssECI	CCNNGG	2 cut(s)	142, 428
BssMI	GATC	1 cut(s)	646
BssNAI	GTATAC	1 cut(s)	901
Bst1107I	GTATAC	1 cut(s)	901
Bst2UI	CCWGG	3 cut(s)	143, 430, 732
Bst4CI	ACNGT	3 cut(s)	39, 694, 971
Bst6I	CTCTTC	1 cut(s)	33
BstC8I	GCNNGC	2 cut(s)	490, 753
BstDEI	CTNAG	4 cut(s)	65, 519, 756, 948
BstF5I	GGATG	3 cut(s)	301, 349, 859
BstHHI	GCGC	2 cut(s)	280, 460
BstKTI	GATC	1 cut(s)	649
BstMAI	GTCTC	4 cut(s)	75, 556, 830, 918
BstMBI	GATC	1 cut(s)	646
BstMWI	GCNNNNNNNGC	1 cut(s)	286
BstNI	CCWGG	3 cut(s)	143, 430, 732
BstSCI	CCNGG	3 cut(s)	141, 428, 730
BstSFI	CTRYAG	1 cut(s)	613
BstSLI	GKGCMC	3 cut(s)	297, 363, 773
BstV1I	GCAGC	1 cut(s)	391
BstZ17I	GTATAC	1 cut(s)	901
Bsu36I	CCTNAGG	1 cut(s)	519
BsuI	GTATCC	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	685
BtsCI	GGATG	3 cut(s)	301, 349, 859
BtsIMutI	CAGTG	2 cut(s)	699, 975
Cac8I	GCNNGC	2 cut(s)	490, 753
CciI	TCATGA	1 cut(s)	208
CfoI	GCGC	2 cut(s)	280, 460
Cfr13I	GGNCC	1 cut(s)	635
CseI	GACGC	1 cut(s)	416
CsiI	ACCWGGT	1 cut(s)	730
Csp6I	GTAC	4 cut(s)	40, 139, 154, 653
CviAII	CATG	2 cut(s)	209, 650
CviQI	GTAC	4 cut(s)	40, 139, 154, 653
DdeI	CTNAG	4 cut(s)	65, 519, 756, 948
DpnI	GATC	1 cut(s)	648
DpnII	GATC	1 cut(s)	646
DrdI	GACNNNNNNGTC	1 cut(s)	570
DseDI	GACNNNNNNGTC	1 cut(s)	570
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Ecl136II	GAGCTC	1 cut(s)	64
Eco147I	AGGCCT	1 cut(s)	685
Eco24I	GRGCYC	1 cut(s)	66
Eco31I	GGTCTC	1 cut(s)	75
Eco32I	GATATC	1 cut(s)	220
Eco47I	GGWCC	1 cut(s)	635
Eco53kI	GAGCTC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	999
Eco81I	CCTNAGG	1 cut(s)	519
EcoICRI	GAGCTC	1 cut(s)	64
EcoRII	CCWGG	3 cut(s)	141, 428, 730
EcoRV	GATATC	1 cut(s)	220
EcoT38I	GRGCYC	1 cut(s)	66
FaeI	CATG	2 cut(s)	212, 653
FaiI	YATR	9 cut(s)	164, 210, 320, 420, 527, 633, 651, 711, 901
FalI	AAGNNNNNCTT	2 cut(s)	659, 691
FatI	CATG	2 cut(s)	208, 649
FblI	GTMKAC	1 cut(s)	900
Fnu4HI	GCNGC	1 cut(s)	380
FokI	GGATG	3 cut(s)	288, 336, 866
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	1 cut(s)	380
FspBI	CTAG	4 cut(s)	281, 455, 752, 965
GlaI	GCGC	2 cut(s)	279, 459
GluI	GCNGC	1 cut(s)	380
GsuI	CTGGAG	1 cut(s)	942
HaeIII	GGCC	1 cut(s)	685
HapII	CCGG	2 cut(s)	387, 782
HgaI	GACGC	1 cut(s)	416
HhaI	GCGC	2 cut(s)	280, 460
Hin1II	CATG	2 cut(s)	212, 653
Hin6I	GCGC	2 cut(s)	278, 458
HinP1I	GCGC	2 cut(s)	278, 458
HinfI	GANTC	5 cut(s)	394, 400, 442, 482, 571
HpaII	CCGG	2 cut(s)	387, 782
HphI	GGTGA	1 cut(s)	401
Hpy166II	GTNNAC	4 cut(s)	295, 808, 859, 901
Hpy188I	TCNGA	3 cut(s)	80, 399, 1013
Hpy188III	TCNNGA	7 cut(s)	209, 404, 550, 575, 782, 817, 999
Hpy8I	GTNNAC	4 cut(s)	295, 808, 859, 901
Hpy99I	CGWCG	1 cut(s)	883
HpyAV	CCTTC	7 cut(s)	30, 104, 233, 373, 649, 661, 910
HpyCH4III	ACNGT	3 cut(s)	39, 694, 971
HpyCH4V	TGCA	5 cut(s)	295, 492, 615, 739, 991
HpyF10VI	GCNNNNNNNGC	1 cut(s)	286
HpyF3I	CTNAG	4 cut(s)	65, 519, 756, 948
Hsp92II	CATG	2 cut(s)	212, 653
HspAI	GCGC	2 cut(s)	278, 458
Kpn2I	TCCGGA	1 cut(s)	781
KpnI	GGTACC	1 cut(s)	157
Kzo9I	GATC	1 cut(s)	646
LmnI	GCTCC	1 cut(s)	102
Lsp1109I	GCAGC	1 cut(s)	391
MabI	ACCWGGT	1 cut(s)	730
MaeI	CTAG	4 cut(s)	281, 455, 752, 965
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	1 cut(s)	648
MboI	GATC	1 cut(s)	646
MboII	GAAGA	7 cut(s)	15, 20, 691, 797, 800, 943, 992
MhlI	GDGCHC	4 cut(s)	66, 297, 363, 773
MluCI	AATT	7 cut(s)	15, 177, 267, 583, 847, 934, 1007
MlyI	GAGTC	3 cut(s)	436, 476, 580
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	9 cut(s)	21, 42, 100, 321, 363, 435, 706, 738, 741
MroI	TCCGGA	1 cut(s)	781
MseI	TTAA	1 cut(s)	477
MspA1I	CMGCKG	1 cut(s)	947
MspI	CCGG	2 cut(s)	387, 782
MspR9I	CCNGG	3 cut(s)	143, 430, 732
MvaI	CCWGG	3 cut(s)	143, 430, 732
MwoI	GCNNNNNNNGC	1 cut(s)	286
NdeII	GATC	1 cut(s)	646
NheI	GCTAGC	1 cut(s)	751
NlaIII	CATG	2 cut(s)	212, 653
NlaIV	GGNNCC	4 cut(s)	155, 250, 637, 770
NmuCI	GTSAC	1 cut(s)	3
PagI	TCATGA	1 cut(s)	208
PceI	AGGCCT	1 cut(s)	685
PfeI	GAWTC	2 cut(s)	394, 400
PflFI	GACNNNGTC	1 cut(s)	812
PkrI	GCNGC	1 cut(s)	381
PleI	GAGTC	3 cut(s)	436, 476, 579
PpsI	GAGTC	3 cut(s)	436, 476, 579
Psp124BI	GAGCTC	1 cut(s)	66
Psp6I	CCWGG	3 cut(s)	141, 428, 730
PspGI	CCWGG	3 cut(s)	141, 428, 730
PspN4I	GGNNCC	4 cut(s)	155, 250, 637, 770
PspPI	GGNCC	1 cut(s)	635
PstI	CTGCAG	1 cut(s)	617
PsyI	GACNNNGTC	1 cut(s)	812
PvuII	CAGCTG	1 cut(s)	947
RsaI	GTAC	4 cut(s)	41, 140, 155, 654
RsaNI	GTAC	4 cut(s)	40, 139, 154, 653
SacI	GAGCTC	1 cut(s)	66
SaqAI	TTAA	1 cut(s)	477
SatI	GCNGC	1 cut(s)	380
Sau3AI	GATC	1 cut(s)	646
Sau96I	GGNCC	1 cut(s)	635
SchI	GAGTC	3 cut(s)	436, 476, 580
ScrFI	CCNGG	3 cut(s)	143, 430, 732
SduI	GDGCHC	4 cut(s)	66, 297, 363, 773
SexAI	ACCWGGT	1 cut(s)	730
SfcI	CTRYAG	1 cut(s)	613
SinI	GGWCC	1 cut(s)	635
SmlI	CTYRAG	2 cut(s)	260, 742
SmoI	CTYRAG	2 cut(s)	260, 742
Sse9I	AATT	7 cut(s)	15, 177, 267, 583, 847, 934, 1007
SseBI	AGGCCT	1 cut(s)	685
SsiI	CCGC	2 cut(s)	104, 305
SspMI	CTAG	4 cut(s)	281, 455, 752, 965
SstI	GAGCTC	1 cut(s)	66
StuI	AGGCCT	1 cut(s)	685
StyD4I	CCNGG	3 cut(s)	141, 428, 730
TaaI	ACNGT	3 cut(s)	39, 694, 971
TaqI	TCGA	2 cut(s)	440, 878
TasI	AATT	7 cut(s)	15, 177, 267, 583, 847, 934, 1007
TatI	WGTACW	1 cut(s)	652
TfiI	GAWTC	2 cut(s)	394, 400
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TscAI	CASTG	2 cut(s)	699, 982
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	379
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	2 cut(s)	638, 734
TspRI	CASTG	2 cut(s)	699, 982
Tth111I	GACNNNGTC	1 cut(s)	812
VneI	GTGCAC	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	635
XapI	RAATTY	3 cut(s)	15, 177, 1007
XmiI	GTMKAC	1 cut(s)	900
XspI	CTAG	4 cut(s)	281, 455, 752, 965

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.